MD03G1287400.v1.1

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36650256 .. 36651887
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1287400.v1.1.491

Sequence Viewer

Length: 1023 bp
ATGGCCGGAACCCTGTTCTCGAAGCTCTCCGACGACGTCGTTCTGAACATCCTCTTCAAGCTCGAGGAGGACCCGCGGAACTGGGCTCGGCTCGCCTGCTCCTGCACCAAGTTCTCCTCCATGATCCGCAACGTCTGCTGGAAGACCAAGTGCTACAAGGTCATCCCCTCCGTCGTCTCCGCTCTCCTCACCGGCTCCACCGAGCCTGCCGGCGGCTGGGCCGCCCTTCACAAGCTCGCTGTCTGCTGCCCTGGCCTCCTCCACTCCGGCGTCCTCTTCGAGAACTCCGACTTTGGGCTCGAGCGCGAGCTCGGTCCCGACGAGAATTACCGGAGATTGGACTCCAATCCGGTCGGCGCATCTGCGGCGGCGAATCCTCCGACCGAGGCTTCCTCGAGCCAAATTGGCGCGAATCAGGAGGTGGGATCTTCTGGAAATGATTGTTCTTGGTCTCTGTTCGATGATCTTTATTTCGATACAGTCTATAACGATTCTGAAGCCCATCAAGAGCAAGATAATCCCCAATTAGAATCAGCAGCGGCGGAGGCGGATCAAGTCGCCGTGGAGAATGGCGCCGTTCGAGTGGGCGGCGAATTTTCGATTTGCAAGAAAAGGAAGGTCTGCAGACCGATGAGGTCGCATTTGGCTTCTGGGGTCTGGAATCTGAGCCGTGAGCAGGGCAACAAGCTTCTCCACAGCCGGTTCCGCGGCGATCGCTTGTACATTTGTGATTGGCCCGGCTGCGTGCACATCGAAGAGAAACGAAATTACATGCTTTTCAGAGGGATTTTCAAGGATTTCAAGGGGTCCCAAGTGTGGAGGACGATCAAGGATGGGAACCGCAGCAAGATTGATCTGAACTGCGCGTTTTGCGCCTGCAAAGACACTTGGGATTTGCATTCTGCCTTCTGCTTGAGGCGGGTTTTCGGGTACCATGACGATGGCGAGCCGGTTGTTCGAGCTTATGTCTGTGAAAATGGGCACGTCTCTGGGGCTTGGACTGACCTGCCATTGTACTCTTGA

Protein Analysis

341

Amino Acids

37.83

Weight (kDa)

6.01

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
Acc36I ACCTGC 1 cut(s) 1014
Acc65I GGTACC 1 cut(s) 930
AccB1I GGYRCC 2 cut(s) 572, 930
AccBSI CCGCTC 1 cut(s) 182
AccII CGCG 5 cut(s) 76, 306, 410, 708, 866
AclWI GGATC 3 cut(s) 118, 433, 558
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 3 cut(s) 36, 270, 573
AfaI GTAC 3 cut(s) 722, 932, 1016
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 676, 816
AgsI TTSAA 3 cut(s) 58, 793, 802
AjiI CACGTC 1 cut(s) 985
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 6 cut(s) 25, 61, 235, 310, 688, 962
AluI AGCT 6 cut(s) 25, 61, 235, 310, 688, 962
Alw21I GWGCWC 2 cut(s) 312, 750
Alw26I GTCTC 3 cut(s) 181, 456, 991
Alw44I GTGCAC 1 cut(s) 746
AlwI GGATC 3 cut(s) 118, 433, 558
Ama87I CYCGRG 3 cut(s) 62, 299, 394
AoxI GGCC 4 cut(s) 3, 219, 253, 734
ApaLI GTGCAC 1 cut(s) 746
ApeKI GCWGC 4 cut(s) 246, 536, 741, 843
ApoI RAATTY 1 cut(s) 593
AsiSI GCGATCGC 1 cut(s) 715
Asp718I GGTACC 1 cut(s) 930
AspLEI GCGC 6 cut(s) 306, 359, 410, 575, 866, 875
AspS9I GGNCC 5 cut(s) 70, 219, 314, 735, 807
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 3 cut(s) 62, 299, 394
AvaII GGWCC 3 cut(s) 70, 314, 807
BaeGI GKGCMC 2 cut(s) 750, 984
BanI GGYRCC 2 cut(s) 572, 930
BanII GRGCYC 3 cut(s) 88, 300, 312
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 312, 750
BbvI GCAGC 4 cut(s) 233, 548, 728, 855
BccI CCATC 3 cut(s) 510, 827, 935
BceAI ACGGC 3 cut(s) 545, 560, 654
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 3 cut(s) 181, 456, 991
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 1014
BglI GCCNNNNNGGC 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 252, 738
Bme18I GGWCC 3 cut(s) 70, 314, 807
BmeT110I CYCGRG 3 cut(s) 62, 299, 394
BmgBI CACGTC 1 cut(s) 985
BmgT120I GGNCC 5 cut(s) 70, 219, 314, 735, 807
BmrFI CCNGG 2 cut(s) 252, 738
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpuEI CTTGAG 1 cut(s) 934
BpuMI CCSGG 1 cut(s) 738
BsaHI GRCGYC 3 cut(s) 36, 270, 573
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 5 cut(s) 74, 250, 384, 561, 706
BsaWI WCCGGW 2 cut(s) 330, 349
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 676, 816
Bse118I RCCGGY 4 cut(s) 191, 209, 699, 949
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 5 cut(s) 74, 250, 384, 561, 706
BseGI GGATG 3 cut(s) 48, 162, 838
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 676, 816
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 4 cut(s) 80, 106, 176, 248
BseSI GKGCMC 2 cut(s) 750, 984
BseXI GCAGC 4 cut(s) 233, 548, 728, 855
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 5 cut(s) 76, 306, 410, 708, 866
Bsh1285I CGRYCG 3 cut(s) 354, 384, 715
BshFI GGCC 4 cut(s) 5, 221, 255, 736
BshNI GGYRCC 2 cut(s) 572, 930
BsiEI CGRYCG 3 cut(s) 354, 384, 715
BsiHKAI GWGCWC 2 cut(s) 312, 750
BsiHKCI CYCGRG 3 cut(s) 62, 299, 394
BsiSI CCGG 9 cut(s) 6, 192, 210, 267, 331, 350, 700, 738, 950
BslFI GGGAC 2 cut(s) 300, 793
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 676, 816
BsmAI GTCTC 3 cut(s) 181, 456, 991
BsmBI CGTCTC 2 cut(s) 181, 991
BsmFI GGGAC 2 cut(s) 300, 793
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 4 cut(s) 5, 221, 255, 736
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 3 cut(s) 62, 299, 394
Bsp1286I GDGCHC 5 cut(s) 88, 300, 312, 750, 984
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
BspANI GGCC 4 cut(s) 5, 221, 255, 736
BspCNI CTCAG 1 cut(s) 657
BspFNI CGCG 5 cut(s) 76, 306, 410, 708, 866
BspMAI CTGCAG 1 cut(s) 626
BspMI ACCTGC 1 cut(s) 1014
BspPI GGATC 3 cut(s) 118, 433, 558
BspT107I GGYRCC 2 cut(s) 572, 930
BspTNI GGTCTC 1 cut(s) 456
BsrBI CCGCTC 1 cut(s) 182
BsrFI RCCGGY 4 cut(s) 191, 209, 699, 949
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 4 cut(s) 191, 209, 699, 949
BssECI CCNNGG 5 cut(s) 74, 250, 384, 561, 706
BssMI GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
BssNI GRCGYC 3 cut(s) 36, 270, 573
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 3 cut(s) 59, 281, 750
BstACI GRCGYC 3 cut(s) 36, 270, 573
BstAPI GCANNNNNTGC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 9 cut(s) 93, 97, 207, 211, 237, 308, 746, 877, 947
BstDEI CTNAG 1 cut(s) 665
BstDSI CCRYGG 3 cut(s) 74, 561, 706
BstF5I GGATG 3 cut(s) 48, 162, 838
BstFNI CGCG 5 cut(s) 76, 306, 410, 708, 866
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 6 cut(s) 306, 359, 410, 575, 866, 875
BstKTI GATC 7 cut(s) 126, 428, 466, 553, 715, 828, 856
BstMAI GTCTC 3 cut(s) 181, 456, 991
BstMBI GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
BstMCI CGRYCG 3 cut(s) 354, 384, 715
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 250, 736
BstSFI CTRYAG 1 cut(s) 622
BstSLI GKGCMC 2 cut(s) 750, 984
BstUI CGCG 5 cut(s) 76, 306, 410, 708, 866
BstV1I GCAGC 4 cut(s) 233, 548, 728, 855
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 4 cut(s) 5, 221, 255, 736
BtgI CCRYGG 3 cut(s) 74, 561, 706
BtrI CACGTC 1 cut(s) 985
BtsCI GGATG 3 cut(s) 48, 162, 838
BveI ACCTGC 1 cut(s) 1014
Cac8I GCNNGC 9 cut(s) 93, 97, 207, 211, 237, 308, 746, 877, 947
CfoI GCGC 6 cut(s) 306, 359, 410, 575, 866, 875
Cfr10I RCCGGY 4 cut(s) 191, 209, 699, 949
Cfr13I GGNCC 5 cut(s) 70, 219, 314, 735, 807
Cfr42I CCGCGG 2 cut(s) 77, 709
CseI GACGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 721, 931, 1015
CviAII CATG 3 cut(s) 121, 772, 935
CviQI GTAC 3 cut(s) 721, 931, 1015
DdeI CTNAG 1 cut(s) 665
DinI GGCGCC 1 cut(s) 574
DpnI GATC 7 cut(s) 125, 427, 465, 552, 714, 827, 855
DpnII GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 59, 281, 750
EarI CTCTTC 3 cut(s) 59, 281, 750
EciI GGCGGA 2 cut(s) 557, 563
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 3 cut(s) 88, 300, 312
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 70, 314, 807
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 3 cut(s) 62, 299, 394
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 70, 807
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 3 cut(s) 88, 300, 312
EgeI GGCGCC 1 cut(s) 574
EheI GGCGCC 1 cut(s) 574
Esp3I CGTCTC 2 cut(s) 181, 991
FaeI CATG 3 cut(s) 124, 775, 938
FaiI YATR 5 cut(s) 122, 486, 773, 936, 966
FaqI GGGAC 2 cut(s) 300, 793
FatI CATG 3 cut(s) 120, 771, 934
FauI CCCGC 2 cut(s) 81, 912
FokI GGATG 3 cut(s) 35, 149, 845
FriOI GRGCYC 3 cut(s) 88, 300, 312
GlaI GCGC 6 cut(s) 305, 358, 409, 574, 865, 874
GsaI CCCAGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 4 cut(s) 5, 221, 255, 736
HapII CCGG 9 cut(s) 6, 192, 210, 267, 331, 350, 700, 738, 950
HgaI GACGC 1 cut(s) 259
HhaI GCGC 6 cut(s) 306, 359, 410, 575, 866, 875
Hin1I GRCGYC 3 cut(s) 36, 270, 573
Hin1II CATG 3 cut(s) 124, 775, 938
Hin6I GCGC 6 cut(s) 304, 357, 408, 573, 864, 873
HinP1I GCGC 6 cut(s) 304, 357, 408, 573, 864, 873
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 6 cut(s) 341, 373, 412, 491, 530, 661
HpaII CCGG 9 cut(s) 6, 192, 210, 267, 331, 350, 700, 738, 950
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 8 cut(s) 31, 45, 289, 381, 496, 666, 782, 858
Hpy188III TCNNGA 8 cut(s) 19, 280, 317, 416, 432, 506, 658, 1020
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 5 cut(s) 35, 38, 41, 176, 323
HpyAV CCTTC 3 cut(s) 236, 610, 916
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 3 cut(s) 36, 132, 984
HpyCH4V TGCA 6 cut(s) 105, 606, 624, 748, 879, 898
HpyF3I CTNAG 1 cut(s) 665
HpySE526I ACGT 3 cut(s) 36, 132, 984
Hsp92I GRCGYC 3 cut(s) 36, 270, 573
Hsp92II CATG 3 cut(s) 124, 775, 938
HspAI GCGC 6 cut(s) 304, 357, 408, 573, 864, 873
KasI GGCGCC 1 cut(s) 572
KflI GGGWCCC 1 cut(s) 807
KpnI GGTACC 1 cut(s) 934
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
KspI CCGCGG 2 cut(s) 77, 709
Kzo9I GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
LmnI GCTCC 2 cut(s) 104, 200
Lsp1109I GCAGC 4 cut(s) 233, 548, 728, 855
LweI GCATC 1 cut(s) 368
MaeII ACGT 3 cut(s) 36, 132, 984
MalI GATC 7 cut(s) 125, 427, 465, 552, 714, 827, 855
MbiI CCGCTC 1 cut(s) 182
MboI GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
MboII GAAGA 5 cut(s) 46, 154, 268, 420, 767
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 5 cut(s) 88, 300, 312, 750, 984
MluCI AATT 5 cut(s) 325, 402, 524, 593, 766
Mly113I GGCGCC 1 cut(s) 573
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 3 cut(s) 54, 312, 404
MroNI GCCGGC 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 3 cut(s) 76, 539, 708
MspI CCGG 9 cut(s) 6, 192, 210, 267, 331, 350, 700, 738, 950
MspR9I CCNGG 2 cut(s) 252, 738
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 5 cut(s) 76, 306, 410, 708, 866
NaeI GCCGGC 1 cut(s) 211
NarI GGCGCC 1 cut(s) 573
NciI CCSGG 1 cut(s) 738
NdeII GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 124, 775, 938
NmeAIII GCCGAG 1 cut(s) 67
NspI RCATGY 1 cut(s) 775
PaeR7I CTCGAG 3 cut(s) 62, 299, 394
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 318
PctI GAATGC 1 cut(s) 898
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 5 cut(s) 373, 412, 491, 530, 661
PflFI GACNNNGTC 1 cut(s) 35
Ple19I CGATCG 1 cut(s) 715
PleI GAGTC 1 cut(s) 335
PluTI GGCGCC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 2 cut(s) 70, 807
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 2 cut(s) 70, 807
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 250
PspPI GGNCC 5 cut(s) 70, 219, 314, 735, 807
PspPPI RGGWCCY 2 cut(s) 70, 807
PspXI VCTCGAGB 3 cut(s) 62, 299, 394
PstI CTGCAG 1 cut(s) 626
PsuI RGATCY 1 cut(s) 425
PsyI GACNNNGTC 1 cut(s) 35
PvuI CGATCG 1 cut(s) 715
RgaI GCGATCGC 1 cut(s) 715
RsaI GTAC 3 cut(s) 722, 932, 1016
RsaNI GTAC 3 cut(s) 721, 931, 1015
RseI CAYNNNNRTG 1 cut(s) 939
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 2 cut(s) 77, 709
Sau3AI GATC 7 cut(s) 123, 425, 463, 550, 712, 825, 853
Sau96I GGNCC 5 cut(s) 70, 219, 314, 735, 807
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 252, 738
SduI GDGCHC 5 cut(s) 88, 300, 312, 750, 984
SfaAI GCGATCGC 1 cut(s) 715
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 622
SfoI GGCGCC 1 cut(s) 574
Sfr274I CTCGAG 3 cut(s) 62, 299, 394
Sfr303I CCGCGG 2 cut(s) 77, 709
SgfI GCGATCGC 1 cut(s) 715
SgrBI CCGCGG 2 cut(s) 77, 709
SinI GGWCC 3 cut(s) 70, 314, 807
SlaI CTCGAG 3 cut(s) 62, 299, 394
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 4 cut(s) 62, 299, 394, 913
SmoI CTYRAG 4 cut(s) 62, 299, 394, 913
Sse9I AATT 5 cut(s) 325, 402, 524, 593, 766
SspDI GGCGCC 1 cut(s) 572
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 250, 736
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 3 cut(s) 39, 135, 987
TaqII GACCGA 3 cut(s) 302, 398, 643
TasI AATT 5 cut(s) 325, 402, 524, 593, 766
TatI WGTACW 2 cut(s) 720, 1014
TauI GCSGC 7 cut(s) 216, 224, 368, 371, 542, 591, 711
TfiI GAWTC 5 cut(s) 373, 412, 491, 530, 661
TseI GCWGC 4 cut(s) 246, 536, 741, 843
TspGWI ACGGA 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 35
VneI GTGCAC 1 cut(s) 746
VpaK11BI GGWCC 3 cut(s) 70, 314, 807
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 775
XhoI CTCGAG 3 cut(s) 62, 299, 394
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.