Phytochrome A-associated F-box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02440 |
| fragaria_vesca | FvH4_2g25611 |
| malus_domestica | MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1 |
| prunus_persica | Prupe.8G260500_v2.0.a1 |
| pyrus_communis | pycom03g22750 pycom11g27150 pycom11g27180 |
| rosa_chinensis | RchiOBHm_Chr6g0293871 |
| rosa_laevigata | RLG00000011916 |
| rosa_multiflora | Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00261840 |
| rosa_samantha | Rh6AG352100 Rh6BG358900 Rh6CG366300 |
| rosa_wichuraiana | Rw6G030640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 27 |
| Acc36I | ACCTGC | 1 cut(s) | 897 |
| AccII | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| AclWI | GGATC | 2 cut(s) | 170, 783 |
| AcsI | RAATTY | 1 cut(s) | 98 |
| AcvI | CACGTG | 1 cut(s) | 634 |
| AcyI | GRCGYC | 3 cut(s) | 24, 243, 417 |
| AfaI | GTAC | 2 cut(s) | 605, 899 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 185, 452, 540, 772, 840, 879 |
| AflIII | ACRYGT | 1 cut(s) | 36 |
| AgsI | TTSAA | 2 cut(s) | 676, 685 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 298 |
| AjnI | CCWGG | 1 cut(s) | 878 |
| AluBI | AGCT | 6 cut(s) | 49, 208, 283, 571, 739, 759 |
| AluI | AGCT | 6 cut(s) | 49, 208, 283, 571, 739, 759 |
| Alw21I | GWGCWC | 2 cut(s) | 285, 741 |
| Alw26I | GTCTC | 4 cut(s) | 169, 384, 472, 696 |
| AlwI | GGATC | 2 cut(s) | 170, 783 |
| AoxI | GGCC | 8 cut(s) | 72, 226, 268, 286, 426, 528, 617, 876 |
| ApaI | GGGCCC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 4 cut(s) | 219, 624, 756, 759 |
| ApoI | RAATTY | 1 cut(s) | 98 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 38 |
| AspLEI | GCGC | 5 cut(s) | 89, 146, 374, 648, 749 |
| AspS9I | GGNCC | 6 cut(s) | 72, 73, 287, 618, 876, 882 |
| AsuC2I | CCSGG | 7 cut(s) | 17, 225, 482, 535, 554, 621, 874 |
| AsuHPI | GGTGA | 1 cut(s) | 485 |
| AvaII | GGWCC | 1 cut(s) | 882 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BanII | GRGCYC | 4 cut(s) | 76, 285, 741, 834 |
| BbrPI | CACGTG | 1 cut(s) | 634 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 2 cut(s) | 285, 741 |
| BbvI | GCAGC | 4 cut(s) | 206, 611, 746, 768 |
| BccI | CCATC | 1 cut(s) | 818 |
| BceAI | ACGGC | 4 cut(s) | 131, 197, 416, 733 |
| BciT130I | CCWGG | 1 cut(s) | 880 |
| BcnI | CCSGG | 7 cut(s) | 17, 225, 482, 535, 554, 621, 874 |
| BcoDI | GTCTC | 4 cut(s) | 169, 384, 472, 696 |
| BfmI | CTRYAG | 1 cut(s) | 505 |
| BfuAI | ACCTGC | 1 cut(s) | 897 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 425 |
| BglII | AGATCT | 1 cut(s) | 501 |
| Bme1390I | CCNGG | 8 cut(s) | 17, 225, 482, 535, 554, 621, 874, 880 |
| Bme18I | GGWCC | 1 cut(s) | 882 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 298 |
| BmgT120I | GGNCC | 6 cut(s) | 72, 73, 287, 618, 876, 882 |
| BmiI | GGNNCC | 3 cut(s) | 74, 289, 877 |
| BmrFI | CCNGG | 8 cut(s) | 17, 225, 482, 535, 554, 621, 874, 880 |
| BmrI | ACTGGG | 1 cut(s) | 79 |
| BmuI | ACTGGG | 1 cut(s) | 79 |
| BoxI | GACNNNNGTC | 1 cut(s) | 861 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 723, 755 |
| BpuMI | CCSGG | 7 cut(s) | 17, 225, 482, 535, 554, 621, 874 |
| Bsa29I | ATCGAT | 1 cut(s) | 512 |
| BsaAI | YACGTR | 1 cut(s) | 634 |
| BsaHI | GRCGYC | 3 cut(s) | 24, 243, 417 |
| BsaI | GGTCTC | 3 cut(s) | 384, 472, 696 |
| BsaJI | CCNNGG | 5 cut(s) | 223, 423, 534, 589, 873 |
| BsaWI | WCCGGW | 1 cut(s) | 470 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 287, 317, 404, 434 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 185, 452, 540, 772, 840, 879 |
| Bse118I | RCCGGY | 1 cut(s) | 185 |
| Bse1I | ACTGG | 3 cut(s) | 74, 298, 620 |
| BseBI | CCWGG | 1 cut(s) | 880 |
| BseCI | ATCGAT | 1 cut(s) | 512 |
| BseDI | CCNNGG | 5 cut(s) | 223, 423, 534, 589, 873 |
| BseGI | GGATG | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 185, 452, 540, 772, 840, 879 |
| BseMII | CTCAG | 1 cut(s) | 707 |
| BseNI | ACTGG | 3 cut(s) | 74, 298, 620 |
| BseRI | GAGGAG | 8 cut(s) | 94, 221, 295, 298, 301, 304, 345, 739 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseXI | GCAGC | 4 cut(s) | 206, 611, 746, 768 |
| BsgI | GTGCAG | 1 cut(s) | 76 |
| Bsh1236I | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| Bsh1285I | CGRYCG | 1 cut(s) | 486 |
| BshFI | GGCC | 8 cut(s) | 74, 228, 270, 288, 428, 530, 619, 878 |
| BshVI | ATCGAT | 1 cut(s) | 512 |
| BsiEI | CGRYCG | 1 cut(s) | 486 |
| BsiHKAI | GWGCWC | 2 cut(s) | 285, 741 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 185, 452, 540, 772, 840, 879 |
| BsmAI | GTCTC | 4 cut(s) | 169, 384, 472, 696 |
| BsmBI | CGTCTC | 1 cut(s) | 169 |
| BsnI | GGCC | 8 cut(s) | 74, 228, 270, 288, 428, 530, 619, 878 |
| Bso31I | GGTCTC | 3 cut(s) | 384, 472, 696 |
| Bsp120I | GGGCCC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 4 cut(s) | 76, 285, 741, 834 |
| Bsp1407I | TGTACA | 1 cut(s) | 603 |
| Bsp143I | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| BspANI | GGCC | 8 cut(s) | 74, 228, 270, 288, 428, 530, 619, 878 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspDI | ATCGAT | 1 cut(s) | 512 |
| BspFNI | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| BspLI | GGNNCC | 3 cut(s) | 74, 289, 877 |
| BspMAI | CTGCAG | 1 cut(s) | 509 |
| BspMI | ACCTGC | 1 cut(s) | 897 |
| BspPI | GGATC | 2 cut(s) | 170, 783 |
| BspTNI | GGTCTC | 3 cut(s) | 384, 472, 696 |
| BsrFI | RCCGGY | 1 cut(s) | 185 |
| BsrGI | TGTACA | 1 cut(s) | 603 |
| BsrI | ACTGG | 3 cut(s) | 74, 298, 620 |
| BssAI | RCCGGY | 1 cut(s) | 185 |
| BssECI | CCNNGG | 5 cut(s) | 223, 423, 534, 589, 873 |
| BssMI | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| BssNI | GRCGYC | 3 cut(s) | 24, 243, 417 |
| Bst2UI | CCWGG | 1 cut(s) | 880 |
| Bst4CI | ACNGT | 1 cut(s) | 409 |
| Bst6I | CTCTTC | 3 cut(s) | 254, 322, 633 |
| BstACI | GRCGYC | 3 cut(s) | 24, 243, 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 123 |
| BstAUI | TGTACA | 1 cut(s) | 603 |
| BstBAI | YACGTR | 1 cut(s) | 634 |
| BstC8I | GCNNGC | 7 cut(s) | 76, 85, 91, 187, 210, 281, 830 |
| BstDEI | CTNAG | 1 cut(s) | 693 |
| BstDSI | CCRYGG | 1 cut(s) | 589 |
| BstF5I | GGATG | 1 cut(s) | 330 |
| BstFNI | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| BstHHI | GCGC | 5 cut(s) | 89, 146, 374, 648, 749 |
| BstKTI | GATC | 5 cut(s) | 178, 394, 504, 512, 778 |
| BstMAI | GTCTC | 4 cut(s) | 169, 384, 472, 696 |
| BstMBI | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| BstMCI | CGRYCG | 1 cut(s) | 486 |
| BstNI | CCWGG | 1 cut(s) | 880 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 861 |
| BstSCI | CCNGG | 8 cut(s) | 15, 223, 480, 533, 552, 619, 872, 878 |
| BstSFI | CTRYAG | 1 cut(s) | 505 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstUI | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| BstV1I | GCAGC | 4 cut(s) | 206, 611, 746, 768 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| BstX2I | RGATCY | 2 cut(s) | 501, 775 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 824 |
| BstYI | RGATCY | 2 cut(s) | 501, 775 |
| Bsu15I | ATCGAT | 1 cut(s) | 512 |
| BsuRI | GGCC | 8 cut(s) | 74, 228, 270, 288, 428, 530, 619, 878 |
| BsuTUI | ATCGAT | 1 cut(s) | 512 |
| BtgI | CCRYGG | 1 cut(s) | 589 |
| BtsCI | GGATG | 1 cut(s) | 330 |
| BtsIMutI | CAGTG | 1 cut(s) | 67 |
| BveI | ACCTGC | 1 cut(s) | 897 |
| Cac8I | GCNNGC | 7 cut(s) | 76, 85, 91, 187, 210, 281, 830 |
| CfoI | GCGC | 5 cut(s) | 89, 146, 374, 648, 749 |
| Cfr10I | RCCGGY | 1 cut(s) | 185 |
| Cfr13I | GGNCC | 6 cut(s) | 72, 73, 287, 618, 876, 882 |
| Cfr42I | CCGCGG | 1 cut(s) | 592 |
| ClaI | ATCGAT | 1 cut(s) | 512 |
| CseI | GACGC | 5 cut(s) | 19, 232, 425, 616, 810 |
| Csp6I | GTAC | 2 cut(s) | 604, 898 |
| CviAII | CATG | 2 cut(s) | 818, 866 |
| CviQI | GTAC | 2 cut(s) | 604, 898 |
| DdeI | CTNAG | 1 cut(s) | 693 |
| DpnI | GATC | 5 cut(s) | 177, 393, 503, 511, 777 |
| DpnII | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| DriI | GACNNNNNGTC | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 3 cut(s) | 254, 322, 633 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 298 |
| EarI | CTCTTC | 3 cut(s) | 254, 322, 633 |
| EciI | GGCGGA | 5 cut(s) | 157, 348, 511, 718, 775 |
| Ecl136II | GAGCTC | 2 cut(s) | 283, 739 |
| Eco24I | GRGCYC | 4 cut(s) | 76, 285, 741, 834 |
| Eco31I | GGTCTC | 3 cut(s) | 384, 472, 696 |
| Eco47I | GGWCC | 1 cut(s) | 882 |
| Eco53kI | GAGCTC | 2 cut(s) | 283, 739 |
| Eco72I | CACGTG | 1 cut(s) | 634 |
| EcoICRI | GAGCTC | 2 cut(s) | 283, 739 |
| EcoO109I | RGGNCCY | 1 cut(s) | 876 |
| EcoRII | CCWGG | 1 cut(s) | 878 |
| EcoT38I | GRGCYC | 4 cut(s) | 76, 285, 741, 834 |
| Esp3I | CGTCTC | 1 cut(s) | 169 |
| FaeI | CATG | 2 cut(s) | 821, 869 |
| FaiI | YATR | 6 cut(s) | 387, 654, 656, 819, 849, 867 |
| FatI | CATG | 2 cut(s) | 817, 865 |
| FauI | CCCGC | 2 cut(s) | 83, 190 |
| FokI | GGATG | 1 cut(s) | 317 |
| FriOI | GRGCYC | 4 cut(s) | 76, 285, 741, 834 |
| GlaI | GCGC | 5 cut(s) | 88, 145, 373, 647, 748 |
| HaeIII | GGCC | 8 cut(s) | 74, 228, 270, 288, 428, 530, 619, 878 |
| HgaI | GACGC | 5 cut(s) | 19, 232, 425, 616, 810 |
| HhaI | GCGC | 5 cut(s) | 89, 146, 374, 648, 749 |
| Hin1I | GRCGYC | 3 cut(s) | 24, 243, 417 |
| Hin1II | CATG | 2 cut(s) | 821, 869 |
| Hin6I | GCGC | 5 cut(s) | 87, 144, 372, 646, 747 |
| HinP1I | GCGC | 5 cut(s) | 87, 144, 372, 646, 747 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 3 cut(s) | 544, 596, 732 |
| HphI | GGTGA | 1 cut(s) | 485 |
| Hpy166II | GTNNAC | 2 cut(s) | 412, 631 |
| Hpy188I | TCNGA | 7 cut(s) | 33, 262, 424, 442, 549, 613, 665 |
| Hpy188III | TCNNGA | 3 cut(s) | 7, 487, 541 |
| Hpy8I | GTNNAC | 2 cut(s) | 412, 631 |
| Hpy99I | CGWCG | 8 cut(s) | 13, 26, 29, 59, 176, 419, 804, 839 |
| HpyAV | CCTTC | 1 cut(s) | 799 |
| HpyCH4III | ACNGT | 1 cut(s) | 409 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 36, 120, 633 |
| HpyCH4V | TGCA | 3 cut(s) | 93, 507, 756 |
| HpyF3I | CTNAG | 1 cut(s) | 693 |
| HpySE526I | ACGT | 4 cut(s) | 24, 36, 120, 633 |
| Hsp92I | GRCGYC | 3 cut(s) | 24, 243, 417 |
| Hsp92II | CATG | 2 cut(s) | 821, 869 |
| HspAI | GCGC | 5 cut(s) | 87, 144, 372, 646, 747 |
| KroI | GCCGGC | 1 cut(s) | 185 |
| KroNI | GCCGGC | 1 cut(s) | 187 |
| KspI | CCGCGG | 1 cut(s) | 592 |
| Kzo9I | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| LmnI | GCTCC | 3 cut(s) | 18, 556, 726 |
| Lsp1109I | GCAGC | 4 cut(s) | 206, 611, 746, 768 |
| MaeII | ACGT | 4 cut(s) | 24, 36, 120, 633 |
| MaeIII | GTNAC | 1 cut(s) | 519 |
| MalI | GATC | 5 cut(s) | 177, 393, 503, 511, 777 |
| MboI | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| MboII | GAAGA | 5 cut(s) | 142, 241, 309, 511, 650 |
| MflI | RGATCY | 2 cut(s) | 501, 775 |
| MhlI | GDGCHC | 4 cut(s) | 76, 285, 741, 834 |
| MluCI | AATT | 1 cut(s) | 98 |
| MlyI | GAGTC | 2 cut(s) | 590, 741 |
| MmeI | TCCRAC | 1 cut(s) | 636 |
| MroNI | GCCGGC | 1 cut(s) | 185 |
| MroXI | GAANNNNTTC | 1 cut(s) | 38 |
| MseI | TTAA | 1 cut(s) | 904 |
| MslI | CAYNNNNRTG | 1 cut(s) | 822 |
| MspA1I | CMGCKG | 2 cut(s) | 591, 759 |
| MspR9I | CCNGG | 8 cut(s) | 17, 225, 482, 535, 554, 621, 874, 880 |
| MvaI | CCWGG | 1 cut(s) | 880 |
| MvnI | CGCG | 4 cut(s) | 144, 279, 591, 804 |
| NaeI | GCCGGC | 1 cut(s) | 187 |
| NciI | CCSGG | 7 cut(s) | 17, 225, 482, 535, 554, 621, 874 |
| NdeII | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| NgoMIV | GCCGGC | 1 cut(s) | 185 |
| NlaIII | CATG | 2 cut(s) | 821, 869 |
| NlaIV | GGNNCC | 3 cut(s) | 74, 289, 877 |
| NmeAIII | GCCGAG | 1 cut(s) | 264 |
| NmuCI | GTSAC | 1 cut(s) | 519 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 33, 168, 258, 420 |
| PdiI | GCCGGC | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 1 cut(s) | 38 |
| PfeI | GAWTC | 1 cut(s) | 544 |
| PflFI | GACNNNGTC | 1 cut(s) | 23 |
| PfoI | TCCNGGA | 1 cut(s) | 15 |
| PleI | GAGTC | 2 cut(s) | 590, 740 |
| PmaCI | CACGTG | 1 cut(s) | 634 |
| PmlI | CACGTG | 1 cut(s) | 634 |
| PpsI | GAGTC | 2 cut(s) | 590, 740 |
| Ppu21I | YACGTR | 1 cut(s) | 634 |
| PshAI | GACNNNNGTC | 1 cut(s) | 861 |
| Psp124BI | GAGCTC | 2 cut(s) | 285, 741 |
| Psp6I | CCWGG | 1 cut(s) | 878 |
| PspCI | CACGTG | 1 cut(s) | 634 |
| PspGI | CCWGG | 1 cut(s) | 878 |
| PspN4I | GGNNCC | 3 cut(s) | 74, 289, 877 |
| PspOMI | GGGCCC | 1 cut(s) | 72 |
| PspPI | GGNCC | 6 cut(s) | 72, 73, 287, 618, 876, 882 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 26, 58 |
| PstI | CTGCAG | 1 cut(s) | 509 |
| PsuI | RGATCY | 2 cut(s) | 501, 775 |
| PsyI | GACNNNGTC | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 759 |
| RsaI | GTAC | 2 cut(s) | 605, 899 |
| RsaNI | GTAC | 2 cut(s) | 604, 898 |
| RseI | CAYNNNNRTG | 1 cut(s) | 822 |
| SacI | GAGCTC | 2 cut(s) | 285, 741 |
| SacII | CCGCGG | 1 cut(s) | 592 |
| SaqAI | TTAA | 1 cut(s) | 904 |
| Sau3AI | GATC | 5 cut(s) | 175, 391, 501, 509, 775 |
| Sau96I | GGNCC | 6 cut(s) | 72, 73, 287, 618, 876, 882 |
| SchI | GAGTC | 2 cut(s) | 590, 741 |
| ScrFI | CCNGG | 8 cut(s) | 17, 225, 482, 535, 554, 621, 874, 880 |
| SduI | GDGCHC | 4 cut(s) | 76, 285, 741, 834 |
| SfcI | CTRYAG | 1 cut(s) | 505 |
| Sfr303I | CCGCGG | 1 cut(s) | 592 |
| SgrBI | CCGCGG | 1 cut(s) | 592 |
| SinI | GGWCC | 1 cut(s) | 882 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 822 |
| Sse9I | AATT | 1 cut(s) | 98 |
| SstI | GAGCTC | 2 cut(s) | 285, 741 |
| StyD4I | CCNGG | 8 cut(s) | 15, 223, 480, 533, 552, 619, 872, 878 |
| TaaI | ACNGT | 1 cut(s) | 409 |
| TaiI | ACGT | 4 cut(s) | 27, 39, 123, 636 |
| TaqI | TCGA | 6 cut(s) | 8, 252, 273, 402, 512, 735 |
| TaqII | GACCGA | 1 cut(s) | 899 |
| TasI | AATT | 1 cut(s) | 98 |
| TatI | WGTACW | 1 cut(s) | 603 |
| TfiI | GAWTC | 1 cut(s) | 544 |
| Tru1I | TTAA | 1 cut(s) | 904 |
| Tru9I | TTAA | 1 cut(s) | 904 |
| TscAI | CASTG | 1 cut(s) | 74 |
| TseFI | GTSAC | 1 cut(s) | 519 |
| TseI | GCWGC | 4 cut(s) | 219, 624, 756, 759 |
| Tsp45I | GTSAC | 1 cut(s) | 519 |
| TspRI | CASTG | 1 cut(s) | 74 |
| Tth111I | GACNNNGTC | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 1 cut(s) | 882 |
| XapI | RAATTY | 1 cut(s) | 98 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 372 |
| XmnI | GAANNNNTTC | 1 cut(s) | 38 |
| ZraI | GACGTC | 1 cut(s) | 25 |