Rh6AG352100

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
55089428 .. 55090670
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG352100.1

Sequence Viewer

Length: 975 bp
ATGAATTCCGACTCCGTGTTCTCGACGCTTCCGGACGACGTCGTCCTGAACTTGTTCTCCAAGCTGGAGGACGACCCTCGCAACTGGGCCCGCCTCGCCTGCGCCTGCACAAAATTCGCCTCCCTCATTCGCAACGTCTGCTGGAAGACCAAGTGCCGCAACCTCCTCCCCTCCGATCTCGTCTCCGCCGCCTCCTCCTCCGAGCCCCCCGGCGGCTGGTCCTCCCTCCACAAGCTGGCAGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTCCTCTTCGAGAATTCCGATTTCGGCCTCGAACGCGAGCTCGGCCCCGACGAGAGTTACCGCCCCCAATCGCAATCGGAGCCCTCCTCCTCCTCCTCCTCCTCCAGCCAAATTCACCAACCACCGTCGCCGCCGCCGGCTTCCGATTGCGCTTGGTCTCTGTACGACGATCTGTATTTCGATACGGTTTACGACGAGTCCGAATCGGATGCTGTTGCTGCCCCCGAGAACGGCGTCGTTTCAGTGGGCGGTGAGTTTCCGATTCAAAAAAGGCGAAAGATCTGCAGGTCGATGAGGTCGCATTTGGCTTCCGGGGTCTGGAATCTGAGCCGCGAGCAAGGCAACAAGCTTCTCCACAGCCGGTTTCGCGGCGATTGCCTCTACATCTGTGACTGGCCTGGGTGTGTTCACATTGAAGAGAAGCGGAATTACATGCTTTTCAGAGGGGTTTTCAAGGACTTCAAAGGCTCTCAAGTGTGGAGGAACATCAAGGACGCCAAGAGGACCAAAGTCGACCTCAATTGCGCCTACTGCGCCTGCAAGCAGACTTGGGATTTGCATTCCGCCTTCTGCTTGAGACGCGGTTTCGGCTACCATGACGATGGCGAACCCGTTGTCAGGGCTTATGTGTGCGACAATGGACATGTCTCTGGGGCCTGGACCGACTTGCCATTGTTCAAATCTTACGGAGATTGGCTCATGTAA

Protein Analysis

324

Amino Acids

36.33

Weight (kDa)

6.15

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 53 2.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 783
AccII CGCG 4 cut(s) 306, 603, 639, 852
AccIII TCCGGA 1 cut(s) 31
AcsI RAATTY 4 cut(s) 4, 113, 283, 381
AcyI GRCGYC 4 cut(s) 39, 270, 504, 765
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 500, 588, 888
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 5 cut(s) 536, 686, 724, 733, 949
AjnI CCWGG 2 cut(s) 667, 926
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 64, 235, 310, 619
AluI AGCT 4 cut(s) 64, 235, 310, 619
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 4 cut(s) 187, 432, 841, 922
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 6 cut(s) 87, 253, 295, 313, 665, 924
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 246, 488
ApoI RAATTY 4 cut(s) 4, 113, 283, 381
ArsI GACNNNNNNTTYG 4 cut(s) 808, 840, 870, 902
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 104, 422, 797, 806
AspS9I GGNCC 7 cut(s) 87, 88, 219, 314, 774, 924, 930
AsuC2I CCSGG 3 cut(s) 210, 252, 583
AsuHPI GGTGA 2 cut(s) 377, 533
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 3 cut(s) 219, 774, 930
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 4 cut(s) 91, 207, 312, 354
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 233, 475
BccI CCATC 1 cut(s) 866
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 461, 495, 534, 568
BciT130I CCWGG 2 cut(s) 669, 928
BcnI CCSGG 3 cut(s) 210, 252, 583
BcoDI GTCTC 4 cut(s) 187, 432, 841, 922
BfmI CTRYAG 1 cut(s) 553
BfuAI ACCTGC 1 cut(s) 546
BglII AGATCT 1 cut(s) 549
BisI GCNGC 9 cut(s) 157, 189, 214, 247, 401, 404, 489, 601, 640
BlsI GCNGC 9 cut(s) 158, 190, 215, 248, 402, 405, 490, 602, 641
Bme1390I CCNGG 5 cut(s) 210, 252, 583, 669, 928
Bme18I GGWCC 3 cut(s) 219, 774, 930
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 7 cut(s) 87, 88, 219, 314, 774, 924, 930
BmiI GGNNCC 4 cut(s) 89, 316, 351, 925
BmrFI CCNGG 5 cut(s) 210, 252, 583, 669, 928
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 779
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 3 cut(s) 341, 373, 951
BpmI CTGGAG 2 cut(s) 86, 358
BpuEI CTTGAG 2 cut(s) 726, 865
BpuMI CCSGG 3 cut(s) 210, 252, 583
BsaHI GRCGYC 4 cut(s) 39, 270, 504, 765
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 208, 250, 582, 668
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 235, 500, 588, 888
Bse118I RCCGGY 2 cut(s) 406, 630
Bse1I ACTGG 2 cut(s) 89, 668
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 669, 928
BseDI CCNNGG 4 cut(s) 208, 250, 582, 668
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 500, 588, 888
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 2 cut(s) 89, 668
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 233, 475
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 4 cut(s) 306, 603, 639, 852
BshFI GGCC 6 cut(s) 89, 255, 297, 315, 667, 926
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 7 cut(s) 32, 210, 252, 267, 407, 582, 631
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 500, 588, 888
BsmAI GTCTC 4 cut(s) 187, 432, 841, 922
BsmBI CGTCTC 2 cut(s) 187, 841
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 6 cut(s) 89, 255, 297, 315, 667, 926
Bso31I GGTCTC 1 cut(s) 432
BsoBI CYCGRG 1 cut(s) 494
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 4 cut(s) 91, 207, 312, 354
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 175, 439, 549
BspANI GGCC 6 cut(s) 89, 255, 297, 315, 667, 926
BspCNI CTCAG 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 4 cut(s) 306, 603, 639, 852
BspLI GGNNCC 4 cut(s) 89, 316, 351, 925
BspMAI CTGCAG 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 546
BspTNI GGTCTC 1 cut(s) 432
BsrFI RCCGGY 2 cut(s) 406, 630
BsrI ACTGG 2 cut(s) 89, 668
BssAI RCCGGY 2 cut(s) 406, 630
BssECI CCNNGG 4 cut(s) 208, 250, 582, 668
BssMI GATC 3 cut(s) 175, 439, 549
BssNI GRCGYC 4 cut(s) 39, 270, 504, 765
Bst2UI CCWGG 2 cut(s) 669, 928
Bst4CI ACNGT 2 cut(s) 396, 457
Bst6I CTCTTC 2 cut(s) 281, 681
BstACI GRCGYC 4 cut(s) 39, 270, 504, 765
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 408, 605, 808, 812
BstDEI CTNAG 1 cut(s) 596
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 4 cut(s) 306, 603, 639, 852
BstHHI GCGC 4 cut(s) 104, 422, 797, 806
BstKTI GATC 3 cut(s) 178, 442, 552
BstMAI GTCTC 4 cut(s) 187, 432, 841, 922
BstMBI GATC 3 cut(s) 175, 439, 549
BstNI CCWGG 2 cut(s) 669, 928
BstNSI RCATGY 2 cut(s) 706, 917
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 5 cut(s) 208, 250, 581, 667, 926
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 4 cut(s) 306, 603, 639, 852
BstV1I GCAGC 2 cut(s) 233, 475
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 1 cut(s) 549
BsuRI GGCC 6 cut(s) 89, 255, 297, 315, 667, 926
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 519
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 408, 605, 808, 812
CfoI GCGC 4 cut(s) 104, 422, 797, 806
Cfr10I RCCGGY 2 cut(s) 406, 630
Cfr13I GGNCC 7 cut(s) 87, 88, 219, 314, 774, 924, 930
CseI GACGC 5 cut(s) 34, 259, 493, 773, 858
Csp6I GTAC 1 cut(s) 433
CviAII CATG 4 cut(s) 703, 866, 914, 970
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 1 cut(s) 596
DpnI GATC 3 cut(s) 177, 441, 551
DpnII GATC 3 cut(s) 175, 439, 549
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 281, 681
EarI CTCTTC 2 cut(s) 281, 681
EciI GGCGGA 2 cut(s) 175, 823
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 4 cut(s) 91, 207, 312, 354
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 3 cut(s) 219, 774, 930
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 924
EcoRI GAATTC 2 cut(s) 4, 283
EcoRII CCWGG 2 cut(s) 667, 926
EcoT38I GRGCYC 4 cut(s) 91, 207, 312, 354
Esp3I CGTCTC 2 cut(s) 187, 841
FaeI CATG 4 cut(s) 706, 869, 917, 973
FaiI YATR 5 cut(s) 704, 867, 897, 915, 971
FatI CATG 4 cut(s) 702, 865, 913, 969
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 9 cut(s) 157, 189, 214, 247, 401, 404, 489, 601, 640
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 4 cut(s) 91, 207, 312, 354
Fsp4HI GCNGC 9 cut(s) 157, 189, 214, 247, 401, 404, 489, 601, 640
GlaI GCGC 4 cut(s) 103, 421, 796, 805
GluI GCNGC 9 cut(s) 157, 189, 214, 247, 401, 404, 489, 601, 640
GsuI CTGGAG 2 cut(s) 86, 358
HaeIII GGCC 6 cut(s) 89, 255, 297, 315, 667, 926
HapII CCGG 7 cut(s) 32, 210, 252, 267, 407, 582, 631
HgaI GACGC 5 cut(s) 34, 259, 493, 773, 858
HhaI GCGC 4 cut(s) 104, 422, 797, 806
Hin1I GRCGYC 4 cut(s) 39, 270, 504, 765
Hin1II CATG 4 cut(s) 706, 869, 917, 973
Hin6I GCGC 4 cut(s) 102, 420, 795, 804
HinP1I GCGC 4 cut(s) 102, 420, 795, 804
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 5 cut(s) 11, 467, 473, 532, 592
HpaII CCGG 7 cut(s) 32, 210, 252, 267, 407, 582, 631
HphI GGTGA 2 cut(s) 377, 533
Hpy166II GTNNAC 3 cut(s) 460, 679, 784
Hpy188III TCNNGA 5 cut(s) 22, 32, 46, 280, 589
Hpy8I GTNNAC 3 cut(s) 460, 679, 784
Hpy99I CGWCG 8 cut(s) 28, 41, 44, 323, 400, 440, 467, 509
HpyAV CCTTC 1 cut(s) 847
HpyCH4III ACNGT 2 cut(s) 396, 457
HpyCH4IV ACGT 2 cut(s) 39, 135
HpyCH4V TGCA 4 cut(s) 108, 555, 810, 829
HpyF3I CTNAG 1 cut(s) 596
HpySE526I ACGT 2 cut(s) 39, 135
Hsp92I GRCGYC 4 cut(s) 39, 270, 504, 765
Hsp92II CATG 4 cut(s) 706, 869, 917, 973
HspAI GCGC 4 cut(s) 102, 420, 795, 804
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 3 cut(s) 175, 439, 549
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 233, 475
LweI GCATC 1 cut(s) 469
MaeII ACGT 2 cut(s) 39, 135
MaeIII GTNAC 2 cut(s) 326, 659
MalI GATC 3 cut(s) 177, 441, 551
MboI GATC 3 cut(s) 175, 439, 549
MboII GAAGA 3 cut(s) 157, 268, 698
MfeI CAATTG 1 cut(s) 790
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 4 cut(s) 91, 207, 312, 354
MluCI AATT 6 cut(s) 4, 113, 283, 381, 697, 790
MlyI GAGTC 2 cut(s) 5, 476
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 870
MspI CCGG 7 cut(s) 32, 210, 252, 267, 407, 582, 631
MspR9I CCNGG 5 cut(s) 210, 252, 583, 669, 928
MunI CAATTG 1 cut(s) 790
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 2 cut(s) 669, 928
MvnI CGCG 4 cut(s) 306, 603, 639, 852
NaeI GCCGGC 1 cut(s) 408
NciI CCSGG 3 cut(s) 210, 252, 583
NdeII GATC 3 cut(s) 175, 439, 549
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 4 cut(s) 706, 869, 917, 973
NlaIV GGNNCC 4 cut(s) 89, 316, 351, 925
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 659
NspI RCATGY 2 cut(s) 706, 917
PciI ACATGT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 318, 468
PctI GAATGC 1 cut(s) 829
PdiI GCCGGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 473, 532, 592
PflFI GACNNNGTC 2 cut(s) 38, 41
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 9 cut(s) 158, 190, 215, 248, 402, 405, 490, 602, 641
PleI GAGTC 2 cut(s) 5, 475
PpsI GAGTC 2 cut(s) 5, 475
PscI ACATGT 1 cut(s) 913
PshAI GACNNNNGTC 1 cut(s) 779
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 667, 926
PspGI CCWGG 2 cut(s) 667, 926
PspN4I GGNNCC 4 cut(s) 89, 316, 351, 925
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 7 cut(s) 87, 88, 219, 314, 774, 924, 930
PstI CTGCAG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 549
PsyI GACNNNGTC 2 cut(s) 38, 41
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 782
SatI GCNGC 9 cut(s) 157, 189, 214, 247, 401, 404, 489, 601, 640
Sau3AI GATC 3 cut(s) 175, 439, 549
Sau96I GGNCC 7 cut(s) 87, 88, 219, 314, 774, 924, 930
SchI GAGTC 2 cut(s) 5, 476
ScrFI CCNGG 5 cut(s) 210, 252, 583, 669, 928
SduI GDGCHC 4 cut(s) 91, 207, 312, 354
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 553
SinI GGWCC 3 cut(s) 219, 774, 930
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 2 cut(s) 741, 844
SmoI CTYRAG 2 cut(s) 741, 844
Sse9I AATT 6 cut(s) 4, 113, 283, 381, 697, 790
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 208, 250, 581, 667, 926
TaaI ACNGT 2 cut(s) 396, 457
TaiI ACGT 2 cut(s) 42, 138
TaqI TCGA 6 cut(s) 23, 279, 300, 450, 560, 783
TaqII GACCGA 1 cut(s) 947
TasI AATT 6 cut(s) 4, 113, 283, 381, 697, 790
TauI GCSGC 7 cut(s) 159, 191, 216, 403, 406, 603, 642
TfiI GAWTC 3 cut(s) 473, 532, 592
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 2 cut(s) 246, 488
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 4, 972
TspRI CASTG 1 cut(s) 519
Tth111I GACNNNGTC 2 cut(s) 38, 41
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 219, 774, 930
XapI RAATTY 4 cut(s) 4, 113, 283, 381
XceI RCATGY 2 cut(s) 706, 917
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 53
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.