Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Reverse (-)

22035498 .. 22037164

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCGGAGCCCTCTTCTCCCAGCTCTCCGACGACGTCGTTCTCAAGATTCTCTTCAAGCTCGAAGAGGACCCGCGGAACTGGGCCAGGCTCGCCTGCTCTTGCACCAAGTTCTCGTCTTTGATTCGCAACGTTTGCTGTAAGACCAAGTGCTCCAAAGCTATCCCTTCAGTCGTTTCTGATCTCCTCTCTGGCTCATCTGCGCCACCGGGCGGTTGGGCCGCGCTTCACAAGCTCGCCGTGTGCTGCCCCGGTCTCCTCCACTCCGGTGTTCTCTTTGAGAACTCCGATTTCGGCCTCGAACGCGAGGTTGGCCCCGATGAGAATTATCGGAGATTGGATTCGTCTCCGGCCGCCAAGCCCCAAACCGAGCCTTCCTCGAGCCAAATTGGTGCGAATCATGAAGTGGGTGCTTCAGGGCCTAATTGTTCTTGGTCTCTCTTCGATGATCTTTATTTCGATACGGTGTATGATGATTCTGAAGCCCAAGTAGAAGCAGCACAGGATCAGGCTAGTGTTGAGAAAGGTGGTGTTAGAGTGGGCGGTGAATTTTCTAGATGTAAGAAGAGGAAGGTTTGTAGGTCGATGAGGTCGCATTCAGCTTCTGGGGTTTGGAATTTGAGCCGTGAACAGGGCAATAAGCTTCTTCACAGTCGGTTCCGTGGTGATTGCTTATACATATGTGATTGGCCTTTCTGTGTTCACATCGAAGAGAAGCGGAATTACATGCTTTTCAGAGGGATTTTCAAGGATTTCAAGGGGTCTCAAGTGTGGAGGACCATAAGGGATGGGAATAGGAGCAAGATTGATCTGAATTGTGCGTTTTGCTCCTGTAAAGAAACTTGGGATTTGCATTCTGCCTTCTGTTTGAGGCGGGTTTTCGGTTACCATGACGATGGTGAGCCGGTTGTTCGAGCTTATGTCTGTGAAAATGGGCATGTCTCAGGGGCTTGGACTGACTTGCCATTGTACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

326

Amino Acids

36.21

Weight (kDa)

7.06

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccII	CGCG	3 cut(s)	76, 224, 306
AciI	CCGC	8 cut(s)	74, 76, 213, 222, 354, 543, 718, 874
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	3, 351
AcsI	RAATTY	2 cut(s)	548, 616
AcuI	CTGAAG	3 cut(s)	153, 399, 501
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	212, 631
AgsI	TTSAA	3 cut(s)	58, 748, 757
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	7 cut(s)	25, 61, 161, 235, 602, 643, 917
AluI	AGCT	7 cut(s)	25, 61, 161, 235, 602, 643, 917
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	5 cut(s)	260, 351, 441, 768, 946
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	8 cut(s)	3, 84, 219, 295, 313, 351, 419, 689
ApeKI	GCWGC	2 cut(s)	246, 497
ApoI	RAATTY	2 cut(s)	548, 616
AspLEI	GCGC	2 cut(s)	205, 226
AspS9I	GGNCC	6 cut(s)	70, 84, 219, 314, 419, 777
AsuC2I	CCSGG	2 cut(s)	210, 252
AsuHPI	GGTGA	3 cut(s)	557, 677, 911
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	70, 777
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	233, 509
BccI	CCATC	2 cut(s)	782, 890
BceAI	ACGGC	2 cut(s)	224, 609
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	210, 252
BcoDI	GTCTC	5 cut(s)	260, 351, 441, 768, 946
BfaI	CTAG	2 cut(s)	513, 555
BisI	GCNGC	4 cut(s)	222, 247, 354, 498
BlsI	GCNGC	4 cut(s)	223, 248, 355, 499
Bme1390I	CCNGG	3 cut(s)	88, 210, 252
Bme18I	GGWCC	2 cut(s)	70, 777
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	6 cut(s)	70, 84, 219, 314, 419, 777
BmiI	GGNNCC	4 cut(s)	10, 72, 316, 659
BmrFI	CCNGG	3 cut(s)	88, 210, 252
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpuEI	CTTGAG	2 cut(s)	29, 750
BpuMI	CCSGG	2 cut(s)	210, 252
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	3 cut(s)	260, 441, 768
BsaJI	CCNNGG	3 cut(s)	74, 250, 661
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 631
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	74, 250, 661
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	212, 631
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	176, 248
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	233, 509
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	3 cut(s)	76, 224, 306
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	8 cut(s)	5, 86, 221, 297, 315, 353, 421, 691
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	6 cut(s)	6, 209, 252, 267, 350, 905
BslI	CCNNNNNNNGG	2 cut(s)	212, 631
BsmAI	GTCTC	5 cut(s)	260, 351, 441, 768, 946
BsmBI	CGTCTC	1 cut(s)	351
BsmI	GAATGC	2 cut(s)	595, 853
BsnI	GGCC	8 cut(s)	5, 86, 221, 297, 315, 353, 421, 691
Bso31I	GGTCTC	3 cut(s)	260, 441, 768
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	13, 155
Bsp143I	GATC	4 cut(s)	181, 448, 505, 808
BspACI	CCGC	8 cut(s)	74, 76, 213, 222, 354, 543, 718, 874
BspANI	GGCC	8 cut(s)	5, 86, 221, 297, 315, 353, 421, 691
BspCNI	CTCAG	1 cut(s)	956
BspFNI	CGCG	3 cut(s)	76, 224, 306
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	4 cut(s)	10, 72, 316, 659
BspPI	GGATC	1 cut(s)	513
BspTNI	GGTCTC	3 cut(s)	260, 441, 768
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	3 cut(s)	74, 250, 661
BssMI	GATC	4 cut(s)	181, 448, 505, 808
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	466, 653
Bst6I	CTCTTC	6 cut(s)	20, 59, 60, 446, 560, 705
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	93, 97, 237
BstDEI	CTNAG	1 cut(s)	943
BstDSI	CCRYGG	2 cut(s)	74, 661
BstEII	GGTNACC	1 cut(s)	884
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	3 cut(s)	76, 224, 306
BstHHI	GCGC	2 cut(s)	205, 226
BstKTI	GATC	4 cut(s)	184, 451, 508, 811
BstMAI	GTCTC	5 cut(s)	260, 351, 441, 768, 946
BstMBI	GATC	4 cut(s)	181, 448, 505, 808
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 135, 232, 303, 312
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	2 cut(s)	730, 941
BstPI	GGTNACC	1 cut(s)	884
BstSCI	CCNGG	3 cut(s)	86, 208, 250
BstUI	CGCG	3 cut(s)	76, 224, 306
BstV1I	GCAGC	2 cut(s)	233, 509
BstXI	CCANNNNNNTGG	1 cut(s)	896
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	8 cut(s)	5, 86, 221, 297, 315, 353, 421, 691
BtgI	CCRYGG	2 cut(s)	74, 661
BtsCI	GGATG	1 cut(s)	793
Cac8I	GCNNGC	3 cut(s)	93, 97, 237
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	205, 226
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	6 cut(s)	70, 84, 219, 314, 419, 777
Cfr42I	CCGCGG	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	4 cut(s)	401, 727, 890, 938
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	1 cut(s)	943
DpnI	GATC	4 cut(s)	183, 450, 507, 810
DpnII	GATC	4 cut(s)	181, 448, 505, 808
EaeI	YGGCCR	2 cut(s)	3, 351
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	6 cut(s)	20, 59, 60, 446, 560, 705
EarI	CTCTTC	6 cut(s)	20, 59, 60, 446, 560, 705
EclXI	CGGCCG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	3 cut(s)	260, 441, 768
Eco47I	GGWCC	2 cut(s)	70, 777
Eco52I	CGGCCG	1 cut(s)	351
Eco57I	CTGAAG	3 cut(s)	153, 399, 501
Eco88I	CYCGRG	1 cut(s)	379
Eco91I	GGTNACC	1 cut(s)	884
EcoO109I	RGGNCCY	2 cut(s)	70, 419
EcoO65I	GGTNACC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	4 cut(s)	404, 730, 893, 941
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	4 cut(s)	400, 726, 889, 937
FauI	CCCGC	2 cut(s)	81, 867
FauNDI	CATATG	1 cut(s)	680
Fnu4HI	GCNGC	4 cut(s)	222, 247, 354, 498
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	222, 247, 354, 498
FspBI	CTAG	2 cut(s)	513, 555
GlaI	GCGC	2 cut(s)	204, 225
GluI	GCNGC	4 cut(s)	222, 247, 354, 498
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	8 cut(s)	5, 86, 221, 297, 315, 353, 421, 691
HapII	CCGG	6 cut(s)	6, 209, 252, 267, 350, 905
HhaI	GCGC	2 cut(s)	205, 226
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	404, 730, 893, 941
Hin6I	GCGC	2 cut(s)	203, 224
HinP1I	GCGC	2 cut(s)	203, 224
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	5 cut(s)	49, 124, 341, 397, 476
HpaII	CCGG	6 cut(s)	6, 209, 252, 267, 350, 905
HphI	GGTGA	3 cut(s)	557, 677, 911
Hpy166II	GTNNAC	2 cut(s)	629, 703
Hpy188I	TCNGA	7 cut(s)	31, 181, 289, 333, 481, 737, 813
Hpy188III	TCNNGA	3 cut(s)	46, 401, 555
Hpy8I	GTNNAC	2 cut(s)	629, 703
Hpy99I	CGWCG	3 cut(s)	35, 38, 41
HpyAV	CCTTC	4 cut(s)	177, 384, 565, 871
HpyCH4III	ACNGT	2 cut(s)	466, 653
HpyCH4IV	ACGT	2 cut(s)	36, 132
HpyCH4V	TGCA	2 cut(s)	105, 853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 135, 232, 303, 312
HpyF3I	CTNAG	1 cut(s)	943
HpySE526I	ACGT	2 cut(s)	36, 132
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	404, 730, 893, 941
HspAI	GCGC	2 cut(s)	203, 224
KspI	CCGCGG	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	181, 448, 505, 808
LmnI	GCTCC	4 cut(s)	8, 158, 798, 833
Lsp1109I	GCAGC	2 cut(s)	233, 509
MaeI	CTAG	2 cut(s)	513, 555
MaeII	ACGT	2 cut(s)	36, 132
MaeIII	GTNAC	1 cut(s)	884
MalI	GATC	4 cut(s)	183, 450, 507, 810
MboI	GATC	4 cut(s)	181, 448, 505, 808
MboII	GAAGA	7 cut(s)	7, 46, 77, 433, 577, 638, 722
MhlI	GDGCHC	2 cut(s)	13, 155
MluCI	AATT	7 cut(s)	325, 387, 424, 548, 616, 721, 814
MmeI	TCCRAC	1 cut(s)	54
MseI	TTAA	1 cut(s)	976
MslI	CAYNNNNRTG	2 cut(s)	267, 894
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	6 cut(s)	6, 209, 252, 267, 350, 905
MspR9I	CCNGG	3 cut(s)	88, 210, 252
Mva1269I	GAATGC	2 cut(s)	595, 853
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	3 cut(s)	76, 224, 306
MwoI	GCNNNNNNNGC	5 cut(s)	92, 135, 232, 303, 312
NciI	CCSGG	2 cut(s)	210, 252
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	4 cut(s)	181, 448, 505, 808
NlaIII	CATG	4 cut(s)	404, 730, 893, 941
NlaIV	GGNNCC	4 cut(s)	10, 72, 316, 659
NspI	RCATGY	2 cut(s)	730, 941
OliI	CACNNNNGTG	1 cut(s)	267
PaeR7I	CTCGAG	1 cut(s)	379
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	2 cut(s)	595, 853
PfeI	GAWTC	5 cut(s)	49, 124, 341, 397, 476
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	223, 248, 355, 499
PpuMI	RGGWCCY	1 cut(s)	70
Psp1406I	AACGTT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	884
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	4 cut(s)	10, 72, 316, 659
PspPI	GGNCC	6 cut(s)	70, 84, 219, 314, 419, 777
PspPPI	RGGWCCY	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	605
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	2 cut(s)	267, 894
SacII	CCGCGG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	976
SatI	GCNGC	4 cut(s)	222, 247, 354, 498
Sau3AI	GATC	4 cut(s)	181, 448, 505, 808
Sau96I	GGNCC	6 cut(s)	70, 84, 219, 314, 419, 777
ScrFI	CCNGG	3 cut(s)	88, 210, 252
SduI	GDGCHC	2 cut(s)	13, 155
Sfr274I	CTCGAG	1 cut(s)	379
Sfr303I	CCGCGG	1 cut(s)	77
SgrBI	CCGCGG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	70, 777
SlaI	CTCGAG	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	267, 894
SmlI	CTYRAG	3 cut(s)	44, 379, 765
SmoI	CTYRAG	3 cut(s)	44, 379, 765
Sse9I	AATT	7 cut(s)	325, 387, 424, 548, 616, 721, 814
SsiI	CCGC	8 cut(s)	74, 76, 213, 222, 354, 543, 718, 874
SspMI	CTAG	2 cut(s)	513, 555
StyD4I	CCNGG	3 cut(s)	86, 208, 250
TaaI	ACNGT	2 cut(s)	466, 653
TaiI	ACGT	2 cut(s)	39, 135
TaqI	TCGA	8 cut(s)	63, 300, 380, 444, 459, 584, 708, 913
TasI	AATT	7 cut(s)	325, 387, 424, 548, 616, 721, 814
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	2 cut(s)	224, 356
TfiI	GAWTC	5 cut(s)	49, 124, 341, 397, 476
Tru1I	TTAA	1 cut(s)	976
Tru9I	TTAA	1 cut(s)	976
TseI	GCWGC	2 cut(s)	246, 497
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	650
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	70, 777
XapI	RAATTY	2 cut(s)	548, 616
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	2 cut(s)	730, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XhoI	CTCGAG	1 cut(s)	379
XspI	CTAG	2 cut(s)	513, 555
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.