FvH4_2g25611

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
20723427 .. 20724332
906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25611.t1

Sequence Viewer

Length: 906 bp
ATGTTCTCGACGCTCCCGGACGACGTCGTTCTGAACGTGTTCTACAAGCTGGACGACGACCCTCGCCACTGGGCCCGCCTCGCCTGCGCCTGCACCAAATTCTCCTCCCTCATTCGCAACGTCTGCTGGAAGACCAAGTGCCGCGCCGTCCTCCCCTCCCTCGTCTCCGCCGACGATCCCCCCGCCGGCTTTTCCTCCCTCCACAAGCTCGCCGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTCCTCTTCGACCACTCCGATTTCGGCCTCGAACGCGAGCTCGGCCCCGACCACCAGTCCTCCTCCTCCTCCTCTTCCACCCAAATCATCCACCACCAACCGCCGCCGCCTCCTCCGCCGCCAGATTGCGCTTGGTCTCTCTATGACGATCTGTATTTCGACACGGTTTACGACGCCTCCGAGGCCGCCGTAGCCTCTGAACCCCAAAGCGGCGGCGTGGTGGTCTCCGGTGAGTTCCCGGTCGGGAAAAGGCGGAAGATCTGCAGATCGATGAGGTCACATCTGGCCTCCGGGGTCTGGAATCTGAACCGGGAGCAAGGCAACAAGCTTCTCCACAGCCGCTTCCGCGGCGACTCCCTGTACATCTCCGACTGGCCCGGCTGCGTCCACGTGGAAGAGAAGCGCAACTATATGCTGTTCAGAGGGGTGTTCAAGGACTTCAAGGGGTCTCAGGTTTGGCGGAACATCAAGGACGGCAGGAGGAGCAGAGTCGAGCTCTGTTGCGCTTATTGCAGCTGCGACCACACTTGGGATCTCCATTCCGCCTTCTGTTTGCGACGCGGCTTCGGCTACCATGATGATGGCGAGCCCGTCGTCAGGGCTTATGTGTGCGACAATGGTCATGTTTCCGGGGCCTGGACCGACCTGCCTTTGTACGCTTAA

Protein Analysis

302

Amino Acids

33.76

Weight (kDa)

6.69

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 897
AccII CGCG 4 cut(s) 144, 279, 591, 804
AclWI GGATC 2 cut(s) 170, 783
AcsI RAATTY 1 cut(s) 98
AcvI CACGTG 1 cut(s) 634
AcyI GRCGYC 3 cut(s) 24, 243, 417
AfaI GTAC 2 cut(s) 605, 899
AfiI CCNNNNNNNGG 6 cut(s) 185, 452, 540, 772, 840, 879
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 676, 685
AhdI GACNNNNNGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 878
AluBI AGCT 6 cut(s) 49, 208, 283, 571, 739, 759
AluI AGCT 6 cut(s) 49, 208, 283, 571, 739, 759
Alw21I GWGCWC 2 cut(s) 285, 741
Alw26I GTCTC 4 cut(s) 169, 384, 472, 696
AlwI GGATC 2 cut(s) 170, 783
AoxI GGCC 8 cut(s) 72, 226, 268, 286, 426, 528, 617, 876
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 4 cut(s) 219, 624, 756, 759
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 5 cut(s) 89, 146, 374, 648, 749
AspS9I GGNCC 6 cut(s) 72, 73, 287, 618, 876, 882
AsuC2I CCSGG 7 cut(s) 17, 225, 482, 535, 554, 621, 874
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 4 cut(s) 76, 285, 741, 834
BbrPI CACGTG 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 285, 741
BbvI GCAGC 4 cut(s) 206, 611, 746, 768
BccI CCATC 1 cut(s) 818
BceAI ACGGC 4 cut(s) 131, 197, 416, 733
BciT130I CCWGG 1 cut(s) 880
BcnI CCSGG 7 cut(s) 17, 225, 482, 535, 554, 621, 874
BcoDI GTCTC 4 cut(s) 169, 384, 472, 696
BfmI CTRYAG 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 897
BglI GCCNNNNNGGC 1 cut(s) 425
BglII AGATCT 1 cut(s) 501
Bme1390I CCNGG 8 cut(s) 17, 225, 482, 535, 554, 621, 874, 880
Bme18I GGWCC 1 cut(s) 882
BmeRI GACNNNNNGTC 1 cut(s) 298
BmgT120I GGNCC 6 cut(s) 72, 73, 287, 618, 876, 882
BmiI GGNNCC 3 cut(s) 74, 289, 877
BmrFI CCNGG 8 cut(s) 17, 225, 482, 535, 554, 621, 874, 880
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BoxI GACNNNNGTC 1 cut(s) 861
BpiI GAAGAC 1 cut(s) 137
BplI GAGNNNNNCTC 2 cut(s) 723, 755
BpuMI CCSGG 7 cut(s) 17, 225, 482, 535, 554, 621, 874
Bsa29I ATCGAT 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 634
BsaHI GRCGYC 3 cut(s) 24, 243, 417
BsaI GGTCTC 3 cut(s) 384, 472, 696
BsaJI CCNNGG 5 cut(s) 223, 423, 534, 589, 873
BsaWI WCCGGW 1 cut(s) 470
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 404, 434
Bsc4I CCNNNNNNNGG 6 cut(s) 185, 452, 540, 772, 840, 879
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 74, 298, 620
BseBI CCWGG 1 cut(s) 880
BseCI ATCGAT 1 cut(s) 512
BseDI CCNNGG 5 cut(s) 223, 423, 534, 589, 873
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 6 cut(s) 185, 452, 540, 772, 840, 879
BseMII CTCAG 1 cut(s) 707
BseNI ACTGG 3 cut(s) 74, 298, 620
BseRI GAGGAG 8 cut(s) 94, 221, 295, 298, 301, 304, 345, 739
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 206, 611, 746, 768
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 4 cut(s) 144, 279, 591, 804
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 8 cut(s) 74, 228, 270, 288, 428, 530, 619, 878
BshVI ATCGAT 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 2 cut(s) 285, 741
BslI CCNNNNNNNGG 6 cut(s) 185, 452, 540, 772, 840, 879
BsmAI GTCTC 4 cut(s) 169, 384, 472, 696
BsmBI CGTCTC 1 cut(s) 169
BsnI GGCC 8 cut(s) 74, 228, 270, 288, 428, 530, 619, 878
Bso31I GGTCTC 3 cut(s) 384, 472, 696
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 4 cut(s) 76, 285, 741, 834
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 5 cut(s) 175, 391, 501, 509, 775
BspANI GGCC 8 cut(s) 74, 228, 270, 288, 428, 530, 619, 878
BspCNI CTCAG 1 cut(s) 706
BspDI ATCGAT 1 cut(s) 512
BspFNI CGCG 4 cut(s) 144, 279, 591, 804
BspLI GGNNCC 3 cut(s) 74, 289, 877
BspMAI CTGCAG 1 cut(s) 509
BspMI ACCTGC 1 cut(s) 897
BspPI GGATC 2 cut(s) 170, 783
BspTNI GGTCTC 3 cut(s) 384, 472, 696
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 3 cut(s) 74, 298, 620
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 5 cut(s) 223, 423, 534, 589, 873
BssMI GATC 5 cut(s) 175, 391, 501, 509, 775
BssNI GRCGYC 3 cut(s) 24, 243, 417
Bst2UI CCWGG 1 cut(s) 880
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 3 cut(s) 254, 322, 633
BstACI GRCGYC 3 cut(s) 24, 243, 417
BstAPI GCANNNNNTGC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 7 cut(s) 76, 85, 91, 187, 210, 281, 830
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 4 cut(s) 144, 279, 591, 804
BstHHI GCGC 5 cut(s) 89, 146, 374, 648, 749
BstKTI GATC 5 cut(s) 178, 394, 504, 512, 778
BstMAI GTCTC 4 cut(s) 169, 384, 472, 696
BstMBI GATC 5 cut(s) 175, 391, 501, 509, 775
BstMCI CGRYCG 1 cut(s) 486
BstNI CCWGG 1 cut(s) 880
BstPAI GACNNNNGTC 1 cut(s) 861
BstSCI CCNGG 8 cut(s) 15, 223, 480, 533, 552, 619, 872, 878
BstSFI CTRYAG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 4 cut(s) 144, 279, 591, 804
BstV1I GCAGC 4 cut(s) 206, 611, 746, 768
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 501, 775
BstXI CCANNNNNNTGG 1 cut(s) 824
BstYI RGATCY 2 cut(s) 501, 775
Bsu15I ATCGAT 1 cut(s) 512
BsuRI GGCC 8 cut(s) 74, 228, 270, 288, 428, 530, 619, 878
BsuTUI ATCGAT 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 589
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 897
Cac8I GCNNGC 7 cut(s) 76, 85, 91, 187, 210, 281, 830
CfoI GCGC 5 cut(s) 89, 146, 374, 648, 749
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 6 cut(s) 72, 73, 287, 618, 876, 882
Cfr42I CCGCGG 1 cut(s) 592
ClaI ATCGAT 1 cut(s) 512
CseI GACGC 5 cut(s) 19, 232, 425, 616, 810
Csp6I GTAC 2 cut(s) 604, 898
CviAII CATG 2 cut(s) 818, 866
CviQI GTAC 2 cut(s) 604, 898
DdeI CTNAG 1 cut(s) 693
DpnI GATC 5 cut(s) 177, 393, 503, 511, 777
DpnII GATC 5 cut(s) 175, 391, 501, 509, 775
DriI GACNNNNNGTC 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 254, 322, 633
Eam1105I GACNNNNNGTC 1 cut(s) 298
EarI CTCTTC 3 cut(s) 254, 322, 633
EciI GGCGGA 5 cut(s) 157, 348, 511, 718, 775
Ecl136II GAGCTC 2 cut(s) 283, 739
Eco24I GRGCYC 4 cut(s) 76, 285, 741, 834
Eco31I GGTCTC 3 cut(s) 384, 472, 696
Eco47I GGWCC 1 cut(s) 882
Eco53kI GAGCTC 2 cut(s) 283, 739
Eco72I CACGTG 1 cut(s) 634
EcoICRI GAGCTC 2 cut(s) 283, 739
EcoO109I RGGNCCY 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 878
EcoT38I GRGCYC 4 cut(s) 76, 285, 741, 834
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 821, 869
FaiI YATR 6 cut(s) 387, 654, 656, 819, 849, 867
FatI CATG 2 cut(s) 817, 865
FauI CCCGC 2 cut(s) 83, 190
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 4 cut(s) 76, 285, 741, 834
GlaI GCGC 5 cut(s) 88, 145, 373, 647, 748
HaeIII GGCC 8 cut(s) 74, 228, 270, 288, 428, 530, 619, 878
HgaI GACGC 5 cut(s) 19, 232, 425, 616, 810
HhaI GCGC 5 cut(s) 89, 146, 374, 648, 749
Hin1I GRCGYC 3 cut(s) 24, 243, 417
Hin1II CATG 2 cut(s) 821, 869
Hin6I GCGC 5 cut(s) 87, 144, 372, 646, 747
HinP1I GCGC 5 cut(s) 87, 144, 372, 646, 747
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 3 cut(s) 544, 596, 732
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 2 cut(s) 412, 631
Hpy188I TCNGA 7 cut(s) 33, 262, 424, 442, 549, 613, 665
Hpy188III TCNNGA 3 cut(s) 7, 487, 541
Hpy8I GTNNAC 2 cut(s) 412, 631
Hpy99I CGWCG 8 cut(s) 13, 26, 29, 59, 176, 419, 804, 839
HpyAV CCTTC 1 cut(s) 799
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 4 cut(s) 24, 36, 120, 633
HpyCH4V TGCA 3 cut(s) 93, 507, 756
HpyF3I CTNAG 1 cut(s) 693
HpySE526I ACGT 4 cut(s) 24, 36, 120, 633
Hsp92I GRCGYC 3 cut(s) 24, 243, 417
Hsp92II CATG 2 cut(s) 821, 869
HspAI GCGC 5 cut(s) 87, 144, 372, 646, 747
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
KspI CCGCGG 1 cut(s) 592
Kzo9I GATC 5 cut(s) 175, 391, 501, 509, 775
LmnI GCTCC 3 cut(s) 18, 556, 726
Lsp1109I GCAGC 4 cut(s) 206, 611, 746, 768
MaeII ACGT 4 cut(s) 24, 36, 120, 633
MaeIII GTNAC 1 cut(s) 519
MalI GATC 5 cut(s) 177, 393, 503, 511, 777
MboI GATC 5 cut(s) 175, 391, 501, 509, 775
MboII GAAGA 5 cut(s) 142, 241, 309, 511, 650
MflI RGATCY 2 cut(s) 501, 775
MhlI GDGCHC 4 cut(s) 76, 285, 741, 834
MluCI AATT 1 cut(s) 98
MlyI GAGTC 2 cut(s) 590, 741
MmeI TCCRAC 1 cut(s) 636
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 1 cut(s) 904
MslI CAYNNNNRTG 1 cut(s) 822
MspA1I CMGCKG 2 cut(s) 591, 759
MspR9I CCNGG 8 cut(s) 17, 225, 482, 535, 554, 621, 874, 880
MvaI CCWGG 1 cut(s) 880
MvnI CGCG 4 cut(s) 144, 279, 591, 804
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 7 cut(s) 17, 225, 482, 535, 554, 621, 874
NdeII GATC 5 cut(s) 175, 391, 501, 509, 775
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 2 cut(s) 821, 869
NlaIV GGNNCC 3 cut(s) 74, 289, 877
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 519
PcsI WCGNNNNNNNCGW 4 cut(s) 33, 168, 258, 420
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 544
PflFI GACNNNGTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 15
PleI GAGTC 2 cut(s) 590, 740
PmaCI CACGTG 1 cut(s) 634
PmlI CACGTG 1 cut(s) 634
PpsI GAGTC 2 cut(s) 590, 740
Ppu21I YACGTR 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 861
Psp124BI GAGCTC 2 cut(s) 285, 741
Psp6I CCWGG 1 cut(s) 878
PspCI CACGTG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 878
PspN4I GGNNCC 3 cut(s) 74, 289, 877
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 6 cut(s) 72, 73, 287, 618, 876, 882
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PstI CTGCAG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 501, 775
PsyI GACNNNGTC 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 759
RsaI GTAC 2 cut(s) 605, 899
RsaNI GTAC 2 cut(s) 604, 898
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 2 cut(s) 285, 741
SacII CCGCGG 1 cut(s) 592
SaqAI TTAA 1 cut(s) 904
Sau3AI GATC 5 cut(s) 175, 391, 501, 509, 775
Sau96I GGNCC 6 cut(s) 72, 73, 287, 618, 876, 882
SchI GAGTC 2 cut(s) 590, 741
ScrFI CCNGG 8 cut(s) 17, 225, 482, 535, 554, 621, 874, 880
SduI GDGCHC 4 cut(s) 76, 285, 741, 834
SfcI CTRYAG 1 cut(s) 505
Sfr303I CCGCGG 1 cut(s) 592
SgrBI CCGCGG 1 cut(s) 592
SinI GGWCC 1 cut(s) 882
SmiMI CAYNNNNRTG 1 cut(s) 822
Sse9I AATT 1 cut(s) 98
SstI GAGCTC 2 cut(s) 285, 741
StyD4I CCNGG 8 cut(s) 15, 223, 480, 533, 552, 619, 872, 878
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 4 cut(s) 27, 39, 123, 636
TaqI TCGA 6 cut(s) 8, 252, 273, 402, 512, 735
TaqII GACCGA 1 cut(s) 899
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 904
Tru9I TTAA 1 cut(s) 904
TscAI CASTG 1 cut(s) 74
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 4 cut(s) 219, 624, 756, 759
Tsp45I GTSAC 1 cut(s) 519
TspRI CASTG 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 882
XapI RAATTY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 38
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.