Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Reverse (-)

55980819 .. 55982000

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTTCTTCTTCGTCTTCAACCTCACTCTTCTTCTTCTTCTTCTTCTCTCTCCTCTCCTTTTTGAACATGTTCTCCAAGCTGGAGGACTACCCTTGCAACTGGGCTCGCCTCTGTCATCTCCCATCTTGTCTCCGCTGCCTCATCCGGTCTTTCGACAACTGGTCTTCCCTCCACAAGCTCGCCGTCTTCTGCCCCAGCCTCCTCCACTTCAGCATCCTCTTCGAGAATTATGATTTCAACCTCGAATGCGAGCTCGACCCGATGACAATTACCGCCCCCAATCCTAATCAAATCCCTCCTCCAGCCAAATTCAACAACCGCCCCCCCCGAATTGATACACCAACTCCTCAAATCTCCAGGCGGAGCATCAACACAGAACACCACCTCTTGTCCACCTTTCGCCGTTCTTCTTTATCGGAGAAACGTCATTCACTGGAAACTAGAGCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

151

Amino Acids

17.56

Weight (kDa)

8.63

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	136, 276, 322, 364
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	21, 67, 241, 316
AhdI	GACNNNNNGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	359
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	82, 181, 256
AluI	AGCT	3 cut(s)	82, 181, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	71
BanII	GRGCYC	3 cut(s)	109, 258, 451
BbsI	GAAGAC	3 cut(s)	9, 159, 181
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	2 cut(s)	170, 390
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	225, 378
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	3 cut(s)	9, 159, 181
BpmI	CTGGAG	3 cut(s)	104, 288, 343
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 331, 361
Bse1I	ACTGG	3 cut(s)	107, 167, 441
BseBI	CCWGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	144, 216
BseNI	ACTGG	3 cut(s)	107, 167, 441
BseRI	GAGGAG	4 cut(s)	44, 194, 291, 339
BseXI	GCAGC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	109, 258, 451
BspACI	CCGC	4 cut(s)	136, 276, 322, 364
BsrI	ACTGG	3 cut(s)	107, 167, 441
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	35, 227
BstC8I	GCNNGC	3 cut(s)	109, 183, 254
BstF5I	GGATG	2 cut(s)	144, 216
BstMAI	GTCTC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	3 cut(s)	9, 159, 181
BtsCI	GGATG	2 cut(s)	144, 216
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	109, 183, 254
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	8 cut(s)	5, 82, 107, 181, 201, 256, 308, 449
CviKI_1	RGCY	8 cut(s)	5, 82, 107, 181, 201, 256, 308, 449
DriI	GACNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	35, 227
Eam1105I	GACNNNNNGTC	1 cut(s)	163
EarI	CTCTTC	2 cut(s)	35, 227
EciI	GGCGGA	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	3 cut(s)	109, 258, 451
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	359
EcoT38I	GRGCYC	3 cut(s)	109, 258, 451
FaeI	CATG	1 cut(s)	73
FaiI	YATR	2 cut(s)	71, 234
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	2 cut(s)	131, 203
FriOI	GRGCYC	3 cut(s)	109, 258, 451
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	1 cut(s)	139
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	3 cut(s)	104, 288, 343
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	1 cut(s)	73
HpaII	CCGG	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	9 cut(s)	68, 88, 148, 161, 211, 318, 346, 373, 422
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	225, 378
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	109, 258, 451
MluCI	AATT	4 cut(s)	229, 270, 311, 333
MroXI	GAANNNNTTC	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	361
NlaIII	CATG	1 cut(s)	73
NspI	RCATGY	1 cut(s)	73
PciI	ACATGT	1 cut(s)	69
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	3 cut(s)	109, 258, 451
SetI	ASST	8 cut(s)	26, 84, 183, 246, 258, 390, 401, 430
SfaNI	GCATC	2 cut(s)	225, 378
Sse9I	AATT	4 cut(s)	229, 270, 311, 333
SsiI	CCGC	4 cut(s)	136, 276, 322, 364
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	359
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	4 cut(s)	156, 225, 246, 258
TasI	AATT	4 cut(s)	229, 270, 311, 333
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	138
TspRI	CASTG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.