Rw6G030640

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
54716113 .. 54717114
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030640.1

Sequence Viewer

Length: 1002 bp
ATGAATTCCGACTCCGTGTTCTCGACGCTTCCGGACGACGTCGTCCTGAACTTGTTCTCCAAGCTGGAGGACGACCCTCGCAACTGGGCCCGCCTCGCCTGCGCCTGCACAAAATTCGCCTCCCTCATTCGCAACGTCTGCTGGAAGACCAAGTGCCGCAACCTCCTCCCCTCCGATCTCGTCTCCGCCGCCTCCTCCTCCGAGCCCCCCGGCGGCTGGTCCTCCCTCCACAAGCTGGCAGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTCCTCTTCGAGAATTCCGATTTCGGCCTCGAACGCGAGCTCGGCCCCGACGAGAATTACCGCCCCCAATCGGAATCGGAGCCCTCCTCCTCCTCCCTCGGCCCCGACGAGAATTACCGCCCCCAATCGGAATCGGAGCCCTCCTCCTCCTCCAGCCAAATTCACCAACCACCGTCGCCGCCGCCGGCTTCCGATTGCGCTTGGTCTCTGTACGACGATCTGTATTTCGATACGGTTTACGACGAGTCCGAATCGGATGCTGTTGCTGCCCCCGAGAACGGCGTCGTTTCAGTGGGCGGTGAGTTTCCGATTCAAAAAAGGCGAAAGATCTGCAGATCGATGAGGTCGCATTTGGCTTCCGGGGTCTGGAATCTGAGCCGCGAGCAAGGCAACAAGCTTCTCCACAGCCGGTTTCGCGGCGATTGCCTCTACATCTGTGACTGGCCTGGGTGTGTTCACATTGAAGAGAAGCGGAATTACATGCTTTTCAGAGGGGTTTTCAAGGACTTCAAAGGCTCTCAAGTGTGGAGGAACATCAAGGACGCCAAGAGGACCAAAGTCGACCTCAATTGCGCCTACTGCGCCTGCAAGCAGACTTGGGATTTGCATTCCGCCTTCTGCTTGAGACGCGGTTTCGGCTACCATGACGATGGCGAACCCGTTGTCAGGGCTTATGTGTGCGACAATGGACATGTCTCTGGGGCCTGGACCGACTTGCCATTGTATGCCTAA

Protein Analysis

333

Amino Acids

37.25

Weight (kDa)

5.63

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 53 2.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 831
AccII CGCG 4 cut(s) 306, 651, 687, 900
AccIII TCCGGA 1 cut(s) 31
AcsI RAATTY 4 cut(s) 4, 113, 283, 429
AcyI GRCGYC 4 cut(s) 39, 270, 552, 813
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 8 cut(s) 212, 216, 235, 340, 397, 548, 636, 936
AflIII ACRYGT 1 cut(s) 961
AgsI TTSAA 4 cut(s) 584, 734, 772, 781
AjnI CCWGG 2 cut(s) 715, 974
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 64, 235, 310, 667
AluI AGCT 4 cut(s) 64, 235, 310, 667
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 4 cut(s) 187, 480, 889, 970
Ama87I CYCGRG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 7 cut(s) 87, 253, 295, 313, 370, 713, 972
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 246, 536
ApoI RAATTY 4 cut(s) 4, 113, 283, 429
ArsI GACNNNNNNTTYG 4 cut(s) 856, 888, 918, 950
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 104, 470, 845, 854
AspS9I GGNCC 8 cut(s) 87, 88, 219, 314, 371, 822, 972, 978
AsuC2I CCSGG 3 cut(s) 210, 252, 631
AsuHPI GGTGA 2 cut(s) 425, 581
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 3 cut(s) 219, 822, 978
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 5 cut(s) 91, 207, 312, 354, 411
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 233, 523
BccI CCATC 1 cut(s) 914
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 509, 543, 582, 616
BciT130I CCWGG 2 cut(s) 717, 976
BcnI CCSGG 3 cut(s) 210, 252, 631
BcoDI GTCTC 4 cut(s) 187, 480, 889, 970
BfmI CTRYAG 1 cut(s) 601
BglII AGATCT 1 cut(s) 597
BisI GCNGC 9 cut(s) 157, 189, 214, 247, 449, 452, 537, 649, 688
BlsI GCNGC 9 cut(s) 158, 190, 215, 248, 450, 453, 538, 650, 689
Bme1390I CCNGG 5 cut(s) 210, 252, 631, 717, 976
Bme18I GGWCC 3 cut(s) 219, 822, 978
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 8 cut(s) 87, 88, 219, 314, 371, 822, 972, 978
BmiI GGNNCC 6 cut(s) 89, 316, 351, 373, 408, 973
BmrFI CCNGG 5 cut(s) 210, 252, 631, 717, 976
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 827
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 4 cut(s) 341, 373, 398, 430
BpmI CTGGAG 2 cut(s) 86, 406
BpuEI CTTGAG 2 cut(s) 774, 913
BpuMI CCSGG 3 cut(s) 210, 252, 631
Bsa29I ATCGAT 1 cut(s) 608
BsaHI GRCGYC 4 cut(s) 39, 270, 552, 813
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 5 cut(s) 208, 250, 367, 630, 716
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 8 cut(s) 212, 216, 235, 340, 397, 548, 636, 936
Bse118I RCCGGY 2 cut(s) 454, 678
Bse1I ACTGG 2 cut(s) 89, 716
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 717, 976
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 5 cut(s) 208, 250, 367, 630, 716
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 8 cut(s) 212, 216, 235, 340, 397, 548, 636, 936
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 2 cut(s) 89, 716
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 233, 523
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 4 cut(s) 306, 651, 687, 900
BshFI GGCC 7 cut(s) 89, 255, 297, 315, 372, 715, 974
BshVI ATCGAT 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 7 cut(s) 32, 210, 252, 267, 455, 630, 679
BslI CCNNNNNNNGG 8 cut(s) 212, 216, 235, 340, 397, 548, 636, 936
BsmAI GTCTC 4 cut(s) 187, 480, 889, 970
BsmBI CGTCTC 2 cut(s) 187, 889
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 7 cut(s) 89, 255, 297, 315, 372, 715, 974
Bso31I GGTCTC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 542
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 5 cut(s) 91, 207, 312, 354, 411
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 4 cut(s) 175, 487, 597, 605
BspANI GGCC 7 cut(s) 89, 255, 297, 315, 372, 715, 974
BspCNI CTCAG 1 cut(s) 636
BspDI ATCGAT 1 cut(s) 608
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 4 cut(s) 306, 651, 687, 900
BspLI GGNNCC 6 cut(s) 89, 316, 351, 373, 408, 973
BspMAI CTGCAG 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 480
BsrFI RCCGGY 2 cut(s) 454, 678
BsrI ACTGG 2 cut(s) 89, 716
BssAI RCCGGY 2 cut(s) 454, 678
BssECI CCNNGG 5 cut(s) 208, 250, 367, 630, 716
BssMI GATC 4 cut(s) 175, 487, 597, 605
BssNI GRCGYC 4 cut(s) 39, 270, 552, 813
Bst2UI CCWGG 2 cut(s) 717, 976
Bst4CI ACNGT 2 cut(s) 444, 505
Bst6I CTCTTC 2 cut(s) 281, 729
BstACI GRCGYC 4 cut(s) 39, 270, 552, 813
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 456, 653, 856, 860
BstDEI CTNAG 1 cut(s) 644
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 4 cut(s) 306, 651, 687, 900
BstHHI GCGC 4 cut(s) 104, 470, 845, 854
BstKTI GATC 4 cut(s) 178, 490, 600, 608
BstMAI GTCTC 4 cut(s) 187, 480, 889, 970
BstMBI GATC 4 cut(s) 175, 487, 597, 605
BstNI CCWGG 2 cut(s) 717, 976
BstNSI RCATGY 2 cut(s) 754, 965
BstPAI GACNNNNGTC 1 cut(s) 827
BstSCI CCNGG 5 cut(s) 208, 250, 629, 715, 974
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 4 cut(s) 306, 651, 687, 900
BstV1I GCAGC 2 cut(s) 233, 523
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 597
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 608
BsuRI GGCC 7 cut(s) 89, 255, 297, 315, 372, 715, 974
BsuTUI ATCGAT 1 cut(s) 608
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 456, 653, 856, 860
CfoI GCGC 4 cut(s) 104, 470, 845, 854
Cfr10I RCCGGY 2 cut(s) 454, 678
Cfr13I GGNCC 8 cut(s) 87, 88, 219, 314, 371, 822, 972, 978
ClaI ATCGAT 1 cut(s) 608
CseI GACGC 5 cut(s) 34, 259, 541, 821, 906
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 751, 914, 962
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 644
DpnI GATC 4 cut(s) 177, 489, 599, 607
DpnII GATC 4 cut(s) 175, 487, 597, 605
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 281, 729
EarI CTCTTC 2 cut(s) 281, 729
EciI GGCGGA 2 cut(s) 175, 871
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 5 cut(s) 91, 207, 312, 354, 411
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 3 cut(s) 219, 822, 978
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 972
EcoRI GAATTC 2 cut(s) 4, 283
EcoRII CCWGG 2 cut(s) 715, 974
EcoT38I GRGCYC 5 cut(s) 91, 207, 312, 354, 411
Esp3I CGTCTC 2 cut(s) 187, 889
FaeI CATG 3 cut(s) 754, 917, 965
FaiI YATR 5 cut(s) 752, 915, 945, 963, 996
FatI CATG 3 cut(s) 750, 913, 961
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 9 cut(s) 157, 189, 214, 247, 449, 452, 537, 649, 688
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 5 cut(s) 91, 207, 312, 354, 411
Fsp4HI GCNGC 9 cut(s) 157, 189, 214, 247, 449, 452, 537, 649, 688
GlaI GCGC 4 cut(s) 103, 469, 844, 853
GluI GCNGC 9 cut(s) 157, 189, 214, 247, 449, 452, 537, 649, 688
GsuI CTGGAG 2 cut(s) 86, 406
HaeIII GGCC 7 cut(s) 89, 255, 297, 315, 372, 715, 974
HapII CCGG 7 cut(s) 32, 210, 252, 267, 455, 630, 679
HgaI GACGC 5 cut(s) 34, 259, 541, 821, 906
HhaI GCGC 4 cut(s) 104, 470, 845, 854
Hin1I GRCGYC 4 cut(s) 39, 270, 552, 813
Hin1II CATG 3 cut(s) 754, 917, 965
Hin6I GCGC 4 cut(s) 102, 468, 843, 852
HinP1I GCGC 4 cut(s) 102, 468, 843, 852
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 7 cut(s) 11, 344, 401, 515, 521, 580, 640
HpaII CCGG 7 cut(s) 32, 210, 252, 267, 455, 630, 679
HphI GGTGA 2 cut(s) 425, 581
Hpy166II GTNNAC 3 cut(s) 508, 727, 832
Hpy188III TCNNGA 5 cut(s) 22, 32, 46, 280, 637
Hpy8I GTNNAC 3 cut(s) 508, 727, 832
Hpy99I CGWCG 9 cut(s) 28, 41, 44, 323, 380, 448, 488, 515, 557
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 2 cut(s) 444, 505
HpyCH4IV ACGT 2 cut(s) 39, 135
HpyCH4V TGCA 4 cut(s) 108, 603, 858, 877
HpyF3I CTNAG 1 cut(s) 644
HpySE526I ACGT 2 cut(s) 39, 135
Hsp92I GRCGYC 4 cut(s) 39, 270, 552, 813
Hsp92II CATG 3 cut(s) 754, 917, 965
HspAI GCGC 4 cut(s) 102, 468, 843, 852
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 4 cut(s) 175, 487, 597, 605
LmnI GCTCC 2 cut(s) 349, 406
Lsp1109I GCAGC 2 cut(s) 233, 523
LweI GCATC 1 cut(s) 517
MaeII ACGT 2 cut(s) 39, 135
MaeIII GTNAC 1 cut(s) 707
MalI GATC 4 cut(s) 177, 489, 599, 607
MboI GATC 4 cut(s) 175, 487, 597, 605
MboII GAAGA 3 cut(s) 157, 268, 746
MfeI CAATTG 1 cut(s) 838
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 5 cut(s) 91, 207, 312, 354, 411
MluCI AATT 8 cut(s) 4, 113, 283, 325, 382, 429, 745, 838
MlyI GAGTC 2 cut(s) 5, 524
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 918
MspI CCGG 7 cut(s) 32, 210, 252, 267, 455, 630, 679
MspR9I CCNGG 5 cut(s) 210, 252, 631, 717, 976
MunI CAATTG 1 cut(s) 838
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 717, 976
MvnI CGCG 4 cut(s) 306, 651, 687, 900
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 3 cut(s) 210, 252, 631
NdeII GATC 4 cut(s) 175, 487, 597, 605
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 3 cut(s) 754, 917, 965
NlaIV GGNNCC 6 cut(s) 89, 316, 351, 373, 408, 973
NmeAIII GCCGAG 2 cut(s) 291, 348
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 2 cut(s) 754, 965
PciI ACATGT 1 cut(s) 961
PcsI WCGNNNNNNNCGW 4 cut(s) 285, 318, 375, 516
PctI GAATGC 1 cut(s) 877
PdiI GCCGGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 5 cut(s) 344, 401, 521, 580, 640
PflFI GACNNNGTC 2 cut(s) 38, 41
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 9 cut(s) 158, 190, 215, 248, 450, 453, 538, 650, 689
PleI GAGTC 2 cut(s) 5, 523
PpsI GAGTC 2 cut(s) 5, 523
PscI ACATGT 1 cut(s) 961
PshAI GACNNNNGTC 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 715, 974
PspGI CCWGG 2 cut(s) 715, 974
PspN4I GGNNCC 6 cut(s) 89, 316, 351, 373, 408, 973
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 8 cut(s) 87, 88, 219, 314, 371, 822, 972, 978
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 597
PsyI GACNNNGTC 2 cut(s) 38, 41
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 830
SatI GCNGC 9 cut(s) 157, 189, 214, 247, 449, 452, 537, 649, 688
Sau3AI GATC 4 cut(s) 175, 487, 597, 605
Sau96I GGNCC 8 cut(s) 87, 88, 219, 314, 371, 822, 972, 978
SchI GAGTC 2 cut(s) 5, 524
ScrFI CCNGG 5 cut(s) 210, 252, 631, 717, 976
SduI GDGCHC 5 cut(s) 91, 207, 312, 354, 411
SetI ASST 9 cut(s) 42, 66, 138, 165, 237, 312, 617, 669, 837
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 3 cut(s) 219, 822, 978
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 789, 892
SmoI CTYRAG 2 cut(s) 789, 892
Sse9I AATT 8 cut(s) 4, 113, 283, 325, 382, 429, 745, 838
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 208, 250, 629, 715, 974
TaaI ACNGT 2 cut(s) 444, 505
TaiI ACGT 2 cut(s) 42, 138
TaqI TCGA 6 cut(s) 23, 279, 300, 498, 608, 831
TaqII GACCGA 1 cut(s) 995
TasI AATT 8 cut(s) 4, 113, 283, 325, 382, 429, 745, 838
TauI GCSGC 7 cut(s) 159, 191, 216, 451, 454, 651, 690
TfiI GAWTC 5 cut(s) 344, 401, 521, 580, 640
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 2 cut(s) 246, 536
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 1 cut(s) 567
Tth111I GACNNNGTC 2 cut(s) 38, 41
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 219, 822, 978
XapI RAATTY 4 cut(s) 4, 113, 283, 429
XceI RCATGY 2 cut(s) 754, 965
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 1 cut(s) 53
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.