Phytochrome A-associated F-box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02440 |
| fragaria_vesca | FvH4_2g25611 |
| malus_domestica | MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1 |
| prunus_persica | Prupe.8G260500_v2.0.a1 |
| pyrus_communis | pycom03g22750 pycom11g27150 pycom11g27180 |
| rosa_chinensis | RchiOBHm_Chr6g0293871 |
| rosa_laevigata | RLG00000011916 |
| rosa_multiflora | Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00261840 |
| rosa_samantha | Rh6AG352100 Rh6BG358900 Rh6CG366300 |
| rosa_wichuraiana | Rw6G030640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 39 |
| Acc36I | ACCTGC | 1 cut(s) | 1014 |
| Acc65I | GGTACC | 1 cut(s) | 930 |
| AccB1I | GGYRCC | 2 cut(s) | 572, 930 |
| AccBSI | CCGCTC | 1 cut(s) | 182 |
| AccII | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| AclWI | GGATC | 3 cut(s) | 118, 433, 558 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 593 |
| AcuI | CTGAAG | 1 cut(s) | 516 |
| AcyI | GRCGYC | 3 cut(s) | 36, 270, 573 |
| AfaI | GTAC | 3 cut(s) | 722, 932, 1016 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 212, 216, 294, 337, 676, 816 |
| AgsI | TTSAA | 3 cut(s) | 58, 793, 802 |
| AjiI | CACGTC | 1 cut(s) | 985 |
| AjnI | CCWGG | 1 cut(s) | 250 |
| AluBI | AGCT | 6 cut(s) | 25, 61, 235, 310, 688, 962 |
| AluI | AGCT | 6 cut(s) | 25, 61, 235, 310, 688, 962 |
| Alw21I | GWGCWC | 2 cut(s) | 312, 750 |
| Alw26I | GTCTC | 3 cut(s) | 181, 456, 991 |
| Alw44I | GTGCAC | 1 cut(s) | 746 |
| AlwI | GGATC | 3 cut(s) | 118, 433, 558 |
| Ama87I | CYCGRG | 3 cut(s) | 62, 299, 394 |
| AoxI | GGCC | 4 cut(s) | 3, 219, 253, 734 |
| ApaLI | GTGCAC | 1 cut(s) | 746 |
| ApeKI | GCWGC | 4 cut(s) | 246, 536, 741, 843 |
| ApoI | RAATTY | 1 cut(s) | 593 |
| AsiSI | GCGATCGC | 1 cut(s) | 715 |
| Asp718I | GGTACC | 1 cut(s) | 930 |
| AspLEI | GCGC | 6 cut(s) | 306, 359, 410, 575, 866, 875 |
| AspS9I | GGNCC | 5 cut(s) | 70, 219, 314, 735, 807 |
| AsuC2I | CCSGG | 1 cut(s) | 738 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AvaI | CYCGRG | 3 cut(s) | 62, 299, 394 |
| AvaII | GGWCC | 3 cut(s) | 70, 314, 807 |
| BaeGI | GKGCMC | 2 cut(s) | 750, 984 |
| BanI | GGYRCC | 2 cut(s) | 572, 930 |
| BanII | GRGCYC | 3 cut(s) | 88, 300, 312 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| Bbv12I | GWGCWC | 2 cut(s) | 312, 750 |
| BbvI | GCAGC | 4 cut(s) | 233, 548, 728, 855 |
| BccI | CCATC | 3 cut(s) | 510, 827, 935 |
| BceAI | ACGGC | 3 cut(s) | 545, 560, 654 |
| BciT130I | CCWGG | 1 cut(s) | 252 |
| BcnI | CCSGG | 1 cut(s) | 738 |
| BcoDI | GTCTC | 3 cut(s) | 181, 456, 991 |
| BfmI | CTRYAG | 1 cut(s) | 622 |
| BfoI | RGCGCY | 1 cut(s) | 576 |
| BfuAI | ACCTGC | 1 cut(s) | 1014 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 405 |
| Bme1390I | CCNGG | 2 cut(s) | 252, 738 |
| Bme18I | GGWCC | 3 cut(s) | 70, 314, 807 |
| BmeT110I | CYCGRG | 3 cut(s) | 62, 299, 394 |
| BmgBI | CACGTC | 1 cut(s) | 985 |
| BmgT120I | GGNCC | 5 cut(s) | 70, 219, 314, 735, 807 |
| BmrFI | CCNGG | 2 cut(s) | 252, 738 |
| BmrI | ACTGGG | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 368 |
| BmuI | ACTGGG | 1 cut(s) | 91 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 377, 409 |
| BpuEI | CTTGAG | 1 cut(s) | 934 |
| BpuMI | CCSGG | 1 cut(s) | 738 |
| BsaHI | GRCGYC | 3 cut(s) | 36, 270, 573 |
| BsaI | GGTCTC | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 5 cut(s) | 74, 250, 384, 561, 706 |
| BsaWI | WCCGGW | 2 cut(s) | 330, 349 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 212, 216, 294, 337, 676, 816 |
| Bse118I | RCCGGY | 4 cut(s) | 191, 209, 699, 949 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| BseBI | CCWGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 5 cut(s) | 74, 250, 384, 561, 706 |
| BseGI | GGATG | 3 cut(s) | 48, 162, 838 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 212, 216, 294, 337, 676, 816 |
| BseMII | CTCAG | 1 cut(s) | 656 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BseRI | GAGGAG | 4 cut(s) | 80, 106, 176, 248 |
| BseSI | GKGCMC | 2 cut(s) | 750, 984 |
| BseXI | GCAGC | 4 cut(s) | 233, 548, 728, 855 |
| BseYI | CCCAGC | 1 cut(s) | 216 |
| BsgI | GTGCAG | 1 cut(s) | 88 |
| Bsh1236I | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| Bsh1285I | CGRYCG | 3 cut(s) | 354, 384, 715 |
| BshFI | GGCC | 4 cut(s) | 5, 221, 255, 736 |
| BshNI | GGYRCC | 2 cut(s) | 572, 930 |
| BsiEI | CGRYCG | 3 cut(s) | 354, 384, 715 |
| BsiHKAI | GWGCWC | 2 cut(s) | 312, 750 |
| BsiHKCI | CYCGRG | 3 cut(s) | 62, 299, 394 |
| BsiSI | CCGG | 9 cut(s) | 6, 192, 210, 267, 331, 350, 700, 738, 950 |
| BslFI | GGGAC | 2 cut(s) | 300, 793 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 212, 216, 294, 337, 676, 816 |
| BsmAI | GTCTC | 3 cut(s) | 181, 456, 991 |
| BsmBI | CGTCTC | 2 cut(s) | 181, 991 |
| BsmFI | GGGAC | 2 cut(s) | 300, 793 |
| BsmI | GAATGC | 1 cut(s) | 898 |
| BsnI | GGCC | 4 cut(s) | 5, 221, 255, 736 |
| Bso31I | GGTCTC | 1 cut(s) | 456 |
| BsoBI | CYCGRG | 3 cut(s) | 62, 299, 394 |
| Bsp1286I | GDGCHC | 5 cut(s) | 88, 300, 312, 750, 984 |
| Bsp1407I | TGTACA | 1 cut(s) | 720 |
| Bsp143I | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| BspANI | GGCC | 4 cut(s) | 5, 221, 255, 736 |
| BspCNI | CTCAG | 1 cut(s) | 657 |
| BspFNI | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| BspMAI | CTGCAG | 1 cut(s) | 626 |
| BspMI | ACCTGC | 1 cut(s) | 1014 |
| BspPI | GGATC | 3 cut(s) | 118, 433, 558 |
| BspT107I | GGYRCC | 2 cut(s) | 572, 930 |
| BspTNI | GGTCTC | 1 cut(s) | 456 |
| BsrBI | CCGCTC | 1 cut(s) | 182 |
| BsrFI | RCCGGY | 4 cut(s) | 191, 209, 699, 949 |
| BsrGI | TGTACA | 1 cut(s) | 720 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| BssAI | RCCGGY | 4 cut(s) | 191, 209, 699, 949 |
| BssECI | CCNNGG | 5 cut(s) | 74, 250, 384, 561, 706 |
| BssMI | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| BssNI | GRCGYC | 3 cut(s) | 36, 270, 573 |
| Bst2UI | CCWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 1 cut(s) | 481 |
| Bst6I | CTCTTC | 3 cut(s) | 59, 281, 750 |
| BstACI | GRCGYC | 3 cut(s) | 36, 270, 573 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 135 |
| BstAUI | TGTACA | 1 cut(s) | 720 |
| BstC8I | GCNNGC | 9 cut(s) | 93, 97, 207, 211, 237, 308, 746, 877, 947 |
| BstDEI | CTNAG | 1 cut(s) | 665 |
| BstDSI | CCRYGG | 3 cut(s) | 74, 561, 706 |
| BstF5I | GGATG | 3 cut(s) | 48, 162, 838 |
| BstFNI | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| BstH2I | RGCGCY | 1 cut(s) | 576 |
| BstHHI | GCGC | 6 cut(s) | 306, 359, 410, 575, 866, 875 |
| BstKTI | GATC | 7 cut(s) | 126, 428, 466, 553, 715, 828, 856 |
| BstMAI | GTCTC | 3 cut(s) | 181, 456, 991 |
| BstMBI | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| BstMCI | CGRYCG | 3 cut(s) | 354, 384, 715 |
| BstNI | CCWGG | 1 cut(s) | 252 |
| BstNSI | RCATGY | 1 cut(s) | 775 |
| BstSCI | CCNGG | 2 cut(s) | 250, 736 |
| BstSFI | CTRYAG | 1 cut(s) | 622 |
| BstSLI | GKGCMC | 2 cut(s) | 750, 984 |
| BstUI | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| BstV1I | GCAGC | 4 cut(s) | 233, 548, 728, 855 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 1 cut(s) | 425 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 941 |
| BstYI | RGATCY | 1 cut(s) | 425 |
| BsuRI | GGCC | 4 cut(s) | 5, 221, 255, 736 |
| BtgI | CCRYGG | 3 cut(s) | 74, 561, 706 |
| BtrI | CACGTC | 1 cut(s) | 985 |
| BtsCI | GGATG | 3 cut(s) | 48, 162, 838 |
| BveI | ACCTGC | 1 cut(s) | 1014 |
| Cac8I | GCNNGC | 9 cut(s) | 93, 97, 207, 211, 237, 308, 746, 877, 947 |
| CfoI | GCGC | 6 cut(s) | 306, 359, 410, 575, 866, 875 |
| Cfr10I | RCCGGY | 4 cut(s) | 191, 209, 699, 949 |
| Cfr13I | GGNCC | 5 cut(s) | 70, 219, 314, 735, 807 |
| Cfr42I | CCGCGG | 2 cut(s) | 77, 709 |
| CseI | GACGC | 1 cut(s) | 259 |
| Csp6I | GTAC | 3 cut(s) | 721, 931, 1015 |
| CviAII | CATG | 3 cut(s) | 121, 772, 935 |
| CviQI | GTAC | 3 cut(s) | 721, 931, 1015 |
| DdeI | CTNAG | 1 cut(s) | 665 |
| DinI | GGCGCC | 1 cut(s) | 574 |
| DpnI | GATC | 7 cut(s) | 125, 427, 465, 552, 714, 827, 855 |
| DpnII | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 59, 281, 750 |
| EarI | CTCTTC | 3 cut(s) | 59, 281, 750 |
| EciI | GGCGGA | 2 cut(s) | 557, 563 |
| Ecl136II | GAGCTC | 1 cut(s) | 310 |
| Eco24I | GRGCYC | 3 cut(s) | 88, 300, 312 |
| Eco31I | GGTCTC | 1 cut(s) | 456 |
| Eco47I | GGWCC | 3 cut(s) | 70, 314, 807 |
| Eco53kI | GAGCTC | 1 cut(s) | 310 |
| Eco57I | CTGAAG | 1 cut(s) | 516 |
| Eco88I | CYCGRG | 3 cut(s) | 62, 299, 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 310 |
| EcoO109I | RGGNCCY | 2 cut(s) | 70, 807 |
| EcoRII | CCWGG | 1 cut(s) | 250 |
| EcoT38I | GRGCYC | 3 cut(s) | 88, 300, 312 |
| EgeI | GGCGCC | 1 cut(s) | 574 |
| EheI | GGCGCC | 1 cut(s) | 574 |
| Esp3I | CGTCTC | 2 cut(s) | 181, 991 |
| FaeI | CATG | 3 cut(s) | 124, 775, 938 |
| FaiI | YATR | 5 cut(s) | 122, 486, 773, 936, 966 |
| FaqI | GGGAC | 2 cut(s) | 300, 793 |
| FatI | CATG | 3 cut(s) | 120, 771, 934 |
| FauI | CCCGC | 2 cut(s) | 81, 912 |
| FokI | GGATG | 3 cut(s) | 35, 149, 845 |
| FriOI | GRGCYC | 3 cut(s) | 88, 300, 312 |
| GlaI | GCGC | 6 cut(s) | 305, 358, 409, 574, 865, 874 |
| GsaI | CCCAGC | 1 cut(s) | 220 |
| HaeII | RGCGCY | 1 cut(s) | 576 |
| HaeIII | GGCC | 4 cut(s) | 5, 221, 255, 736 |
| HapII | CCGG | 9 cut(s) | 6, 192, 210, 267, 331, 350, 700, 738, 950 |
| HgaI | GACGC | 1 cut(s) | 259 |
| HhaI | GCGC | 6 cut(s) | 306, 359, 410, 575, 866, 875 |
| Hin1I | GRCGYC | 3 cut(s) | 36, 270, 573 |
| Hin1II | CATG | 3 cut(s) | 124, 775, 938 |
| Hin6I | GCGC | 6 cut(s) | 304, 357, 408, 573, 864, 873 |
| HinP1I | GCGC | 6 cut(s) | 304, 357, 408, 573, 864, 873 |
| HindIII | AAGCTT | 1 cut(s) | 686 |
| HinfI | GANTC | 6 cut(s) | 341, 373, 412, 491, 530, 661 |
| HpaII | CCGG | 9 cut(s) | 6, 192, 210, 267, 331, 350, 700, 738, 950 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 1 cut(s) | 748 |
| Hpy188I | TCNGA | 8 cut(s) | 31, 45, 289, 381, 496, 666, 782, 858 |
| Hpy188III | TCNNGA | 8 cut(s) | 19, 280, 317, 416, 432, 506, 658, 1020 |
| Hpy8I | GTNNAC | 1 cut(s) | 748 |
| Hpy99I | CGWCG | 5 cut(s) | 35, 38, 41, 176, 323 |
| HpyAV | CCTTC | 3 cut(s) | 236, 610, 916 |
| HpyCH4III | ACNGT | 1 cut(s) | 481 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 132, 984 |
| HpyCH4V | TGCA | 6 cut(s) | 105, 606, 624, 748, 879, 898 |
| HpyF3I | CTNAG | 1 cut(s) | 665 |
| HpySE526I | ACGT | 3 cut(s) | 36, 132, 984 |
| Hsp92I | GRCGYC | 3 cut(s) | 36, 270, 573 |
| Hsp92II | CATG | 3 cut(s) | 124, 775, 938 |
| HspAI | GCGC | 6 cut(s) | 304, 357, 408, 573, 864, 873 |
| KasI | GGCGCC | 1 cut(s) | 572 |
| KflI | GGGWCCC | 1 cut(s) | 807 |
| KpnI | GGTACC | 1 cut(s) | 934 |
| KroI | GCCGGC | 1 cut(s) | 209 |
| KroNI | GCCGGC | 1 cut(s) | 211 |
| KspI | CCGCGG | 2 cut(s) | 77, 709 |
| Kzo9I | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| LmnI | GCTCC | 2 cut(s) | 104, 200 |
| Lsp1109I | GCAGC | 4 cut(s) | 233, 548, 728, 855 |
| LweI | GCATC | 1 cut(s) | 368 |
| MaeII | ACGT | 3 cut(s) | 36, 132, 984 |
| MalI | GATC | 7 cut(s) | 125, 427, 465, 552, 714, 827, 855 |
| MbiI | CCGCTC | 1 cut(s) | 182 |
| MboI | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| MboII | GAAGA | 5 cut(s) | 46, 154, 268, 420, 767 |
| MflI | RGATCY | 1 cut(s) | 425 |
| MhlI | GDGCHC | 5 cut(s) | 88, 300, 312, 750, 984 |
| MluCI | AATT | 5 cut(s) | 325, 402, 524, 593, 766 |
| Mly113I | GGCGCC | 1 cut(s) | 573 |
| MlyI | GAGTC | 1 cut(s) | 335 |
| MmeI | TCCRAC | 3 cut(s) | 54, 312, 404 |
| MroNI | GCCGGC | 1 cut(s) | 209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 939 |
| MspA1I | CMGCKG | 3 cut(s) | 76, 539, 708 |
| MspI | CCGG | 9 cut(s) | 6, 192, 210, 267, 331, 350, 700, 738, 950 |
| MspR9I | CCNGG | 2 cut(s) | 252, 738 |
| Mva1269I | GAATGC | 1 cut(s) | 898 |
| MvaI | CCWGG | 1 cut(s) | 252 |
| MvnI | CGCG | 5 cut(s) | 76, 306, 410, 708, 866 |
| NaeI | GCCGGC | 1 cut(s) | 211 |
| NarI | GGCGCC | 1 cut(s) | 573 |
| NciI | CCSGG | 1 cut(s) | 738 |
| NdeII | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| NgoMIV | GCCGGC | 1 cut(s) | 209 |
| NlaIII | CATG | 3 cut(s) | 124, 775, 938 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NspI | RCATGY | 1 cut(s) | 775 |
| PaeR7I | CTCGAG | 3 cut(s) | 62, 299, 394 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 285, 318 |
| PctI | GAATGC | 1 cut(s) | 898 |
| PdiI | GCCGGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 5 cut(s) | 373, 412, 491, 530, 661 |
| PflFI | GACNNNGTC | 1 cut(s) | 35 |
| Ple19I | CGATCG | 1 cut(s) | 715 |
| PleI | GAGTC | 1 cut(s) | 335 |
| PluTI | GGCGCC | 1 cut(s) | 576 |
| PpsI | GAGTC | 1 cut(s) | 335 |
| PpuMI | RGGWCCY | 2 cut(s) | 70, 807 |
| Psp124BI | GAGCTC | 1 cut(s) | 312 |
| Psp5II | RGGWCCY | 2 cut(s) | 70, 807 |
| Psp6I | CCWGG | 1 cut(s) | 250 |
| PspFI | CCCAGC | 1 cut(s) | 216 |
| PspGI | CCWGG | 1 cut(s) | 250 |
| PspPI | GGNCC | 5 cut(s) | 70, 219, 314, 735, 807 |
| PspPPI | RGGWCCY | 2 cut(s) | 70, 807 |
| PspXI | VCTCGAGB | 3 cut(s) | 62, 299, 394 |
| PstI | CTGCAG | 1 cut(s) | 626 |
| PsuI | RGATCY | 1 cut(s) | 425 |
| PsyI | GACNNNGTC | 1 cut(s) | 35 |
| PvuI | CGATCG | 1 cut(s) | 715 |
| RgaI | GCGATCGC | 1 cut(s) | 715 |
| RsaI | GTAC | 3 cut(s) | 722, 932, 1016 |
| RsaNI | GTAC | 3 cut(s) | 721, 931, 1015 |
| RseI | CAYNNNNRTG | 1 cut(s) | 939 |
| SacI | GAGCTC | 1 cut(s) | 312 |
| SacII | CCGCGG | 2 cut(s) | 77, 709 |
| Sau3AI | GATC | 7 cut(s) | 123, 425, 463, 550, 712, 825, 853 |
| Sau96I | GGNCC | 5 cut(s) | 70, 219, 314, 735, 807 |
| SchI | GAGTC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 2 cut(s) | 252, 738 |
| SduI | GDGCHC | 5 cut(s) | 88, 300, 312, 750, 984 |
| SfaAI | GCGATCGC | 1 cut(s) | 715 |
| SfaNI | GCATC | 1 cut(s) | 368 |
| SfcI | CTRYAG | 1 cut(s) | 622 |
| SfoI | GGCGCC | 1 cut(s) | 574 |
| Sfr274I | CTCGAG | 3 cut(s) | 62, 299, 394 |
| Sfr303I | CCGCGG | 2 cut(s) | 77, 709 |
| SgfI | GCGATCGC | 1 cut(s) | 715 |
| SgrBI | CCGCGG | 2 cut(s) | 77, 709 |
| SinI | GGWCC | 3 cut(s) | 70, 314, 807 |
| SlaI | CTCGAG | 3 cut(s) | 62, 299, 394 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 939 |
| SmlI | CTYRAG | 4 cut(s) | 62, 299, 394, 913 |
| SmoI | CTYRAG | 4 cut(s) | 62, 299, 394, 913 |
| Sse9I | AATT | 5 cut(s) | 325, 402, 524, 593, 766 |
| SspDI | GGCGCC | 1 cut(s) | 572 |
| SstI | GAGCTC | 1 cut(s) | 312 |
| StyD4I | CCNGG | 2 cut(s) | 250, 736 |
| TaaI | ACNGT | 1 cut(s) | 481 |
| TaiI | ACGT | 3 cut(s) | 39, 135, 987 |
| TaqII | GACCGA | 3 cut(s) | 302, 398, 643 |
| TasI | AATT | 5 cut(s) | 325, 402, 524, 593, 766 |
| TatI | WGTACW | 2 cut(s) | 720, 1014 |
| TauI | GCSGC | 7 cut(s) | 216, 224, 368, 371, 542, 591, 711 |
| TfiI | GAWTC | 5 cut(s) | 373, 412, 491, 530, 661 |
| TseI | GCWGC | 4 cut(s) | 246, 536, 741, 843 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| Tth111I | GACNNNGTC | 1 cut(s) | 35 |
| VneI | GTGCAC | 1 cut(s) | 746 |
| VpaK11BI | GGWCC | 3 cut(s) | 70, 314, 807 |
| XapI | RAATTY | 1 cut(s) | 593 |
| XceI | RCATGY | 1 cut(s) | 775 |
| XhoI | CTCGAG | 3 cut(s) | 62, 299, 394 |
| ZraI | GACGTC | 1 cut(s) | 37 |