Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Forward (+)

21130501 .. 21130998

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1102200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATCCAAAACGTCTGTTGGAAGACCAAGTGCTACAAGGTCAACCCTTCCGTCATCTCCGATCTCCTTGCCGGCTCCTCTGAGCCTTCCGGCGGCTGGGTCGCCCTTCACAAGCTCGTTGTCTGTTGCCCCGGCCTCATCCACTCCGGCATCCTCTTCGAGAACTCCGACTTTGGGCTCGAGCCTGAGCTCGGTCCCGACGAGGATTATCGGAGTTTGGACTCCAGTCCGGTCGGCGTATCTCCAGCGGCCAAGCCTCTGACCGAGGCGTCCTCGAGCCAAATTGGCGCAAATCAGGAGGGTGGTTCCTCTGGAAATGATTGTTCTTGGTCTCTGTTCGATGATCTTTATTTTGATACAGTCTATAACGATTCTGAAGCCCATGATCAAGAGCAAGATAATTCCCAATTAGAATCAGCGGCCACGGAGGCGGCGGATAATCAAGTCTCCGTCGATAATGGCTCCGTTCGAGTGGGCAGCGAATTTTGGATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

166

Amino Acids

17.64

Weight (kDa)

4.05

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	268
AciI	CCGC	5 cut(s)	93, 248, 419, 431, 434
AcoI	YGGCCR	2 cut(s)	249, 420
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	92, 96, 174, 191
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	336, 451
Ama87I	CYCGRG	2 cut(s)	179, 274
AoxI	GGCC	3 cut(s)	133, 249, 420
ApeKI	GCWGC	1 cut(s)	477
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	132
AvaI	CYCGRG	2 cut(s)	179, 274
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	180, 192
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	489
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 139, 173
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	336, 451
BglI	GCCNNNNNGGC	2 cut(s)	285, 428
BisI	GCNGC	5 cut(s)	94, 249, 420, 432, 478
BlsI	GCNGC	5 cut(s)	95, 250, 421, 433, 479
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	2 cut(s)	179, 274
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	4 cut(s)	76, 196, 307, 463
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	159
BoxI	GACNNNNGTC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	2 cut(s)	208, 228
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	130, 264, 423
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 96, 174, 191
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	130, 264, 423
BseGI	GGATG	2 cut(s)	138, 150
BseLI	CCNNNNNNNGG	4 cut(s)	92, 96, 174, 191
BseMII	CTCAG	2 cut(s)	72, 177
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	489
BseYI	CCCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	135, 251, 422
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	2 cut(s)	179, 274
BsiSI	CCGG	5 cut(s)	72, 90, 132, 147, 230
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	4 cut(s)	92, 96, 174, 191
BsmAI	GTCTC	2 cut(s)	336, 451
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	135, 251, 422
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	2 cut(s)	179, 274
Bsp1286I	GDGCHC	2 cut(s)	180, 192
Bsp143I	GATC	4 cut(s)	3, 61, 343, 385
BspACI	CCGC	5 cut(s)	93, 248, 419, 431, 434
BspANI	GGCC	3 cut(s)	135, 251, 422
BspCNI	CTCAG	2 cut(s)	73, 178
BspLI	GGNNCC	4 cut(s)	76, 196, 307, 463
BspTNI	GGTCTC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	130, 264, 423
BssMI	GATC	4 cut(s)	3, 61, 343, 385
BssNI	GRCGYC	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	81, 186
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	138, 150
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	6, 64, 346, 388
BstMAI	GTCTC	2 cut(s)	336, 451
BstMBI	GATC	4 cut(s)	3, 61, 343, 385
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 428
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	135, 251, 422
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	138, 150
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	258
CviAII	CATG	1 cut(s)	383
DdeI	CTNAG	2 cut(s)	81, 186
DpnI	GATC	4 cut(s)	5, 63, 345, 387
DpnII	GATC	4 cut(s)	3, 61, 343, 385
DrdI	GACNNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	268
EaeI	YGGCCR	2 cut(s)	249, 420
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	180, 192
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	2 cut(s)	179, 274
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	180, 192
FaeI	CATG	1 cut(s)	386
FaiI	YATR	2 cut(s)	366, 384
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	5 cut(s)	94, 249, 420, 432, 478
FokI	GGATG	2 cut(s)	125, 137
FriOI	GRGCYC	2 cut(s)	180, 192
Fsp4HI	GCNGC	5 cut(s)	94, 249, 420, 432, 478
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	94, 249, 420, 432, 478
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	208, 228
HaeIII	GGCC	3 cut(s)	135, 251, 422
HapII	CCGG	5 cut(s)	72, 90, 132, 147, 230
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	221, 371, 413
HpaII	CCGG	5 cut(s)	72, 90, 132, 147, 230
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	6 cut(s)	61, 82, 169, 213, 261, 376
Hpy188III	TCNNGA	5 cut(s)	160, 197, 296, 312, 389
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	203, 455
HpyAV	CCTTC	3 cut(s)	57, 96, 116
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 428
HpyF3I	CTNAG	2 cut(s)	81, 186
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	3, 61, 343, 385
LmnI	GCTCC	2 cut(s)	80, 467
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	12
MalI	GATC	4 cut(s)	5, 63, 345, 387
MboI	GATC	4 cut(s)	3, 61, 343, 385
MboII	GAAGA	2 cut(s)	34, 148
MhlI	GDGCHC	2 cut(s)	180, 192
MluCI	AATT	4 cut(s)	282, 400, 407, 482
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	192
MroNI	GCCGGC	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	248, 419
MspI	CCGG	5 cut(s)	72, 90, 132, 147, 230
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	285, 428
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	3, 61, 343, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	4 cut(s)	76, 196, 307, 463
PaeR7I	CTCGAG	2 cut(s)	179, 274
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 198
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	371, 413
PkrI	GCNGC	5 cut(s)	95, 250, 421, 433, 479
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PshAI	GACNNNNGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	76, 196, 307, 463
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	2 cut(s)	179, 274
SacI	GAGCTC	1 cut(s)	192
SatI	GCNGC	5 cut(s)	94, 249, 420, 432, 478
Sau3AI	GATC	4 cut(s)	3, 61, 343, 385
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	180, 192
SetI	ASST	4 cut(s)	15, 42, 117, 192
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	2 cut(s)	179, 274
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	2 cut(s)	179, 274
SmlI	CTYRAG	2 cut(s)	179, 274
SmoI	CTYRAG	2 cut(s)	179, 274
Sse9I	AATT	4 cut(s)	282, 400, 407, 482
SsiI	CCGC	5 cut(s)	93, 248, 419, 431, 434
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	159, 180, 275, 339, 453, 469
TaqII	GACCGA	2 cut(s)	182, 278
TasI	AATT	4 cut(s)	282, 400, 407, 482
TauI	GCSGC	4 cut(s)	96, 251, 422, 434
TfiI	GAWTC	2 cut(s)	371, 413
TseI	GCWGC	1 cut(s)	477
TspGWI	ACGGA	4 cut(s)	40, 439, 440, 454
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	482
XhoI	CTCGAG	2 cut(s)	179, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.