Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Reverse (-)

34331058 .. 34333052

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1284200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCGTTATGCAAGACCTCAATCCAAACCCAACTACCCAGGTCCCCAAACCACAATCCGACTCCACCTCCATCATCAGGCAAGCCGTCTTCTTGCTCCTCGTCTACCTATCGCTCGGCGTTGTAATTTACTCCTTCAGCAGGGACAAATTCTCCGGCGTCGAAACCCACCCGGTCGTCGACGCCCTCTACTTCTGTATAGTCACCATGTGCACCATTGGGTACGGTGACATTGCTCCCACCACTCCTCTCACCAAGATTTTCGCTTGCGTCTTTGTGCTCTTCGGGTTCGGTTTCATCGACATTTTGCTCAGTGGGGTCGTCAATTTTGTCCTCGACTTGCAAGAAAACATGATCTTGACCGGAATTCAAATGGGTCAGACTTCCCGGAATCATGGCTTCTCCGCCAGGGACTATATTGTCGATGTGGCAAAGGGGAGGATGAGAATCCGACTCAAGGTCGGCCTGGCGCTTGGGGTGGTGGTTCTGTGCATCGGCATTGGGGCTTTGGTGTTATGTTTTGTAGAGAATTTGGACTGGATTGATTCTGTTTACTTGTCCGTTATGTCGGTTACGACGGTTGGATACGGTGACAGGGCCTTCCAGACTCTCCAAGGGAGACTCTTCGCCGCCGTGTGGCTTCTGTTTTCGACGTTGGCGGTGGCTCGGGCGTTTATATATTTAGCAGAGGCCAGGGTGGACAAAAGGCACAGGAGGATTATGAACTGGGTTTTGCATAGGGATATCACCGTCCAGGATCTGCTTGCCGCCGACATCAATAACCATGGTTTCATCAGTAAGTCAGAGTATGTTATTTACAAGCTTAAAGAGATGGGAAAGATAGGGGAGAAAGATATTCTGCAAATCTGCGATCAGTTCAGTAGGCTTGACCAGAACCACTCTGGGAAGATAACACTGCCTGATCTGTTGGCGCATCGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

315

Amino Acids

35.08

Weight (kDa)

8.18

Isoelectric Point (pI)

20.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	30 - 105	4.4e-06	Ion transport protein
Ion_trans_2	PF07885	32 - 111	4.6e-16	Ion channel
Ion_trans_2	PF07885	161 - 229	2.7e-12	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	105, 180
AciI	CCGC	4 cut(s)	405, 630, 659, 768
AclWI	GGATC	1 cut(s)	765
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	149, 366, 529
AcuI	CTGAAG	1 cut(s)	121
AcyI	GRCGYC	2 cut(s)	159, 183
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	4 cut(s)	78, 141, 457, 636
AgsI	TTSAA	1 cut(s)	371
AhdI	GACNNNNNGTC	1 cut(s)	458
AjnI	CCWGG	5 cut(s)	39, 407, 465, 692, 753
AluBI	AGCT	1 cut(s)	823
AluI	AGCT	1 cut(s)	823
Alw21I	GWGCWC	2 cut(s)	215, 282
Alw26I	GTCTC	1 cut(s)	613
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	765
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	4 cut(s)	3, 463, 597, 690
ApaLI	GTGCAC	1 cut(s)	211
ApoI	RAATTY	3 cut(s)	149, 366, 529
AspLEI	GCGC	2 cut(s)	472, 934
AspS9I	GGNCC	2 cut(s)	43, 597
AsuC2I	CCSGG	2 cut(s)	173, 388
AsuHPI	GGTGA	5 cut(s)	196, 239, 244, 602, 739
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	215, 282
BccI	CCATC	2 cut(s)	80, 826
BceAI	ACGGC	2 cut(s)	71, 617
BciT130I	CCWGG	5 cut(s)	41, 409, 467, 694, 755
BciVI	GTATCC	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	173, 388
BcoDI	GTCTC	1 cut(s)	613
BfoI	RGCGCY	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	630, 768
BlsI	GCNGC	2 cut(s)	631, 769
Bme1390I	CCNGG	7 cut(s)	41, 173, 388, 409, 467, 694, 755
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	2 cut(s)	43, 597
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	7 cut(s)	41, 173, 388, 409, 467, 694, 755
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	1 cut(s)	501
BmuI	ACTGGG	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	173, 388
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	2 cut(s)	159, 183
BsaJI	CCNNGG	5 cut(s)	39, 408, 613, 693, 784
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 141, 457, 636
Bse1I	ACTGG	2 cut(s)	542, 731
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	5 cut(s)	41, 409, 467, 694, 755
BseDI	CCNNGG	5 cut(s)	39, 408, 613, 693, 784
BseGI	GGATG	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	78, 141, 457, 636
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	2 cut(s)	542, 731
BseRI	GAGGAG	2 cut(s)	89, 237
BseSI	GKGCMC	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	5, 465, 599, 692
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	215, 282
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	4 cut(s)	156, 173, 363, 388
BslFI	GGGAC	3 cut(s)	29, 158, 425
BslI	CCNNNNNNNGG	4 cut(s)	78, 141, 457, 636
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	3 cut(s)	29, 158, 425
BsnI	GGCC	4 cut(s)	5, 465, 599, 692
BsoBI	CYCGRG	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	215, 282
Bsp143I	GATC	4 cut(s)	354, 757, 871, 922
Bsp19I	CCATGG	1 cut(s)	784
BspACI	CCGC	4 cut(s)	405, 630, 659, 768
BspANI	GGCC	4 cut(s)	5, 465, 599, 692
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	765
BspQI	GCTCTTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	542, 731
BssECI	CCNNGG	5 cut(s)	39, 408, 613, 693, 784
BssMI	GATC	4 cut(s)	354, 757, 871, 922
BssNI	GRCGYC	2 cut(s)	159, 183
BssT1I	CCWWGG	2 cut(s)	613, 784
Bst2UI	CCWGG	5 cut(s)	41, 409, 467, 694, 755
Bst4CI	ACNGT	4 cut(s)	227, 580, 590, 751
Bst6I	CTCTTC	2 cut(s)	287, 629
BstACI	GRCGYC	2 cut(s)	159, 183
BstC8I	GCNNGC	3 cut(s)	84, 268, 765
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	784
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	472, 934
BstKTI	GATC	4 cut(s)	357, 760, 874, 925
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	4 cut(s)	354, 757, 871, 922
BstMCI	CGRYCG	1 cut(s)	177
BstNI	CCWGG	5 cut(s)	41, 409, 467, 694, 755
BstSCI	CCNGG	7 cut(s)	39, 171, 386, 407, 465, 692, 753
BstSLI	GKGCMC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	4 cut(s)	5, 465, 599, 692
BtgI	CCRYGG	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	920
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	1 cut(s)	914
BtsIMutI	CAGTG	2 cut(s)	319, 914
Cac8I	GCNNGC	3 cut(s)	84, 268, 765
CaiI	CAGNNNCTG	1 cut(s)	760
CfoI	GCGC	2 cut(s)	472, 934
Cfr13I	GGNCC	2 cut(s)	43, 597
CseI	GACGC	3 cut(s)	148, 191, 259
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	4 cut(s)	208, 352, 395, 785
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	4 cut(s)	356, 759, 873, 924
DpnII	GATC	4 cut(s)	354, 757, 871, 922
DraIII	CACNNNGTG	1 cut(s)	210
DrdI	GACNNNNNNGTC	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	287, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	458
EarI	CTCTTC	2 cut(s)	287, 629
EciI	GGCGGA	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	613, 784
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	666
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	43, 597
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	5 cut(s)	39, 407, 465, 692, 753
EcoRV	GATATC	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	613, 784
ErhI	CCWWGG	2 cut(s)	613, 784
FaeI	CATG	4 cut(s)	211, 355, 398, 788
FaqI	GGGAC	3 cut(s)	29, 158, 425
FatI	CATG	4 cut(s)	207, 351, 394, 784
FblI	GTMKAC	2 cut(s)	105, 180
Fnu4HI	GCNGC	2 cut(s)	630, 768
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	630, 768
GlaI	GCGC	2 cut(s)	471, 933
GluI	GCNGC	2 cut(s)	630, 768
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	5, 465, 599, 692
HapII	CCGG	4 cut(s)	156, 173, 363, 388
HgaI	GACGC	3 cut(s)	148, 191, 259
HhaI	GCGC	2 cut(s)	472, 934
Hin1I	GRCGYC	2 cut(s)	159, 183
Hin1II	CATG	4 cut(s)	211, 355, 398, 788
Hin6I	GCGC	2 cut(s)	470, 932
HinP1I	GCGC	2 cut(s)	470, 932
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	62, 391, 447, 453, 545, 607, 621
HpaII	CCGG	4 cut(s)	156, 173, 363, 388
HphI	GGTGA	5 cut(s)	196, 239, 244, 602, 739
Hpy166II	GTNNAC	5 cut(s)	106, 181, 213, 553, 700
Hpy188I	TCNGA	4 cut(s)	61, 381, 452, 805
Hpy188III	TCNNGA	2 cut(s)	358, 604
Hpy8I	GTNNAC	5 cut(s)	106, 181, 213, 553, 700
Hpy99I	CGWCG	5 cut(s)	164, 182, 185, 580, 655
HpyAV	CCTTC	2 cut(s)	145, 610
HpyCH4III	ACNGT	4 cut(s)	227, 580, 590, 751
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	6 cut(s)	13, 213, 343, 492, 736, 862
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	2 cut(s)	159, 183
Hsp92II	CATG	4 cut(s)	211, 355, 398, 788
HspAI	GCGC	2 cut(s)	470, 932
Kzo9I	GATC	4 cut(s)	354, 757, 871, 922
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	102, 241
LweI	GCATC	1 cut(s)	501
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	4 cut(s)	202, 227, 571, 590
MalI	GATC	4 cut(s)	356, 759, 873, 924
MboI	GATC	4 cut(s)	354, 757, 871, 922
MboII	GAAGA	4 cut(s)	82, 274, 616, 919
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	2 cut(s)	215, 282
MluCI	AATT	5 cut(s)	126, 149, 325, 366, 529
MlyI	GAGTC	4 cut(s)	56, 447, 601, 615
MmeI	TCCRAC	3 cut(s)	84, 475, 562
MnlI	CCTC	9 cut(s)	29, 79, 110, 197, 258, 344, 432, 682, 708
MseI	TTAA	1 cut(s)	825
MspI	CCGG	4 cut(s)	156, 173, 363, 388
MspR9I	CCNGG	7 cut(s)	41, 173, 388, 409, 467, 694, 755
MvaI	CCWGG	5 cut(s)	41, 409, 467, 694, 755
NciI	CCSGG	2 cut(s)	173, 388
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	4 cut(s)	354, 757, 871, 922
NlaIII	CATG	4 cut(s)	211, 355, 398, 788
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	3 cut(s)	202, 227, 590
PciSI	GCTCTTC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	391, 447, 545
PfoI	TCCNGGA	2 cut(s)	386, 753
PkrI	GCNGC	2 cut(s)	631, 769
PleI	GAGTC	4 cut(s)	56, 447, 601, 615
PpsI	GAGTC	4 cut(s)	56, 447, 601, 615
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	5 cut(s)	39, 407, 465, 692, 753
PspGI	CCWGG	5 cut(s)	39, 407, 465, 692, 753
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	43, 597
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	825
SatI	GCNGC	2 cut(s)	630, 768
Sau3AI	GATC	4 cut(s)	354, 757, 871, 922
Sau96I	GGNCC	2 cut(s)	43, 597
SchI	GAGTC	4 cut(s)	56, 447, 601, 615
ScrFI	CCNGG	7 cut(s)	41, 173, 388, 409, 467, 694, 755
SduI	GDGCHC	2 cut(s)	215, 282
SetI	ASST	7 cut(s)	21, 45, 71, 111, 462, 656, 825
SfaNI	GCATC	1 cut(s)	501
SgrDI	CGTCGACG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	5 cut(s)	126, 149, 325, 366, 529
SsiI	CCGC	4 cut(s)	405, 630, 659, 768
StyD4I	CCNGG	7 cut(s)	39, 171, 386, 407, 465, 692, 753
StyI	CCWWGG	2 cut(s)	613, 784
TaaI	ACNGT	4 cut(s)	227, 580, 590, 751
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	6 cut(s)	162, 180, 300, 336, 423, 650
TasI	AATT	5 cut(s)	126, 149, 325, 366, 529
TauI	GCSGC	2 cut(s)	632, 770
TfiI	GAWTC	3 cut(s)	391, 447, 545
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	2 cut(s)	319, 921
TseFI	GTSAC	3 cut(s)	202, 227, 590
Tsp45I	GTSAC	3 cut(s)	202, 227, 590
TspDTI	ATGAA	3 cut(s)	286, 737, 781
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	2 cut(s)	319, 921
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	149, 366, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XmiI	GTMKAC	2 cut(s)	105, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.