Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Forward (+)

21131053 .. 21131349

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1102300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGCCATGAGCAAGGCAATGAGCTTCTCCATAGCCGGTTCCGTGGCAATTGCTTGTACATTTGTGATTGGCCCGGCTGCGTGCACATCGAAGAGAAACGAAATTACATGCTTTTCAGAGGGATTTTCAAGGATTTCAAGGCGTTCCAAGTGTGGAGGACAATCAAGGATGGGAACCGCAGCAAGATTGATCTGAATCGCGCATTTTGCACCTGCAAATACACTTGGGATTTGCATTCTGTATTCTGCTTGAGGCGGGTTTTCGTGTACCATGACGATGGCGAGCCAGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

99

Amino Acids

11.81

Weight (kDa)

8.58

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	178, 256
AfaI	GTAC	2 cut(s)	59, 269
AgsI	TTSAA	2 cut(s)	130, 139
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	87
Alw44I	GTGCAC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	78, 180
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	65, 192
BccI	CCATC	2 cut(s)	164, 272
BcnI	CCSGG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	79, 181
BlsI	GCNGC	2 cut(s)	80, 182
Bme1390I	CCNGG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	41, 176
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	65, 192
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	37, 75
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	178, 256
BspANI	GGCC	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	41, 176
BspMI	ACCTGC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	83, 284
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	65, 192
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	83, 284
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	58, 268
CviAII	CATG	3 cut(s)	8, 109, 272
CviJI	RGCY	6 cut(s)	6, 25, 36, 73, 78, 286
CviKI_1	RGCY	6 cut(s)	6, 25, 36, 73, 78, 286
CviQI	GTAC	2 cut(s)	58, 268
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
FaeI	CATG	3 cut(s)	11, 112, 275
FaiI	YATR	4 cut(s)	9, 33, 110, 273
FatI	CATG	3 cut(s)	7, 108, 271
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	79, 181
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	79, 181
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	79, 181
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	37, 75
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	11, 112, 275
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	2 cut(s)	37, 75
Hpy166II	GTNNAC	2 cut(s)	85, 268
Hpy188I	TCNGA	2 cut(s)	119, 195
Hpy8I	GTNNAC	2 cut(s)	85, 268
HpyCH4V	TGCA	4 cut(s)	85, 210, 216, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	11, 112, 275
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	50, 88, 226
Lsp1109I	GCAGC	2 cut(s)	65, 192
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	49, 103
MnlI	CCTC	3 cut(s)	113, 150, 246
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	2 cut(s)	37, 75
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	235
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	11, 112, 275
NlaIV	GGNNCC	2 cut(s)	41, 176
NspI	RCATGY	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	221
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	80, 182
PspN4I	GGNNCC	2 cut(s)	41, 176
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	59, 269
RsaNI	GTAC	2 cut(s)	58, 268
RseI	CAYNNNNRTG	1 cut(s)	276
SatI	GCNGC	2 cut(s)	79, 181
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	2 cut(s)	27, 215
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	49, 103
SsiI	CCGC	2 cut(s)	178, 256
StyD4I	CCNGG	1 cut(s)	73
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	49, 103
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	78, 180
TspGWI	ACGGA	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	83
XceI	RCATGY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.