RchiOBHm_Chr6g0293871

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
56361303 .. 56362585
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26371

Sequence Viewer

Length: 951 bp
ATGAATTCCGACTCCGTGTTCTCGACGCTTCCGGACGACGTCGTCCTGAACTTGTTCTCCAAGCTGGAGGACGACCCTCGCAACTGGGCCCGCCTCGCGTGCGCCTGCACAAAATTCGCCTCCCTCATTCGCAACGTCTGCTGGAAGACCAAGTGCCGCAACCTCCTCCCCTCCGATCTCGTCTCCGCCGCCTCCTCCTCCGAGCCCCCCGGCGGCTGGTCCTCCCTCCACAAGCTGGCAGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTGCTCTTCGAGAATTCCGATTTCGGCCTGGAACGCGAGCTCGGCCCCGACGAAAGTTACCGCCCCCAATCGGAGCCCTCCTCCTCCAGCCAAATTCACCAACCACCGTCGCCGCCGCCGCCGGCTTCCGATTGCGCTTGGTCTCTCTACGACGATCTCTATTTCGATACGGTTTACGACGAGTCCGAATCGGATGCTGTTGCTGCCCCCGAGAACGAGAACGAGAACGGCGTCGTTTCAGTGGGCGGTGAGTTTCCGATTCGAAAAAGGCGAAAGATCTGCAGGTCGATGAGGTCGCATTTGGCTTCCGGGGTCTGGAATCTGAGCCGCGAGCAAGGCAACAAGCTTCTCCACAGCCGGTTTCGCGGCGATTGCCTCTACATCTGTGACTGGCCTGGGTGTGTTCACATTGAAGAGAAGCGGAATTACATGCTTTTCAGAGGGGTTTTCAAGGACTTCAAGGGCTCTCAAGTGTGGAGGAACATCAAGGATGCCAAGAGGACCAAAGTCGACCTCAATTGCGCCTACTGCGCCTGCAAGCAGACTTGGGATTTGCACTCCGCCTTCTGCTTGAGACGCGGTTTCGGCTACCATGACGATGGCGAACCCGTTGTCAGGGCTTATGTGTGCGACAATGGACATGTCTCTGGGGCCTGGACCGACTTGCCATTGTATGCCTAA

Protein Analysis

316

Amino Acids

35.49

Weight (kDa)

6.0

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 53 2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 780
AccII CGCG 5 cut(s) 98, 306, 600, 636, 849
AccIII TCCGGA 1 cut(s) 31
AcsI RAATTY 4 cut(s) 4, 113, 283, 363
AcyI GRCGYC 2 cut(s) 39, 501
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 340, 585, 885
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 3 cut(s) 683, 721, 730
AjnI CCWGG 3 cut(s) 297, 664, 923
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 64, 235, 310, 616
AluI AGCT 4 cut(s) 64, 235, 310, 616
Alw21I GWGCWC 2 cut(s) 276, 312
Alw26I GTCTC 4 cut(s) 187, 417, 838, 919
Ama87I CYCGRG 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 6 cut(s) 87, 253, 295, 313, 662, 921
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 246, 473
ApoI RAATTY 4 cut(s) 4, 113, 283, 363
ArsI GACNNNNNNTTYG 4 cut(s) 805, 837, 867, 899
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 104, 407, 794, 803
AspS9I GGNCC 7 cut(s) 87, 88, 219, 314, 771, 921, 927
AsuC2I CCSGG 3 cut(s) 210, 252, 580
AsuHPI GGTGA 2 cut(s) 359, 530
AsuII TTCGAA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 3 cut(s) 219, 771, 927
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 5 cut(s) 91, 207, 312, 348, 737
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 276, 312
BbvI GCAGC 2 cut(s) 233, 460
BccI CCATC 1 cut(s) 863
BceAI ACGGC 1 cut(s) 514
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 446, 480, 531, 565
BciT130I CCWGG 3 cut(s) 299, 666, 925
BcnI CCSGG 3 cut(s) 210, 252, 580
BcoDI GTCTC 4 cut(s) 187, 417, 838, 919
BfmI CTRYAG 1 cut(s) 550
BfuAI ACCTGC 1 cut(s) 543
BglII AGATCT 1 cut(s) 546
Bme1390I CCNGG 6 cut(s) 210, 252, 299, 580, 666, 925
Bme18I GGWCC 3 cut(s) 219, 771, 927
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 7 cut(s) 87, 88, 219, 314, 771, 921, 927
BmiI GGNNCC 4 cut(s) 89, 316, 345, 922
BmrFI CCNGG 6 cut(s) 210, 252, 299, 580, 666, 925
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 2 cut(s) 454, 751
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 86, 340
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 2 cut(s) 723, 862
BpuMI CCSGG 3 cut(s) 210, 252, 580
BsaHI GRCGYC 2 cut(s) 39, 501
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 4 cut(s) 208, 250, 579, 665
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 235, 340, 585, 885
Bse118I RCCGGY 2 cut(s) 391, 627
Bse1I ACTGG 2 cut(s) 89, 665
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 3 cut(s) 299, 666, 925
BseDI CCNNGG 4 cut(s) 208, 250, 579, 665
BseGI GGATG 2 cut(s) 469, 766
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 340, 585, 885
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 2 cut(s) 89, 665
BseRI GAGGAG 6 cut(s) 155, 184, 187, 248, 340, 343
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 233, 460
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 5 cut(s) 98, 306, 600, 636, 849
BshFI GGCC 6 cut(s) 89, 255, 297, 315, 664, 923
BsiHKAI GWGCWC 2 cut(s) 276, 312
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 7 cut(s) 32, 210, 252, 267, 392, 579, 628
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 340, 585, 885
BsmAI GTCTC 4 cut(s) 187, 417, 838, 919
BsmBI CGTCTC 2 cut(s) 187, 838
BsnI GGCC 6 cut(s) 89, 255, 297, 315, 664, 923
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 479
Bsp119I TTCGAA 1 cut(s) 532
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 6 cut(s) 91, 207, 276, 312, 348, 737
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 175, 424, 546
BspANI GGCC 6 cut(s) 89, 255, 297, 315, 664, 923
BspCNI CTCAG 1 cut(s) 585
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 5 cut(s) 98, 306, 600, 636, 849
BspLI GGNNCC 4 cut(s) 89, 316, 345, 922
BspMAI CTGCAG 1 cut(s) 554
BspMI ACCTGC 1 cut(s) 543
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 417
BsrFI RCCGGY 2 cut(s) 391, 627
BsrI ACTGG 2 cut(s) 89, 665
BssAI RCCGGY 2 cut(s) 391, 627
BssECI CCNNGG 4 cut(s) 208, 250, 579, 665
BssMI GATC 3 cut(s) 175, 424, 546
BssNI GRCGYC 2 cut(s) 39, 501
Bst2UI CCWGG 3 cut(s) 299, 666, 925
Bst4CI ACNGT 2 cut(s) 378, 442
Bst6I CTCTTC 2 cut(s) 281, 678
BstACI GRCGYC 2 cut(s) 39, 501
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 593
BstF5I GGATG 2 cut(s) 469, 766
BstFNI CGCG 5 cut(s) 98, 306, 600, 636, 849
BstHHI GCGC 4 cut(s) 104, 407, 794, 803
BstKTI GATC 3 cut(s) 178, 427, 549
BstMAI GTCTC 4 cut(s) 187, 417, 838, 919
BstMBI GATC 3 cut(s) 175, 424, 546
BstNI CCWGG 3 cut(s) 299, 666, 925
BstNSI RCATGY 2 cut(s) 703, 914
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 6 cut(s) 208, 250, 297, 578, 664, 923
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 5 cut(s) 98, 306, 600, 636, 849
BstV1I GCAGC 2 cut(s) 233, 460
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 869
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 6 cut(s) 89, 255, 297, 315, 664, 923
BtsCI GGATG 2 cut(s) 469, 766
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 1 cut(s) 543
CfoI GCGC 4 cut(s) 104, 407, 794, 803
Cfr10I RCCGGY 2 cut(s) 391, 627
Cfr13I GGNCC 7 cut(s) 87, 88, 219, 314, 771, 921, 927
CseI GACGC 3 cut(s) 34, 490, 855
CviAII CATG 3 cut(s) 700, 863, 911
DdeI CTNAG 1 cut(s) 593
DpnI GATC 3 cut(s) 177, 426, 548
DpnII GATC 3 cut(s) 175, 424, 546
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 281, 678
EarI CTCTTC 2 cut(s) 281, 678
EciI GGCGGA 2 cut(s) 175, 820
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 5 cut(s) 91, 207, 312, 348, 737
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 3 cut(s) 219, 771, 927
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 921
EcoRI GAATTC 2 cut(s) 4, 283
EcoRII CCWGG 3 cut(s) 297, 664, 923
EcoT38I GRGCYC 5 cut(s) 91, 207, 312, 348, 737
Esp3I CGTCTC 2 cut(s) 187, 838
FaeI CATG 3 cut(s) 703, 866, 914
FaiI YATR 5 cut(s) 701, 864, 894, 912, 945
FatI CATG 3 cut(s) 699, 862, 910
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 780
FokI GGATG 2 cut(s) 476, 773
FriOI GRGCYC 5 cut(s) 91, 207, 312, 348, 737
GlaI GCGC 4 cut(s) 103, 406, 793, 802
GsuI CTGGAG 2 cut(s) 86, 340
HaeIII GGCC 6 cut(s) 89, 255, 297, 315, 664, 923
HapII CCGG 7 cut(s) 32, 210, 252, 267, 392, 579, 628
HgaI GACGC 3 cut(s) 34, 490, 855
HhaI GCGC 4 cut(s) 104, 407, 794, 803
Hin1I GRCGYC 2 cut(s) 39, 501
Hin1II CATG 3 cut(s) 703, 866, 914
Hin6I GCGC 4 cut(s) 102, 405, 792, 801
HinP1I GCGC 4 cut(s) 102, 405, 792, 801
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 5 cut(s) 11, 452, 458, 529, 589
HpaII CCGG 7 cut(s) 32, 210, 252, 267, 392, 579, 628
HphI GGTGA 2 cut(s) 359, 530
Hpy166II GTNNAC 3 cut(s) 445, 676, 781
Hpy188III TCNNGA 5 cut(s) 22, 32, 46, 280, 586
Hpy8I GTNNAC 3 cut(s) 445, 676, 781
Hpy99I CGWCG 8 cut(s) 28, 41, 44, 323, 382, 425, 452, 506
HpyAV CCTTC 1 cut(s) 844
HpyCH4III ACNGT 2 cut(s) 378, 442
HpyCH4IV ACGT 2 cut(s) 39, 135
HpyCH4V TGCA 4 cut(s) 108, 552, 807, 826
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 2 cut(s) 39, 135
Hsp92I GRCGYC 2 cut(s) 39, 501
Hsp92II CATG 3 cut(s) 703, 866, 914
HspAI GCGC 4 cut(s) 102, 405, 792, 801
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 175, 424, 546
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 2 cut(s) 233, 460
LweI GCATC 2 cut(s) 454, 751
MaeII ACGT 2 cut(s) 39, 135
MaeIII GTNAC 2 cut(s) 326, 656
MalI GATC 3 cut(s) 177, 426, 548
MboI GATC 3 cut(s) 175, 424, 546
MboII GAAGA 3 cut(s) 157, 268, 695
MfeI CAATTG 1 cut(s) 787
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 6 cut(s) 91, 207, 276, 312, 348, 737
MluCI AATT 6 cut(s) 4, 113, 283, 363, 694, 787
MlyI GAGTC 2 cut(s) 5, 461
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 867
MspI CCGG 7 cut(s) 32, 210, 252, 267, 392, 579, 628
MspR9I CCNGG 6 cut(s) 210, 252, 299, 580, 666, 925
MunI CAATTG 1 cut(s) 787
MvaI CCWGG 3 cut(s) 299, 666, 925
MvnI CGCG 5 cut(s) 98, 306, 600, 636, 849
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 3 cut(s) 210, 252, 580
NdeII GATC 3 cut(s) 175, 424, 546
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 3 cut(s) 703, 866, 914
NlaIV GGNNCC 4 cut(s) 89, 316, 345, 922
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 2 cut(s) 703, 914
NspV TTCGAA 1 cut(s) 532
PciI ACATGT 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 5 cut(s) 285, 318, 453, 498, 538
PdiI GCCGGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 458, 529, 589
PflFI GACNNNGTC 2 cut(s) 38, 41
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 2 cut(s) 5, 460
PpsI GAGTC 2 cut(s) 5, 460
PscI ACATGT 1 cut(s) 910
PshAI GACNNNNGTC 1 cut(s) 776
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 297, 664, 923
PspGI CCWGG 3 cut(s) 297, 664, 923
PspN4I GGNNCC 4 cut(s) 89, 316, 345, 922
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 7 cut(s) 87, 88, 219, 314, 771, 921, 927
PstI CTGCAG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 2 cut(s) 38, 41
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 779
SapI GCTCTTC 1 cut(s) 281
Sau3AI GATC 3 cut(s) 175, 424, 546
Sau96I GGNCC 7 cut(s) 87, 88, 219, 314, 771, 921, 927
SchI GAGTC 2 cut(s) 5, 461
ScrFI CCNGG 6 cut(s) 210, 252, 299, 580, 666, 925
SduI GDGCHC 6 cut(s) 91, 207, 276, 312, 348, 737
SfaNI GCATC 2 cut(s) 454, 751
SfcI CTRYAG 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 3 cut(s) 219, 771, 927
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 738, 841
SmoI CTYRAG 2 cut(s) 738, 841
Sse9I AATT 6 cut(s) 4, 113, 283, 363, 694, 787
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 6 cut(s) 208, 250, 297, 578, 664, 923
TaaI ACNGT 2 cut(s) 378, 442
TaiI ACGT 2 cut(s) 42, 138
TaqI TCGA 6 cut(s) 23, 279, 435, 532, 557, 780
TaqII GACCGA 1 cut(s) 944
TasI AATT 6 cut(s) 4, 113, 283, 363, 694, 787
TauI GCSGC 8 cut(s) 159, 191, 216, 385, 388, 391, 600, 639
TfiI GAWTC 3 cut(s) 458, 529, 589
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 246, 473
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 1 cut(s) 516
Tth111I GACNNNGTC 2 cut(s) 38, 41
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 219, 771, 927
XapI RAATTY 4 cut(s) 4, 113, 283, 363
XceI RCATGY 2 cut(s) 703, 914
XmiI GTMKAC 1 cut(s) 780
XmnI GAANNNNTTC 1 cut(s) 53
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.