Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Forward (+)

1072376 .. 1073779

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGAATCTGTCTTCTCTTGTATACCAGAAGACGTAGTCTTCAACATCTTCTTCAAGCTCCAAGATGATCCAAGAAACTGGGCTCGTCTCGCTTGCGTCTGCACCAAATTCTCCTCAATTGTTCGAAACGTTTGTTGTAAAACTCAGTGCTACTCCGCTATCCCCACCGTCATCTCCGATCTCCTCCCTCTTCCTCCCTCCGCCGCCGCATCCGCTTCTTCATCCACCGCGGCGGATTCGTCTCTTACTCCTCCCGGTGGTTGGGCTTCTTTATACAAACTCGCTGTTTGTTGTCCTGGTCTCTTCCACGCTGGAATTCTCCTCGAAAACTCCGATTTCGGTTTAGAACGTGAGCTAGGTCCCGATCAAAACCTCGATCCGAAACCTACTACGACGGATCTAGCTCTTAACGACGAAGAAGTTTCGAAACCAGTTGGATCTGGTTTAGAAACGACTTCGTTTTGGTCTCTATATGATGATCTCTACACAGATACTATTCCCGCTCCTCCTCCCGAAGATTCAATCGACGATCAAGAAGAAGAAATCGAAACGAGTGAGATCAGACCTGGACGAGATCTTCCGGTAAGGAAACGAAGGAAGATTTGTCGATCTCTAGGATCTCATTTAGCTTCCGGTGGCTGGAACCTTAGCCGTGAACAAGGCAACAAGCTTCTCGCGAGTAGATTCCGAGGTGATTGTCTCTACATTTGCAATTGGCCTGGGTGTATTCACGTAGAAGAGAAACGAAATTACATGTTGTTTAGAGGAGTCTTCAAGGATTTCAAAAGGTCTAGAGTTTGGAGAACGATAAACGACGGTAATCGGAGTAAGACCTCGGGTTTGAAATGCGCGTTTTGTTTGTGCGATGAGACTTGGGATTTGCATTCATCGTTTTGTTTGAGAAGAGTGTTTGGGTTTCATGATGATGGTGAACCAGTTGTGAGAGCTTATGTTTGTGAGAATGGTCATGTCTCTGGTGCTTGGACTGCTTTACCTCTCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

336

Amino Acids

37.4

Weight (kDa)

5.38

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	3 cut(s)	233, 680, 854
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	5 cut(s)	65, 374, 408, 448, 628
AcsI	RAATTY	2 cut(s)	110, 318
AfiI	CCNNNNNNNGG	3 cut(s)	260, 264, 642
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	6 cut(s)	46, 58, 525, 778, 787, 847
AjnI	CCWGG	3 cut(s)	298, 568, 721
AluBI	AGCT	6 cut(s)	61, 358, 407, 632, 673, 950
AluI	AGCT	6 cut(s)	61, 358, 407, 632, 673, 950
Alw26I	GTCTC	7 cut(s)	95, 249, 308, 474, 707, 866, 979
AlwI	GGATC	5 cut(s)	65, 374, 408, 448, 628
Ama87I	CYCGRG	1 cut(s)	838
AoxI	GGCC	1 cut(s)	719
ApoI	RAATTY	2 cut(s)	110, 318
ArsI	GACNNNNNNTTYG	4 cut(s)	826, 858, 865, 897
AspLEI	GCGC	1 cut(s)	854
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	707, 944
AsuII	TTCGAA	2 cut(s)	127, 428
AvaI	CYCGRG	1 cut(s)	838
AvaII	GGWCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	4 cut(s)	7, 34, 39, 766
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	3 cut(s)	300, 570, 723
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	7 cut(s)	95, 249, 308, 474, 707, 866, 979
BfaI	CTAG	4 cut(s)	359, 404, 617, 795
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	3 cut(s)	207, 210, 234
BlsI	GCNGC	3 cut(s)	208, 211, 235
Bme1390I	CCNGG	4 cut(s)	258, 300, 570, 723
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	838
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	364, 647
BmrFI	CCNGG	4 cut(s)	258, 300, 570, 723
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	4 cut(s)	7, 34, 39, 766
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	2 cut(s)	127, 428
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	736
BsaI	GGTCTC	2 cut(s)	308, 474
BsaJI	CCNNGG	4 cut(s)	231, 691, 722, 837
BsaWI	WCCGGW	2 cut(s)	583, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 264, 642
Bse1I	ACTGG	3 cut(s)	86, 434, 938
BseBI	CCWGG	3 cut(s)	300, 570, 723
BseDI	CCNNGG	4 cut(s)	231, 691, 722, 837
BseGI	GGATG	2 cut(s)	212, 224
BseLI	CCNNNNNNNGG	3 cut(s)	260, 264, 642
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	3 cut(s)	86, 434, 938
BseRI	GAGGAG	7 cut(s)	106, 176, 243, 314, 498, 501, 783
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	3 cut(s)	233, 680, 854
BshFI	GGCC	1 cut(s)	721
BsiHKCI	CYCGRG	1 cut(s)	838
BsiSI	CCGG	3 cut(s)	258, 584, 636
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	260, 264, 642
BsmAI	GTCTC	7 cut(s)	95, 249, 308, 474, 707, 866, 979
BsmBI	CGTCTC	2 cut(s)	95, 249
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	1 cut(s)	721
Bso31I	GGTCTC	2 cut(s)	308, 474
BsoBI	CYCGRG	1 cut(s)	838
Bsp119I	TTCGAA	2 cut(s)	127, 428
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp68I	TCGCGA	1 cut(s)	680
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	3 cut(s)	233, 680, 854
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	2 cut(s)	364, 647
BspPI	GGATC	5 cut(s)	65, 374, 408, 448, 628
BspT104I	TTCGAA	2 cut(s)	127, 428
BspTNI	GGTCTC	2 cut(s)	308, 474
BsrBI	CCGCTC	1 cut(s)	506
BsrI	ACTGG	3 cut(s)	86, 434, 938
BssECI	CCNNGG	4 cut(s)	231, 691, 722, 837
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst2UI	CCWGG	3 cut(s)	300, 570, 723
Bst4CI	ACNGT	2 cut(s)	172, 821
Bst6I	CTCTTC	4 cut(s)	198, 311, 735, 901
BstBAI	YACGTR	1 cut(s)	736
BstBI	TTCGAA	2 cut(s)	127, 428
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	147, 650
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	212, 224
BstFNI	CGCG	3 cut(s)	233, 680, 854
BstHHI	GCGC	1 cut(s)	854
BstMAI	GTCTC	7 cut(s)	95, 249, 308, 474, 707, 866, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 215, 989
BstNI	CCWGG	3 cut(s)	300, 570, 723
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	4 cut(s)	256, 298, 568, 721
BstUI	CGCG	3 cut(s)	233, 680, 854
BstV2I	GAAGAC	4 cut(s)	7, 34, 39, 766
BstX2I	RGATCY	4 cut(s)	400, 440, 577, 620
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	4 cut(s)	400, 440, 577, 620
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	721
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	212, 224
BtsIMutI	CAGTG	1 cut(s)	155
BtuMI	TCGCGA	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	922
CfoI	GCGC	1 cut(s)	854
Cfr13I	GGNCC	1 cut(s)	362
Cfr42I	CCGCGG	1 cut(s)	234
CseI	GACGC	1 cut(s)	88
CviAII	CATG	3 cut(s)	757, 923, 971
DdeI	CTNAG	2 cut(s)	147, 650
Eam1104I	CTCTTC	4 cut(s)	198, 311, 735, 901
EarI	CTCTTC	4 cut(s)	198, 311, 735, 901
EciI	GGCGGA	3 cut(s)	20, 193, 251
Eco24I	GRGCYC	1 cut(s)	88
Eco31I	GGTCTC	2 cut(s)	308, 474
Eco47I	GGWCC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	3 cut(s)	298, 568, 721
EcoT38I	GRGCYC	1 cut(s)	88
Esp3I	CGTCTC	2 cut(s)	95, 249
FaeI	CATG	3 cut(s)	760, 926, 974
FaiI	YATR	8 cut(s)	26, 277, 475, 477, 758, 924, 954, 972
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	756, 922, 970
FauI	CCCGC	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	207, 210, 234
FokI	GGATG	2 cut(s)	199, 211
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	207, 210, 234
FspBI	CTAG	4 cut(s)	359, 404, 617, 795
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	3 cut(s)	207, 210, 234
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	3 cut(s)	258, 584, 636
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	854
Hin1II	CATG	3 cut(s)	760, 926, 974
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	5 cut(s)	8, 239, 521, 687, 771
HpaII	CCGG	3 cut(s)	258, 584, 636
HphI	GGTGA	2 cut(s)	707, 944
Hpy166II	GTNNAC	3 cut(s)	26, 659, 935
Hpy188I	TCNGA	6 cut(s)	181, 337, 384, 566, 692, 828
Hpy188III	TCNNGA	6 cut(s)	365, 515, 536, 679, 795, 923
Hpy8I	GTNNAC	3 cut(s)	26, 659, 935
Hpy99I	CGWCG	4 cut(s)	400, 419, 533, 821
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	2 cut(s)	172, 821
HpyCH4IV	ACGT	4 cut(s)	36, 132, 352, 735
HpyCH4V	TGCA	3 cut(s)	105, 714, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 215, 989
HpyF3I	CTNAG	2 cut(s)	147, 650
HpySE526I	ACGT	4 cut(s)	36, 132, 352, 735
Hsp92II	CATG	3 cut(s)	760, 926, 974
HspAI	GCGC	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	66, 511
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	4 cut(s)	359, 404, 617, 795
MaeII	ACGT	4 cut(s)	36, 132, 352, 735
MbiI	CCGCTC	1 cut(s)	506
MfeI	CAATTG	2 cut(s)	120, 715
MflI	RGATCY	4 cut(s)	400, 440, 577, 620
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	5 cut(s)	110, 120, 318, 715, 751
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	1 cut(s)	418
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	927
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	258, 584, 636
MspR9I	CCNGG	4 cut(s)	258, 300, 570, 723
MunI	CAATTG	2 cut(s)	120, 715
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	3 cut(s)	300, 570, 723
MvnI	CGCG	3 cut(s)	233, 680, 854
MwoI	GCNNNNNNNGC	3 cut(s)	92, 215, 989
NciI	CCSGG	1 cut(s)	258
NlaIII	CATG	3 cut(s)	760, 926, 974
NlaIV	GGNNCC	2 cut(s)	364, 647
NruI	TCGCGA	1 cut(s)	680
NspI	RCATGY	1 cut(s)	760
NspV	TTCGAA	2 cut(s)	127, 428
PagI	TCATGA	1 cut(s)	922
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	886
PfeI	GAWTC	4 cut(s)	8, 239, 521, 687
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	208, 211, 235
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Ppu21I	YACGTR	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	362
PscI	ACATGT	1 cut(s)	756
Psp1406I	AACGTT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	3 cut(s)	298, 568, 721
PspGI	CCWGG	3 cut(s)	298, 568, 721
PspN4I	GGNNCC	2 cut(s)	364, 647
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
PsuI	RGATCY	4 cut(s)	400, 440, 577, 620
PsyI	GACNNNGTC	1 cut(s)	38
RruI	TCGCGA	1 cut(s)	680
RseI	CAYNNNNRTG	1 cut(s)	927
SacII	CCGCGG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	207, 210, 234
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	4 cut(s)	258, 300, 570, 723
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	221
Sfr303I	CCGCGG	1 cut(s)	234
SfuI	TTCGAA	2 cut(s)	127, 428
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	927
Sse9I	AATT	5 cut(s)	110, 120, 318, 715, 751
SspMI	CTAG	4 cut(s)	359, 404, 617, 795
StyD4I	CCNGG	4 cut(s)	256, 298, 568, 721
TaaI	ACNGT	2 cut(s)	172, 821
TaiI	ACGT	4 cut(s)	39, 135, 355, 738
TaqI	TCGA	7 cut(s)	127, 327, 378, 428, 528, 549, 610
TasI	AATT	5 cut(s)	110, 120, 318, 715, 751
TauI	GCSGC	3 cut(s)	209, 212, 236
TfiI	GAWTC	4 cut(s)	8, 239, 521, 687
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	213, 879, 911
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	155
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	110, 318
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	4 cut(s)	359, 404, 617, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.