Rmu_ssc0000470.1_g000003

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000470.1
Physical Location & Seq
Reverse (-)
7417 .. 8364
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000470.1_g000003.1.cds

Sequence Viewer

Length: 948 bp
atgaattccgactccgtgttctcgacgcttccggacgacgtcgtcctgaacttgttctccaagctggaggacgaccctcgcaactgggcccgcctcgcctgcgcctgcacaaaattcgcctccctcattcgcaacgtctgctggaagaccaagtgccgcaacctcctcccctccgatctcgtctccgccgcctcctcctccgagccccccggcggctggtcctccctccacaagctggcagtctgctgccccggcctcctccactccggcgtcctcttcgagaattccgatttcggcctcgaacgcgagctcggccccgacgagagttaccgcccccaatcgcaatcggagccctcctcctcctcctccagccaaattcaccaaccaccgtcgccgccgccggcttccgattgcgcttggtctctgtacgacgatctgtatttcgatacggtttacgacgagtccgaatcggatgctgttgctgcccccgagaacggcgtcgtttcagtgggcggtgagtttccgattcaaaaaaggcgaaagatctgcaggtcgatgaggtcgcatttggcttccggggtctggaatctgagccgcgagcaaggtaacaagcttctccacagccggtttcgcggcgattgcctctacatctgtgactggcctgggtgtgttcacattgaagagaagcggaattacatgcttttcagaggggttttcaaggacttcaaaggctctcaagtgtggaggaatatcaaggacgccaagaggaccaaagtcgacctcaattgcgcgtactgcgcctgcaagcagacttgggatttgcattccgccttctgcttgagacgcggtttcggctaccatgacgatggcgaacccgttgtcagggcttatgtgtgcgacaatggacatgtctctggggcctggaccgacttgccattgtatgcctaa

Protein Analysis

315

Amino Acids

35.26

Weight (kDa)

6.14

Isoelectric Point (pI)

63.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 777
AccII CGCG 5 cut(s) 306, 597, 633, 791, 846
AccIII TCCGGA 1 cut(s) 31
AcsI RAATTY 4 cut(s) 4, 113, 283, 375
AcyI GRCGYC 4 cut(s) 39, 270, 498, 759
AfaI GTAC 2 cut(s) 428, 794
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 494, 582, 882
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 4 cut(s) 530, 680, 718, 727
AjnI CCWGG 2 cut(s) 661, 920
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 64, 235, 310, 613
AluI AGCT 4 cut(s) 64, 235, 310, 613
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 4 cut(s) 187, 426, 835, 916
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 6 cut(s) 87, 253, 295, 313, 659, 918
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 246, 482
ApoI RAATTY 4 cut(s) 4, 113, 283, 375
ArsI GACNNNNNNTTYG 4 cut(s) 802, 834, 864, 896
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 104, 416, 791, 800
AspS9I GGNCC 7 cut(s) 87, 88, 219, 314, 768, 918, 924
AsuC2I CCSGG 3 cut(s) 210, 252, 577
AsuHPI GGTGA 2 cut(s) 371, 527
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 3 cut(s) 219, 768, 924
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 4 cut(s) 91, 207, 312, 354
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 233, 469
BccI CCATC 1 cut(s) 860
BceAI ACGGC 1 cut(s) 511
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 455, 489, 528, 562
BciT130I CCWGG 2 cut(s) 663, 922
BcnI CCSGG 3 cut(s) 210, 252, 577
BcoDI GTCTC 4 cut(s) 187, 426, 835, 916
BfmI CTRYAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 540
BglII AGATCT 1 cut(s) 543
BisI GCNGC 9 cut(s) 157, 189, 214, 247, 395, 398, 483, 595, 634
BlsI GCNGC 9 cut(s) 158, 190, 215, 248, 396, 399, 484, 596, 635
Bme1390I CCNGG 5 cut(s) 210, 252, 577, 663, 922
Bme18I GGWCC 3 cut(s) 219, 768, 924
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 7 cut(s) 87, 88, 219, 314, 768, 918, 924
BmiI GGNNCC 4 cut(s) 89, 316, 351, 919
BmrFI CCNGG 5 cut(s) 210, 252, 577, 663, 922
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 2 cut(s) 86, 352
BpuEI CTTGAG 2 cut(s) 720, 859
BpuMI CCSGG 3 cut(s) 210, 252, 577
BsaHI GRCGYC 4 cut(s) 39, 270, 498, 759
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 4 cut(s) 208, 250, 576, 662
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 235, 494, 582, 882
Bse118I RCCGGY 2 cut(s) 400, 624
Bse1I ACTGG 2 cut(s) 89, 662
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 663, 922
BseDI CCNNGG 4 cut(s) 208, 250, 576, 662
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 494, 582, 882
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 89, 662
BseRI GAGGAG 8 cut(s) 155, 184, 187, 248, 346, 349, 352, 355
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 233, 469
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 5 cut(s) 306, 597, 633, 791, 846
BshFI GGCC 6 cut(s) 89, 255, 297, 315, 661, 920
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 7 cut(s) 32, 210, 252, 267, 401, 576, 625
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 494, 582, 882
BsmAI GTCTC 4 cut(s) 187, 426, 835, 916
BsmBI CGTCTC 2 cut(s) 187, 835
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 6 cut(s) 89, 255, 297, 315, 661, 920
Bso31I GGTCTC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 488
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 4 cut(s) 91, 207, 312, 354
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 175, 433, 543
BspANI GGCC 6 cut(s) 89, 255, 297, 315, 661, 920
BspCNI CTCAG 1 cut(s) 582
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 5 cut(s) 306, 597, 633, 791, 846
BspLI GGNNCC 4 cut(s) 89, 316, 351, 919
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 426
BsrFI RCCGGY 2 cut(s) 400, 624
BsrI ACTGG 2 cut(s) 89, 662
BssAI RCCGGY 2 cut(s) 400, 624
BssECI CCNNGG 4 cut(s) 208, 250, 576, 662
BssMI GATC 3 cut(s) 175, 433, 543
BssNI GRCGYC 4 cut(s) 39, 270, 498, 759
Bst2UI CCWGG 2 cut(s) 663, 922
Bst4CI ACNGT 2 cut(s) 390, 451
Bst6I CTCTTC 2 cut(s) 281, 675
BstACI GRCGYC 4 cut(s) 39, 270, 498, 759
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 402, 599, 802, 806
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 5 cut(s) 306, 597, 633, 791, 846
BstHHI GCGC 4 cut(s) 104, 416, 791, 800
BstKTI GATC 3 cut(s) 178, 436, 546
BstMAI GTCTC 4 cut(s) 187, 426, 835, 916
BstMBI GATC 3 cut(s) 175, 433, 543
BstNI CCWGG 2 cut(s) 663, 922
BstNSI RCATGY 2 cut(s) 700, 911
BstPAI GACNNNNGTC 1 cut(s) 773
BstSCI CCNGG 5 cut(s) 208, 250, 575, 661, 920
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 5 cut(s) 306, 597, 633, 791, 846
BstV1I GCAGC 2 cut(s) 233, 469
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 543
BstXI CCANNNNNNTGG 1 cut(s) 866
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 6 cut(s) 89, 255, 297, 315, 661, 920
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 513
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 402, 599, 802, 806
CfoI GCGC 4 cut(s) 104, 416, 791, 800
Cfr10I RCCGGY 2 cut(s) 400, 624
Cfr13I GGNCC 7 cut(s) 87, 88, 219, 314, 768, 918, 924
CseI GACGC 5 cut(s) 34, 259, 487, 767, 852
Csp6I GTAC 2 cut(s) 427, 793
CviAII CATG 3 cut(s) 697, 860, 908
CviQI GTAC 2 cut(s) 427, 793
DdeI CTNAG 1 cut(s) 590
DpnI GATC 3 cut(s) 177, 435, 545
DpnII GATC 3 cut(s) 175, 433, 543
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 281, 675
EarI CTCTTC 2 cut(s) 281, 675
EciI GGCGGA 2 cut(s) 175, 817
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 4 cut(s) 91, 207, 312, 354
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 219, 768, 924
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 918
EcoRI GAATTC 2 cut(s) 4, 283
EcoRII CCWGG 2 cut(s) 661, 920
EcoT38I GRGCYC 4 cut(s) 91, 207, 312, 354
Esp3I CGTCTC 2 cut(s) 187, 835
FaeI CATG 3 cut(s) 700, 863, 911
FaiI YATR 5 cut(s) 698, 861, 891, 909, 942
FatI CATG 3 cut(s) 696, 859, 907
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 9 cut(s) 157, 189, 214, 247, 395, 398, 483, 595, 634
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 4 cut(s) 91, 207, 312, 354
Fsp4HI GCNGC 9 cut(s) 157, 189, 214, 247, 395, 398, 483, 595, 634
GlaI GCGC 4 cut(s) 103, 415, 790, 799
GluI GCNGC 9 cut(s) 157, 189, 214, 247, 395, 398, 483, 595, 634
GsuI CTGGAG 2 cut(s) 86, 352
HaeIII GGCC 6 cut(s) 89, 255, 297, 315, 661, 920
HapII CCGG 7 cut(s) 32, 210, 252, 267, 401, 576, 625
HgaI GACGC 5 cut(s) 34, 259, 487, 767, 852
HhaI GCGC 4 cut(s) 104, 416, 791, 800
Hin1I GRCGYC 4 cut(s) 39, 270, 498, 759
Hin1II CATG 3 cut(s) 700, 863, 911
Hin6I GCGC 4 cut(s) 102, 414, 789, 798
HinP1I GCGC 4 cut(s) 102, 414, 789, 798
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 5 cut(s) 11, 461, 467, 526, 586
HpaII CCGG 7 cut(s) 32, 210, 252, 267, 401, 576, 625
HphI GGTGA 2 cut(s) 371, 527
Hpy166II GTNNAC 3 cut(s) 454, 673, 778
Hpy188III TCNNGA 5 cut(s) 22, 32, 46, 280, 583
Hpy8I GTNNAC 3 cut(s) 454, 673, 778
Hpy99I CGWCG 8 cut(s) 28, 41, 44, 323, 394, 434, 461, 503
HpyAV CCTTC 1 cut(s) 841
HpyCH4III ACNGT 2 cut(s) 390, 451
HpyCH4IV ACGT 2 cut(s) 39, 135
HpyCH4V TGCA 4 cut(s) 108, 549, 804, 823
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 2 cut(s) 39, 135
Hsp92I GRCGYC 4 cut(s) 39, 270, 498, 759
Hsp92II CATG 3 cut(s) 700, 863, 911
HspAI GCGC 4 cut(s) 102, 414, 789, 798
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 175, 433, 543
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 233, 469
LweI GCATC 1 cut(s) 463
MaeII ACGT 2 cut(s) 39, 135
MaeIII GTNAC 3 cut(s) 326, 605, 653
MalI GATC 3 cut(s) 177, 435, 545
MboI GATC 3 cut(s) 175, 433, 543
MboII GAAGA 3 cut(s) 157, 268, 692
MfeI CAATTG 1 cut(s) 784
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 4 cut(s) 91, 207, 312, 354
MluCI AATT 6 cut(s) 4, 113, 283, 375, 691, 784
MlyI GAGTC 2 cut(s) 5, 470
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 864
MspI CCGG 7 cut(s) 32, 210, 252, 267, 401, 576, 625
MspR9I CCNGG 5 cut(s) 210, 252, 577, 663, 922
MunI CAATTG 1 cut(s) 784
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 2 cut(s) 663, 922
MvnI CGCG 5 cut(s) 306, 597, 633, 791, 846
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 3 cut(s) 210, 252, 577
NdeII GATC 3 cut(s) 175, 433, 543
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 700, 863, 911
NlaIV GGNNCC 4 cut(s) 89, 316, 351, 919
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 653
NspI RCATGY 2 cut(s) 700, 911
PciI ACATGT 1 cut(s) 907
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 318, 462
PctI GAATGC 1 cut(s) 823
PdiI GCCGGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 467, 526, 586
PflFI GACNNNGTC 2 cut(s) 38, 41
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 9 cut(s) 158, 190, 215, 248, 396, 399, 484, 596, 635
PleI GAGTC 2 cut(s) 5, 469
PpsI GAGTC 2 cut(s) 5, 469
PscI ACATGT 1 cut(s) 907
PshAI GACNNNNGTC 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 661, 920
PspGI CCWGG 2 cut(s) 661, 920
PspN4I GGNNCC 4 cut(s) 89, 316, 351, 919
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 7 cut(s) 87, 88, 219, 314, 768, 918, 924
PstI CTGCAG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 543
PsyI GACNNNGTC 2 cut(s) 38, 41
RsaI GTAC 2 cut(s) 428, 794
RsaNI GTAC 2 cut(s) 427, 793
RseI CAYNNNNRTG 1 cut(s) 864
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 776
SatI GCNGC 9 cut(s) 157, 189, 214, 247, 395, 398, 483, 595, 634
Sau3AI GATC 3 cut(s) 175, 433, 543
Sau96I GGNCC 7 cut(s) 87, 88, 219, 314, 768, 918, 924
SchI GAGTC 2 cut(s) 5, 470
ScrFI CCNGG 5 cut(s) 210, 252, 577, 663, 922
SduI GDGCHC 4 cut(s) 91, 207, 312, 354
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 547
SinI GGWCC 3 cut(s) 219, 768, 924
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 2 cut(s) 735, 838
SmoI CTYRAG 2 cut(s) 735, 838
Sse9I AATT 6 cut(s) 4, 113, 283, 375, 691, 784
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 208, 250, 575, 661, 920
TaaI ACNGT 2 cut(s) 390, 451
TaiI ACGT 2 cut(s) 42, 138
TaqI TCGA 6 cut(s) 23, 279, 300, 444, 554, 777
TaqII GACCGA 1 cut(s) 941
TasI AATT 6 cut(s) 4, 113, 283, 375, 691, 784
TauI GCSGC 7 cut(s) 159, 191, 216, 397, 400, 597, 636
TfiI GAWTC 3 cut(s) 467, 526, 586
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 2 cut(s) 246, 482
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 1 cut(s) 513
Tth111I GACNNNGTC 2 cut(s) 38, 41
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 219, 768, 924
XapI RAATTY 4 cut(s) 4, 113, 283, 375
XceI RCATGY 2 cut(s) 700, 911
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 53
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.