pycom11g27150

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29502439 .. 29503470
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g27150.1

Sequence Viewer

Length: 1032 bp
ATGGCCGGAACCCTGTTCTCGAAGCTCTCCGACGATGTACTTCTGAACATCCTCTTCAAGCTCGAGGAGGACCCGCGGAACTGGGCTCGGCTCACCTGCTCCTGCACCAAGTTCTCCTCCATGATCCGAAACGTCTGCTGGAAGACCAAGTGCTACAAGGTCATTCCTTCCGTCGTTTCCGATCTCCTTGCCGGCTCCTCCGAGCCTCCCGGCGGCTGGGCCTCCCTTCACAAGCTTGCTGTCTGCTGCCCCGGTCTCCTGCACTCCGGCGTCCTCTTCGAGAACTCCGACTTTGGGCTCGAGCGCGAGCTCGGTCCCGACGAGGATTACCGGAGATTGGACTTCAGTCCGGTCGGCGTATCTCCGGCGGCCAAGCCTCAGACCGAGGCGTCCTCGAGCCAAATTGGCGCCAATCAGGAGGGTGGTTCGTCTGGAAATGATTGTTCTTGGTCTCTGTTCGATGATCTTTATTTCGATACAGTCTATAACGATTCTGAAGCCAATGATCAAGAGCAAGATAATTCCAAATTAGAATCAGCGGCGACGGAGGCGGCGGAGGATCAAGTCTCCGTCGAGAATGGCTCCGTTGGAGTGGGCAGCGAATTTTCGATTTGCAAGAAAAGGAAGGTCTACAGACCGATGAGGTCGCATTTGGCTTCTGGGGTTTGGAATCTGAGCCGTGAGCAGGGCAACAAGCTTCTCCACAGCAGGTTCCGCGGCGATCGCTTGTACATTTGTGATTGGCCCGGCTGCGTGCACATCGAAGAGAAGCGAAATTACATGCTTTTCAGAGGGATTTTCAAGGATTTCAAGGGGTCCCAAGTGTGGAGGACGATCAAGGATGGGAACCGCAGCAAGATTGATCTGAATTGCGCGTTTTGCACCTGCAAAGACACTTGGGATTTGCATTCTGCATTCTGCTTGAGGCGGGTTTTCGGGTACCATGACGATGGCGAGCCGGTTGTTCGAGCTTATGTCTGTGAAAATGGACATGTCTCTGGGGCTTGGACCGACCTGCCATTGTACTCTTGA

Protein Analysis

344

Amino Acids

38.37

Weight (kDa)

5.57

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 104, 893
AasI GACNNNNNNGTC 1 cut(s) 388
Acc36I ACCTGC 4 cut(s) 104, 699, 893, 1023
Acc65I GGTACC 1 cut(s) 939
AccB1I GGYRCC 2 cut(s) 407, 939
AccI GTMKAC 1 cut(s) 630
AccII CGCG 4 cut(s) 76, 306, 717, 875
AclWI GGATC 2 cut(s) 118, 567
AcoI YGGCCR 2 cut(s) 3, 369
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 2 cut(s) 328, 516
AcyI GRCGYC 3 cut(s) 270, 389, 408
AfaI GTAC 4 cut(s) 39, 731, 941, 1025
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 685, 825
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 3 cut(s) 58, 802, 811
AluBI AGCT 6 cut(s) 25, 61, 235, 310, 697, 971
AluI AGCT 6 cut(s) 25, 61, 235, 310, 697, 971
Alw21I GWGCWC 2 cut(s) 312, 759
Alw26I GTCTC 4 cut(s) 260, 456, 571, 1000
Alw44I GTGCAC 1 cut(s) 755
AlwI GGATC 2 cut(s) 118, 567
Ama87I CYCGRG 3 cut(s) 62, 299, 394
AoxI GGCC 4 cut(s) 3, 219, 369, 743
ApaLI GTGCAC 1 cut(s) 755
ApeKI GCWGC 4 cut(s) 246, 597, 750, 852
ApoI RAATTY 1 cut(s) 602
AsiSI GCGATCGC 1 cut(s) 724
Asp718I GGTACC 1 cut(s) 939
AspLEI GCGC 3 cut(s) 306, 410, 875
AspS9I GGNCC 6 cut(s) 70, 219, 314, 744, 816, 1008
AsuC2I CCSGG 3 cut(s) 210, 252, 747
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 3 cut(s) 62, 299, 394
AvaII GGWCC 4 cut(s) 70, 314, 816, 1008
BaeGI GKGCMC 1 cut(s) 759
BanI GGYRCC 2 cut(s) 407, 939
BanII GRGCYC 3 cut(s) 88, 300, 312
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 312, 759
BbvI GCAGC 4 cut(s) 233, 609, 737, 864
BccI CCATC 2 cut(s) 836, 944
BceAI ACGGC 1 cut(s) 663
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 170, 204
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 3 cut(s) 210, 252, 747
BcoDI GTCTC 4 cut(s) 260, 456, 571, 1000
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 1 cut(s) 411
BfuAI ACCTGC 4 cut(s) 104, 699, 893, 1023
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 9 cut(s) 214, 247, 369, 540, 552, 598, 718, 751, 853
BlsI GCNGC 9 cut(s) 215, 248, 370, 541, 553, 599, 719, 752, 854
Bme1390I CCNGG 3 cut(s) 210, 252, 747
Bme18I GGWCC 4 cut(s) 70, 314, 816, 1008
BmeT110I CYCGRG 3 cut(s) 62, 299, 394
BmgT120I GGNCC 6 cut(s) 70, 219, 314, 744, 816, 1008
BmrFI CCNGG 3 cut(s) 210, 252, 747
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 4 cut(s) 377, 409, 566, 598
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 3 cut(s) 210, 252, 747
BsaHI GRCGYC 3 cut(s) 270, 389, 408
BsaI GGTCTC 2 cut(s) 260, 456
BsaJI CCNNGG 4 cut(s) 74, 250, 384, 715
BsaWI WCCGGW 2 cut(s) 330, 349
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 685, 825
Bse118I RCCGGY 2 cut(s) 191, 958
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 4 cut(s) 74, 250, 384, 715
BseGI GGATG 2 cut(s) 48, 847
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 685, 825
BseMII CTCAG 2 cut(s) 392, 665
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 3 cut(s) 80, 106, 187
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 4 cut(s) 233, 609, 737, 864
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 2 cut(s) 88, 245
Bsh1236I CGCG 4 cut(s) 76, 306, 717, 875
Bsh1285I CGRYCG 2 cut(s) 354, 724
BshFI GGCC 4 cut(s) 5, 221, 371, 745
BshNI GGYRCC 2 cut(s) 407, 939
BsiEI CGRYCG 2 cut(s) 354, 724
BsiHKAI GWGCWC 2 cut(s) 312, 759
BsiHKCI CYCGRG 3 cut(s) 62, 299, 394
BslFI GGGAC 2 cut(s) 300, 802
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 685, 825
BsmAI GTCTC 4 cut(s) 260, 456, 571, 1000
BsmFI GGGAC 2 cut(s) 300, 802
BsmI GAATGC 2 cut(s) 907, 914
BsnI GGCC 4 cut(s) 5, 221, 371, 745
Bso31I GGTCTC 2 cut(s) 260, 456
BsoBI CYCGRG 3 cut(s) 62, 299, 394
Bsp1286I GDGCHC 4 cut(s) 88, 300, 312, 759
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
BspANI GGCC 4 cut(s) 5, 221, 371, 745
BspCNI CTCAG 2 cut(s) 391, 666
BspFNI CGCG 4 cut(s) 76, 306, 717, 875
BspMI ACCTGC 4 cut(s) 104, 699, 893, 1023
BspPI GGATC 2 cut(s) 118, 567
BspT107I GGYRCC 2 cut(s) 407, 939
BspTNI GGTCTC 2 cut(s) 260, 456
BsrFI RCCGGY 2 cut(s) 191, 958
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 2 cut(s) 191, 958
BssECI CCNNGG 4 cut(s) 74, 250, 384, 715
BssMI GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
BssNI GRCGYC 3 cut(s) 270, 389, 408
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 3 cut(s) 59, 281, 759
BstACI GRCGYC 3 cut(s) 270, 389, 408
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 5 cut(s) 193, 237, 308, 755, 956
BstDEI CTNAG 2 cut(s) 378, 674
BstDSI CCRYGG 2 cut(s) 74, 715
BstF5I GGATG 2 cut(s) 48, 847
BstFNI CGCG 4 cut(s) 76, 306, 717, 875
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 3 cut(s) 306, 410, 875
BstKTI GATC 8 cut(s) 126, 184, 466, 508, 562, 724, 837, 865
BstMAI GTCTC 4 cut(s) 260, 456, 571, 1000
BstMBI GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
BstMCI CGRYCG 2 cut(s) 354, 724
BstMWI GCNNNNNNNGC 5 cut(s) 405, 548, 714, 723, 879
BstNSI RCATGY 2 cut(s) 784, 995
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 208, 250, 745
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 759
BstUI CGCG 4 cut(s) 76, 306, 717, 875
BstV1I GCAGC 4 cut(s) 233, 609, 737, 864
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 950
BsuRI GGCC 4 cut(s) 5, 221, 371, 745
BtgI CCRYGG 2 cut(s) 74, 715
BtsCI GGATG 2 cut(s) 48, 847
BveI ACCTGC 4 cut(s) 104, 699, 893, 1023
Cac8I GCNNGC 5 cut(s) 193, 237, 308, 755, 956
CfoI GCGC 3 cut(s) 306, 410, 875
Cfr10I RCCGGY 2 cut(s) 191, 958
Cfr13I GGNCC 6 cut(s) 70, 219, 314, 744, 816, 1008
Cfr42I CCGCGG 2 cut(s) 77, 718
CseI GACGC 2 cut(s) 259, 378
Csp6I GTAC 4 cut(s) 38, 730, 940, 1024
CviAII CATG 4 cut(s) 121, 781, 944, 992
CviQI GTAC 4 cut(s) 38, 730, 940, 1024
DdeI CTNAG 2 cut(s) 378, 674
DinI GGCGCC 1 cut(s) 409
DpnI GATC 8 cut(s) 125, 183, 465, 507, 561, 723, 836, 864
DpnII GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
EaeI YGGCCR 2 cut(s) 3, 369
Eam1104I CTCTTC 3 cut(s) 59, 281, 759
EarI CTCTTC 3 cut(s) 59, 281, 759
EciI GGCGGA 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 3 cut(s) 88, 300, 312
Eco31I GGTCTC 2 cut(s) 260, 456
Eco47I GGWCC 4 cut(s) 70, 314, 816, 1008
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 328, 516
Eco88I CYCGRG 3 cut(s) 62, 299, 394
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 70, 816
EcoT38I GRGCYC 3 cut(s) 88, 300, 312
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
FaeI CATG 4 cut(s) 124, 784, 947, 995
FaiI YATR 6 cut(s) 122, 486, 782, 945, 975, 993
FaqI GGGAC 2 cut(s) 300, 802
FatI CATG 4 cut(s) 120, 780, 943, 991
FauI CCCGC 2 cut(s) 81, 921
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 9 cut(s) 214, 247, 369, 540, 552, 598, 718, 751, 853
FokI GGATG 2 cut(s) 35, 854
FriOI GRGCYC 3 cut(s) 88, 300, 312
Fsp4HI GCNGC 9 cut(s) 214, 247, 369, 540, 552, 598, 718, 751, 853
GlaI GCGC 3 cut(s) 305, 409, 874
GluI GCNGC 9 cut(s) 214, 247, 369, 540, 552, 598, 718, 751, 853
GsaI CCCAGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 4 cut(s) 5, 221, 371, 745
HgaI GACGC 2 cut(s) 259, 378
HhaI GCGC 3 cut(s) 306, 410, 875
Hin1I GRCGYC 3 cut(s) 270, 389, 408
Hin1II CATG 4 cut(s) 124, 784, 947, 995
Hin6I GCGC 3 cut(s) 304, 408, 873
HinP1I GCGC 3 cut(s) 304, 408, 873
HindIII AAGCTT 2 cut(s) 233, 695
HinfI GANTC 3 cut(s) 491, 533, 670
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 631, 757
Hpy188III TCNNGA 8 cut(s) 19, 280, 317, 416, 432, 509, 574, 1029
Hpy8I GTNNAC 2 cut(s) 631, 757
Hpy99I CGWCG 5 cut(s) 35, 176, 323, 547, 575
HpyAV CCTTC 3 cut(s) 177, 236, 619
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 8 cut(s) 105, 262, 615, 757, 882, 888, 907, 914
HpyF10VI GCNNNNNNNGC 5 cut(s) 405, 548, 714, 723, 879
HpyF3I CTNAG 2 cut(s) 378, 674
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 3 cut(s) 270, 389, 408
Hsp92II CATG 4 cut(s) 124, 784, 947, 995
HspAI GCGC 3 cut(s) 304, 408, 873
KasI GGCGCC 1 cut(s) 407
KflI GGGWCCC 1 cut(s) 816
KpnI GGTACC 1 cut(s) 943
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 505
KspI CCGCGG 2 cut(s) 77, 718
Kzo9I GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
LmnI GCTCC 3 cut(s) 104, 200, 587
Lsp1109I GCAGC 4 cut(s) 233, 609, 737, 864
MaeII ACGT 1 cut(s) 132
MalI GATC 8 cut(s) 125, 183, 465, 507, 561, 723, 836, 864
MboI GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
MboII GAAGA 4 cut(s) 46, 154, 268, 776
MhlI GDGCHC 4 cut(s) 88, 300, 312, 759
MluCI AATT 6 cut(s) 402, 520, 527, 602, 775, 868
Mly113I GGCGCC 1 cut(s) 408
MmeI TCCRAC 3 cut(s) 54, 312, 568
MroNI GCCGGC 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 948
MspA1I CMGCKG 3 cut(s) 76, 539, 717
MspR9I CCNGG 3 cut(s) 210, 252, 747
Mva1269I GAATGC 2 cut(s) 907, 914
MvnI CGCG 4 cut(s) 76, 306, 717, 875
MwoI GCNNNNNNNGC 5 cut(s) 405, 548, 714, 723, 879
NaeI GCCGGC 1 cut(s) 193
NarI GGCGCC 1 cut(s) 408
NciI CCSGG 3 cut(s) 210, 252, 747
NdeII GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 4 cut(s) 124, 784, 947, 995
NmeAIII GCCGAG 1 cut(s) 67
NspI RCATGY 2 cut(s) 784, 995
PaeR7I CTCGAG 3 cut(s) 62, 299, 394
PaqCI CACCTGC 2 cut(s) 104, 893
PciI ACATGT 1 cut(s) 991
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 318
PctI GAATGC 2 cut(s) 907, 914
PdiI GCCGGC 1 cut(s) 193
PfeI GAWTC 3 cut(s) 491, 533, 670
PkrI GCNGC 9 cut(s) 215, 248, 370, 541, 553, 599, 719, 752, 854
Ple19I CGATCG 1 cut(s) 724
PluTI GGCGCC 1 cut(s) 411
PpuMI RGGWCCY 2 cut(s) 70, 816
PscI ACATGT 1 cut(s) 991
PshAI GACNNNNGTC 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 2 cut(s) 70, 816
PspFI CCCAGC 1 cut(s) 216
PspPI GGNCC 6 cut(s) 70, 219, 314, 744, 816, 1008
PspPPI RGGWCCY 2 cut(s) 70, 816
PspXI VCTCGAGB 3 cut(s) 62, 299, 394
PvuI CGATCG 1 cut(s) 724
RgaI GCGATCGC 1 cut(s) 724
RsaI GTAC 4 cut(s) 39, 731, 941, 1025
RsaNI GTAC 4 cut(s) 38, 730, 940, 1024
RseI CAYNNNNRTG 1 cut(s) 948
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 2 cut(s) 77, 718
SatI GCNGC 9 cut(s) 214, 247, 369, 540, 552, 598, 718, 751, 853
Sau3AI GATC 8 cut(s) 123, 181, 463, 505, 559, 721, 834, 862
Sau96I GGNCC 6 cut(s) 70, 219, 314, 744, 816, 1008
ScrFI CCNGG 3 cut(s) 210, 252, 747
SduI GDGCHC 4 cut(s) 88, 300, 312, 759
SfaAI GCGATCGC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 631
SfoI GGCGCC 1 cut(s) 409
Sfr274I CTCGAG 3 cut(s) 62, 299, 394
Sfr303I CCGCGG 2 cut(s) 77, 718
SgfI GCGATCGC 1 cut(s) 724
SgrBI CCGCGG 2 cut(s) 77, 718
SinI GGWCC 4 cut(s) 70, 314, 816, 1008
SlaI CTCGAG 3 cut(s) 62, 299, 394
SmiMI CAYNNNNRTG 1 cut(s) 948
SmlI CTYRAG 4 cut(s) 62, 299, 394, 922
SmoI CTYRAG 4 cut(s) 62, 299, 394, 922
Sse9I AATT 6 cut(s) 402, 520, 527, 602, 775, 868
SspDI GGCGCC 1 cut(s) 407
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 208, 250, 745
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 135
TaqII GACCGA 4 cut(s) 302, 398, 652, 1025
TasI AATT 6 cut(s) 402, 520, 527, 602, 775, 868
TatI WGTACW 3 cut(s) 37, 729, 1023
TauI GCSGC 5 cut(s) 216, 371, 542, 554, 720
TfiI GAWTC 3 cut(s) 491, 533, 670
TseI GCWGC 4 cut(s) 246, 597, 750, 852
TspGWI ACGGA 4 cut(s) 160, 559, 560, 574
VneI GTGCAC 1 cut(s) 755
VpaK11BI GGWCC 4 cut(s) 70, 314, 816, 1008
XapI RAATTY 1 cut(s) 602
XceI RCATGY 2 cut(s) 784, 995
XhoI CTCGAG 3 cut(s) 62, 299, 394
XmiI GTMKAC 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.