Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266553.1

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Reverse (-)

56 .. 819

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 764 bp

ccgccgcctcctcctccgagccccccggcggctggtcctccctccacaagctggcagtctgctgccccggcctcctccactccggcgtcctcttcgagaattccgatttcggcctcgaacgcgagctcggccccgacgagagttaccgcccccaatcgcaatcggagccctcctcctcctcctccagccaaattcaccaaccaccgtcgccgccgccggcttccgattgcgcttggtctctgtacgacgatctgtatttcgatacggtttacgacgagtccgaatcggatgctgttgctgcccccgagaacggcgtcgtttcagtgggcggtgagtttccgattcaaaaaaggcgaaagatctgcaggtcgatgaggtcgcatttggcttccggggtctggaatctgagccgcgagcaaggtaacaagcttctccacagccggtttcgcggcgattgcctctacatctgtgactggcctgggtgtgttcacattgaagagaagcggaattacatgcttttcagaggggttttcaaggacttcaaaggctctcaagtgtggaggaatatcaaggacgccaagaggaccaaagtcgacctcaattgcgcctactgcgcctgcaagcagacttgggatttgcattccgccttctgcttgagacgcggtttcggctaccatgacgatggcgaacccgttgtcagggcttatgtgtgcgacaatggacatgtctctggggcctggaccgacttgccattgtatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

253

Amino Acids

28.26

Weight (kDa)

5.99

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	4 cut(s)	122, 413, 449, 662
AcsI	RAATTY	2 cut(s)	99, 191
AcyI	GRCGYC	3 cut(s)	86, 314, 575
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	6 cut(s)	28, 32, 51, 310, 398, 698
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	4 cut(s)	346, 496, 534, 543
AjnI	CCWGG	2 cut(s)	477, 736
AluBI	AGCT	3 cut(s)	51, 126, 429
AluI	AGCT	3 cut(s)	51, 126, 429
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	242, 651, 732
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	5 cut(s)	69, 111, 129, 475, 734
ApeKI	GCWGC	2 cut(s)	62, 298
ApoI	RAATTY	2 cut(s)	99, 191
ArsI	GACNNNNNNTTYG	4 cut(s)	618, 650, 680, 712
AspLEI	GCGC	3 cut(s)	232, 607, 616
AspS9I	GGNCC	5 cut(s)	35, 130, 584, 734, 740
AsuC2I	CCSGG	3 cut(s)	26, 68, 393
AsuHPI	GGTGA	2 cut(s)	187, 343
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	3 cut(s)	35, 584, 740
BanII	GRGCYC	3 cut(s)	23, 128, 170
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	49, 285
BccI	CCATC	1 cut(s)	676
BceAI	ACGGC	1 cut(s)	327
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 344, 378
BciT130I	CCWGG	2 cut(s)	479, 738
BcnI	CCSGG	3 cut(s)	26, 68, 393
BcoDI	GTCTC	3 cut(s)	242, 651, 732
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	8 cut(s)	5, 30, 63, 211, 214, 299, 411, 450
BlsI	GCNGC	8 cut(s)	6, 31, 64, 212, 215, 300, 412, 451
Bme1390I	CCNGG	5 cut(s)	26, 68, 393, 479, 738
Bme18I	GGWCC	3 cut(s)	35, 584, 740
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	5 cut(s)	35, 130, 584, 734, 740
BmiI	GGNNCC	3 cut(s)	132, 167, 735
BmrFI	CCNGG	5 cut(s)	26, 68, 393, 479, 738
BmsI	GCATC	1 cut(s)	279
BoxI	GACNNNNGTC	1 cut(s)	589
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	536, 675
BpuMI	CCSGG	3 cut(s)	26, 68, 393
BsaHI	GRCGYC	3 cut(s)	86, 314, 575
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	4 cut(s)	24, 66, 392, 478
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 32, 51, 310, 398, 698
Bse118I	RCCGGY	2 cut(s)	216, 440
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	479, 738
BseDI	CCNNGG	4 cut(s)	24, 66, 392, 478
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	6 cut(s)	28, 32, 51, 310, 398, 698
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	5 cut(s)	64, 162, 165, 168, 171
BseXI	GCAGC	2 cut(s)	49, 285
Bsh1236I	CGCG	4 cut(s)	122, 413, 449, 662
BshFI	GGCC	5 cut(s)	71, 113, 131, 477, 736
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	6 cut(s)	26, 68, 83, 217, 392, 441
BslI	CCNNNNNNNGG	6 cut(s)	28, 32, 51, 310, 398, 698
BsmAI	GTCTC	3 cut(s)	242, 651, 732
BsmBI	CGTCTC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	5 cut(s)	71, 113, 131, 477, 736
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	23, 128, 170
Bsp143I	GATC	2 cut(s)	249, 359
BspANI	GGCC	5 cut(s)	71, 113, 131, 477, 736
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	4 cut(s)	122, 413, 449, 662
BspLI	GGNNCC	3 cut(s)	132, 167, 735
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	2 cut(s)	216, 440
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	2 cut(s)	216, 440
BssECI	CCNNGG	4 cut(s)	24, 66, 392, 478
BssMI	GATC	2 cut(s)	249, 359
BssNI	GRCGYC	3 cut(s)	86, 314, 575
Bst2UI	CCWGG	2 cut(s)	479, 738
Bst4CI	ACNGT	2 cut(s)	206, 267
Bst6I	CTCTTC	2 cut(s)	97, 491
BstACI	GRCGYC	3 cut(s)	86, 314, 575
BstC8I	GCNNGC	6 cut(s)	53, 124, 218, 415, 618, 622
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	4 cut(s)	122, 413, 449, 662
BstHHI	GCGC	3 cut(s)	232, 607, 616
BstKTI	GATC	2 cut(s)	252, 362
BstMAI	GTCTC	3 cut(s)	242, 651, 732
BstMBI	GATC	2 cut(s)	249, 359
BstNI	CCWGG	2 cut(s)	479, 738
BstNSI	RCATGY	2 cut(s)	516, 727
BstPAI	GACNNNNGTC	1 cut(s)	589
BstSCI	CCNGG	5 cut(s)	24, 66, 391, 477, 736
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	4 cut(s)	122, 413, 449, 662
BstV1I	GCAGC	2 cut(s)	49, 285
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	5 cut(s)	71, 113, 131, 477, 736
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	6 cut(s)	53, 124, 218, 415, 618, 622
CfoI	GCGC	3 cut(s)	232, 607, 616
Cfr10I	RCCGGY	2 cut(s)	216, 440
Cfr13I	GGNCC	5 cut(s)	35, 130, 584, 734, 740
CseI	GACGC	4 cut(s)	75, 303, 583, 668
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	513, 676, 724
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	2 cut(s)	251, 361
DpnII	GATC	2 cut(s)	249, 359
Eam1104I	CTCTTC	2 cut(s)	97, 491
EarI	CTCTTC	2 cut(s)	97, 491
EciI	GGCGGA	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	3 cut(s)	23, 128, 170
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	3 cut(s)	35, 584, 740
Eco53kI	GAGCTC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	477, 736
EcoT38I	GRGCYC	3 cut(s)	23, 128, 170
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	3 cut(s)	516, 679, 727
FaiI	YATR	5 cut(s)	514, 677, 707, 725, 758
FatI	CATG	3 cut(s)	512, 675, 723
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	8 cut(s)	5, 30, 63, 211, 214, 299, 411, 450
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	3 cut(s)	23, 128, 170
Fsp4HI	GCNGC	8 cut(s)	5, 30, 63, 211, 214, 299, 411, 450
GlaI	GCGC	3 cut(s)	231, 606, 615
GluI	GCNGC	8 cut(s)	5, 30, 63, 211, 214, 299, 411, 450
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	71, 113, 131, 477, 736
HapII	CCGG	6 cut(s)	26, 68, 83, 217, 392, 441
HgaI	GACGC	4 cut(s)	75, 303, 583, 668
HhaI	GCGC	3 cut(s)	232, 607, 616
Hin1I	GRCGYC	3 cut(s)	86, 314, 575
Hin1II	CATG	3 cut(s)	516, 679, 727
Hin6I	GCGC	3 cut(s)	230, 605, 614
HinP1I	GCGC	3 cut(s)	230, 605, 614
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	4 cut(s)	277, 283, 342, 402
HpaII	CCGG	6 cut(s)	26, 68, 83, 217, 392, 441
HphI	GGTGA	2 cut(s)	187, 343
Hpy166II	GTNNAC	3 cut(s)	270, 489, 594
Hpy188I	TCNGA	9 cut(s)	18, 105, 165, 225, 282, 288, 341, 407, 523
Hpy188III	TCNNGA	2 cut(s)	96, 399
Hpy8I	GTNNAC	3 cut(s)	270, 489, 594
Hpy99I	CGWCG	5 cut(s)	139, 210, 250, 277, 319
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	2 cut(s)	206, 267
HpyCH4V	TGCA	3 cut(s)	365, 620, 639
HpyF3I	CTNAG	1 cut(s)	406
Hsp92I	GRCGYC	3 cut(s)	86, 314, 575
Hsp92II	CATG	3 cut(s)	516, 679, 727
HspAI	GCGC	3 cut(s)	230, 605, 614
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	249, 359
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	49, 285
LweI	GCATC	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	142, 421, 469
MalI	GATC	2 cut(s)	251, 361
MboI	GATC	2 cut(s)	249, 359
MboII	GAAGA	2 cut(s)	84, 508
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	3 cut(s)	23, 128, 170
MluCI	AATT	4 cut(s)	99, 191, 507, 600
MlyI	GAGTC	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	680
MspI	CCGG	6 cut(s)	26, 68, 83, 217, 392, 441
MspR9I	CCNGG	5 cut(s)	26, 68, 393, 479, 738
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	2 cut(s)	479, 738
MvnI	CGCG	4 cut(s)	122, 413, 449, 662
NaeI	GCCGGC	1 cut(s)	218
NciI	CCSGG	3 cut(s)	26, 68, 393
NdeII	GATC	2 cut(s)	249, 359
NgoMIV	GCCGGC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	516, 679, 727
NlaIV	GGNNCC	3 cut(s)	132, 167, 735
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	2 cut(s)	516, 727
PciI	ACATGT	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	3 cut(s)	101, 134, 278
PctI	GAATGC	1 cut(s)	639
PdiI	GCCGGC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	283, 342, 402
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	8 cut(s)	6, 31, 64, 212, 215, 300, 412, 451
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	723
PshAI	GACNNNNGTC	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	477, 736
PspGI	CCWGG	2 cut(s)	477, 736
PspN4I	GGNNCC	3 cut(s)	132, 167, 735
PspPI	GGNCC	5 cut(s)	35, 130, 584, 734, 740
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	680
SacI	GAGCTC	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	592
SatI	GCNGC	8 cut(s)	5, 30, 63, 211, 214, 299, 411, 450
Sau3AI	GATC	2 cut(s)	249, 359
Sau96I	GGNCC	5 cut(s)	35, 130, 584, 734, 740
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	5 cut(s)	26, 68, 393, 479, 738
SduI	GDGCHC	3 cut(s)	23, 128, 170
SetI	ASST	7 cut(s)	53, 128, 370, 379, 423, 431, 599
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	35, 584, 740
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	551, 654
SmoI	CTYRAG	2 cut(s)	551, 654
Sse9I	AATT	4 cut(s)	99, 191, 507, 600
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	5 cut(s)	24, 66, 391, 477, 736
TaaI	ACNGT	2 cut(s)	206, 267
TaqI	TCGA	5 cut(s)	95, 116, 260, 370, 593
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	4 cut(s)	99, 191, 507, 600
TauI	GCSGC	6 cut(s)	7, 32, 213, 216, 413, 452
TfiI	GAWTC	3 cut(s)	283, 342, 402
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	62, 298
Tsp45I	GTSAC	1 cut(s)	469
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	3 cut(s)	35, 584, 740
XapI	RAATTY	2 cut(s)	99, 191
XceI	RCATGY	2 cut(s)	516, 727
XmiI	GTMKAC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.