MD11G1310800.v1.1

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
42359262 .. 42360364
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1310800.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCCGGAACTCTCTTCTCGAAGCTCTCCGACGACGTCGTTGTGAACATCCTCTTCAAGCTCGAGGAGGACCCGCGGAACTGGGCTCGGCTCGCCTGCTCCTGCACCAAGTTCTCCTCCATGATCCGAAACGTCTGCTGGAAGACCAAGTGCTACAAGGTCATTCCTTCCGTCGTCTCCGATCTCCTTGCCGGCTCCTCCGAGCCTCCCGGCGGCTGGGCCGCTCTTCACAAGCTCGCTGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTCCTCTTCGAGAACTCCGACTTTGGGCTCGAGCGCGAGCTCGGTCCCGACGAGGATTACCGGAGATTGGACTCCAGTCCGCTCGGCGTATCTCCGGCGGCGAAGCCTCCGACCGAGGCGTCCTCGAGCCAAATTGGCGCGAATCAGGAGGGTGGTTCCTCTGGAAATGATTGTTCTTGGTCTCTGTTCGATGATCTTTATTTCGATACAGTCTATAACGATTCTGAAGCCCATGATCAAGAGCAAGACAATTCCCAATTAGAATCAGCGGCGACGGAGGCGGCGGAGGATCAAGTCTCCGTCGATGTCGATAATGGCTCCGTTCGAGTGGGCAGCGAATTTTCGATTTGCAAGAAAAGGAAGGTGTGCAGACCGATGAGGTCGCATTTGGCTTCTGGGGTTTGGAATCTGAGCCGTGAGCAGGGCAACAAGCTTCTCCACAGCCGGTTCCGCGGCGACCGCTTGTACATTTGTGATTGGCCCGGCTGCGTGCACATCGAAGAGAAGCGAAATTACATGCTTTTCAGAGGGATTTTCAAGGATTTCAAGGGGTCCCAAGTGTGGAGGACGATCAAGGATGGGAACCGCAGCAAGATTGATCTGAATTGCGCGTTTTGCACCTGCAAAGACACTTGGGATTTGCATTCTGCATTCTGCTTGAGGCGGGTTTTCGGGTACCATGACGATGGCGAGCCGGTTGTTCGAGCTTATGTCTGTGAAAATGGACATGTCTCTGGGGCTTGGACCGACCTGCCATTGTACTCTTGA

Protein Analysis

346

Amino Acids

38.48

Weight (kDa)

5.54

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
AasI GACNNNNNNGTC 1 cut(s) 388
AatII GACGTC 1 cut(s) 39
Acc36I ACCTGC 2 cut(s) 899, 1029
Acc65I GGTACC 1 cut(s) 945
AccB1I GGYRCC 1 cut(s) 945
AccBSI CCGCTC 2 cut(s) 224, 352
AccII CGCG 5 cut(s) 76, 306, 410, 723, 881
AclWI GGATC 2 cut(s) 118, 567
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 3 cut(s) 36, 270, 389
AfaI GTAC 3 cut(s) 737, 947, 1031
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 691, 831
AflIII ACRYGT 1 cut(s) 997
AgsI TTSAA 3 cut(s) 58, 808, 817
AluBI AGCT 6 cut(s) 25, 61, 235, 310, 703, 977
AluI AGCT 6 cut(s) 25, 61, 235, 310, 703, 977
Alw21I GWGCWC 2 cut(s) 312, 765
Alw26I GTCTC 4 cut(s) 181, 456, 571, 1006
Alw44I GTGCAC 1 cut(s) 761
AlwI GGATC 2 cut(s) 118, 567
Ama87I CYCGRG 3 cut(s) 62, 299, 394
AoxI GGCC 4 cut(s) 3, 219, 253, 749
ApaLI GTGCAC 1 cut(s) 761
ApeKI GCWGC 4 cut(s) 246, 603, 756, 858
ApoI RAATTY 1 cut(s) 608
Asp718I GGTACC 1 cut(s) 945
AspLEI GCGC 3 cut(s) 306, 410, 881
AspS9I GGNCC 6 cut(s) 70, 219, 314, 750, 822, 1014
AsuC2I CCSGG 3 cut(s) 210, 252, 753
AvaI CYCGRG 3 cut(s) 62, 299, 394
AvaII GGWCC 4 cut(s) 70, 314, 822, 1014
BaeGI GKGCMC 1 cut(s) 765
BanI GGYRCC 1 cut(s) 945
BanII GRGCYC 3 cut(s) 88, 300, 312
BarI GAAGNNNNNNTAC 2 cut(s) 767, 799
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 312, 765
BbvI GCAGC 4 cut(s) 233, 615, 743, 870
BccI CCATC 2 cut(s) 842, 950
BceAI ACGGC 1 cut(s) 669
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 170, 204
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 3 cut(s) 210, 252, 753
BcoDI GTCTC 4 cut(s) 181, 456, 571, 1006
BfuAI ACCTGC 2 cut(s) 899, 1029
BglI GCCNNNNNGGC 1 cut(s) 405
Bme1390I CCNGG 3 cut(s) 210, 252, 753
Bme18I GGWCC 4 cut(s) 70, 314, 822, 1014
BmeT110I CYCGRG 3 cut(s) 62, 299, 394
BmgT120I GGNCC 6 cut(s) 70, 219, 314, 750, 822, 1014
BmrFI CCNGG 3 cut(s) 210, 252, 753
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 949
BpuMI CCSGG 3 cut(s) 210, 252, 753
BsaHI GRCGYC 3 cut(s) 36, 270, 389
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 74, 250, 384, 721
BsaWI WCCGGW 1 cut(s) 330
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 691, 831
Bse118I RCCGGY 3 cut(s) 191, 714, 964
Bse1I ACTGG 2 cut(s) 86, 345
BseDI CCNNGG 4 cut(s) 74, 250, 384, 721
BseGI GGATG 2 cut(s) 48, 853
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 691, 831
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 2 cut(s) 86, 345
BseRI GAGGAG 4 cut(s) 80, 106, 187, 248
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 4 cut(s) 233, 615, 743, 870
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 2 cut(s) 88, 658
Bsh1236I CGCG 5 cut(s) 76, 306, 410, 723, 881
Bsh1285I CGRYCG 2 cut(s) 384, 730
BshFI GGCC 4 cut(s) 5, 221, 255, 751
BshNI GGYRCC 1 cut(s) 945
BsiEI CGRYCG 2 cut(s) 384, 730
BsiHKAI GWGCWC 2 cut(s) 312, 765
BsiHKCI CYCGRG 3 cut(s) 62, 299, 394
BslFI GGGAC 2 cut(s) 300, 808
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 294, 337, 691, 831
BsmAI GTCTC 4 cut(s) 181, 456, 571, 1006
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 300, 808
BsmI GAATGC 2 cut(s) 913, 920
BsnI GGCC 4 cut(s) 5, 221, 255, 751
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 3 cut(s) 62, 299, 394
Bsp1286I GDGCHC 4 cut(s) 88, 300, 312, 765
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
BspANI GGCC 4 cut(s) 5, 221, 255, 751
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 5 cut(s) 76, 306, 410, 723, 881
BspMI ACCTGC 2 cut(s) 899, 1029
BspPI GGATC 2 cut(s) 118, 567
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 945
BspTNI GGTCTC 1 cut(s) 456
BsrBI CCGCTC 2 cut(s) 224, 352
BsrFI RCCGGY 3 cut(s) 191, 714, 964
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 2 cut(s) 86, 345
BssAI RCCGGY 3 cut(s) 191, 714, 964
BssECI CCNNGG 4 cut(s) 74, 250, 384, 721
BssMI GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
BssNI GRCGYC 3 cut(s) 36, 270, 389
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 5 cut(s) 20, 59, 231, 281, 765
BstACI GRCGYC 3 cut(s) 36, 270, 389
BstAUI TGTACA 1 cut(s) 735
BstC8I GCNNGC 7 cut(s) 93, 97, 193, 237, 308, 761, 962
BstDEI CTNAG 1 cut(s) 680
BstDSI CCRYGG 2 cut(s) 74, 721
BstF5I GGATG 2 cut(s) 48, 853
BstFNI CGCG 5 cut(s) 76, 306, 410, 723, 881
BstHHI GCGC 3 cut(s) 306, 410, 881
BstKTI GATC 7 cut(s) 126, 184, 466, 508, 562, 843, 871
BstMAI GTCTC 4 cut(s) 181, 456, 571, 1006
BstMBI GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
BstMCI CGRYCG 2 cut(s) 384, 730
BstMWI GCNNNNNNNGC 7 cut(s) 92, 252, 405, 548, 720, 729, 885
BstNSI RCATGY 2 cut(s) 790, 1001
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 208, 250, 751
BstSLI GKGCMC 1 cut(s) 765
BstUI CGCG 5 cut(s) 76, 306, 410, 723, 881
BstV1I GCAGC 4 cut(s) 233, 615, 743, 870
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 956
BsuRI GGCC 4 cut(s) 5, 221, 255, 751
BtgI CCRYGG 2 cut(s) 74, 721
BtsCI GGATG 2 cut(s) 48, 853
BveI ACCTGC 2 cut(s) 899, 1029
Cac8I GCNNGC 7 cut(s) 93, 97, 193, 237, 308, 761, 962
CfoI GCGC 3 cut(s) 306, 410, 881
Cfr10I RCCGGY 3 cut(s) 191, 714, 964
Cfr13I GGNCC 6 cut(s) 70, 219, 314, 750, 822, 1014
Cfr42I CCGCGG 2 cut(s) 77, 724
CseI GACGC 2 cut(s) 259, 378
Csp6I GTAC 3 cut(s) 736, 946, 1030
CviAII CATG 5 cut(s) 121, 503, 787, 950, 998
CviQI GTAC 3 cut(s) 736, 946, 1030
DdeI CTNAG 1 cut(s) 680
DpnI GATC 7 cut(s) 125, 183, 465, 507, 561, 842, 870
DpnII GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 20, 59, 231, 281, 765
EarI CTCTTC 5 cut(s) 20, 59, 231, 281, 765
EciI GGCGGA 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 3 cut(s) 88, 300, 312
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 4 cut(s) 70, 314, 822, 1014
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 3 cut(s) 62, 299, 394
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 70, 822
EcoT38I GRGCYC 3 cut(s) 88, 300, 312
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 5 cut(s) 124, 506, 790, 953, 1001
FaiI YATR 7 cut(s) 122, 486, 504, 788, 951, 981, 999
FaqI GGGAC 2 cut(s) 300, 808
FatI CATG 5 cut(s) 120, 502, 786, 949, 997
FauI CCCGC 2 cut(s) 81, 927
FbaI TGATCA 1 cut(s) 505
FokI GGATG 2 cut(s) 35, 860
FriOI GRGCYC 3 cut(s) 88, 300, 312
GlaI GCGC 3 cut(s) 305, 409, 880
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 4 cut(s) 5, 221, 255, 751
HgaI GACGC 2 cut(s) 259, 378
HhaI GCGC 3 cut(s) 306, 410, 881
Hin1I GRCGYC 3 cut(s) 36, 270, 389
Hin1II CATG 5 cut(s) 124, 506, 790, 953, 1001
Hin6I GCGC 3 cut(s) 304, 408, 879
HinP1I GCGC 3 cut(s) 304, 408, 879
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 5 cut(s) 341, 412, 491, 533, 676
Hpy166II GTNNAC 2 cut(s) 46, 763
Hpy188III TCNNGA 7 cut(s) 19, 280, 317, 416, 432, 509, 1035
Hpy8I GTNNAC 2 cut(s) 46, 763
Hpy99I CGWCG 7 cut(s) 35, 38, 41, 176, 323, 547, 575
HpyAV CCTTC 2 cut(s) 177, 625
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 2 cut(s) 36, 132
HpyCH4V TGCA 8 cut(s) 105, 621, 639, 763, 888, 894, 913, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 252, 405, 548, 720, 729, 885
HpyF3I CTNAG 1 cut(s) 680
HpySE526I ACGT 2 cut(s) 36, 132
Hsp92I GRCGYC 3 cut(s) 36, 270, 389
Hsp92II CATG 5 cut(s) 124, 506, 790, 953, 1001
HspAI GCGC 3 cut(s) 304, 408, 879
KflI GGGWCCC 1 cut(s) 822
KpnI GGTACC 1 cut(s) 949
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 505
KspI CCGCGG 2 cut(s) 77, 724
Kzo9I GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 3 cut(s) 104, 200, 593
Lsp1109I GCAGC 4 cut(s) 233, 615, 743, 870
MaeII ACGT 2 cut(s) 36, 132
MalI GATC 7 cut(s) 125, 183, 465, 507, 561, 842, 870
MbiI CCGCTC 2 cut(s) 224, 352
MboI GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
MboII GAAGA 6 cut(s) 7, 46, 154, 218, 268, 782
MhlI GDGCHC 4 cut(s) 88, 300, 312, 765
MluCI AATT 6 cut(s) 402, 520, 527, 608, 781, 874
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 3 cut(s) 54, 312, 404
MroNI GCCGGC 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 3 cut(s) 76, 539, 723
MspR9I CCNGG 3 cut(s) 210, 252, 753
Mva1269I GAATGC 2 cut(s) 913, 920
MvnI CGCG 5 cut(s) 76, 306, 410, 723, 881
MwoI GCNNNNNNNGC 7 cut(s) 92, 252, 405, 548, 720, 729, 885
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 3 cut(s) 210, 252, 753
NdeII GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 5 cut(s) 124, 506, 790, 953, 1001
NmeAIII GCCGAG 2 cut(s) 67, 333
NspI RCATGY 2 cut(s) 790, 1001
PaeR7I CTCGAG 3 cut(s) 62, 299, 394
PaqCI CACCTGC 1 cut(s) 899
PciI ACATGT 1 cut(s) 997
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 318
PctI GAATGC 2 cut(s) 913, 920
PdiI GCCGGC 1 cut(s) 193
PfeI GAWTC 4 cut(s) 412, 491, 533, 676
PflFI GACNNNGTC 1 cut(s) 35
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 2 cut(s) 70, 822
PscI ACATGT 1 cut(s) 997
PshAI GACNNNNGTC 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 2 cut(s) 70, 822
PspFI CCCAGC 1 cut(s) 216
PspPI GGNCC 6 cut(s) 70, 219, 314, 750, 822, 1014
PspPPI RGGWCCY 2 cut(s) 70, 822
PspXI VCTCGAGB 3 cut(s) 62, 299, 394
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 3 cut(s) 737, 947, 1031
RsaNI GTAC 3 cut(s) 736, 946, 1030
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 2 cut(s) 77, 724
SapI GCTCTTC 1 cut(s) 231
Sau3AI GATC 7 cut(s) 123, 181, 463, 505, 559, 840, 868
Sau96I GGNCC 6 cut(s) 70, 219, 314, 750, 822, 1014
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 210, 252, 753
SduI GDGCHC 4 cut(s) 88, 300, 312, 765
Sfr274I CTCGAG 3 cut(s) 62, 299, 394
Sfr303I CCGCGG 2 cut(s) 77, 724
SgrBI CCGCGG 2 cut(s) 77, 724
SinI GGWCC 4 cut(s) 70, 314, 822, 1014
SlaI CTCGAG 3 cut(s) 62, 299, 394
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 4 cut(s) 62, 299, 394, 928
SmoI CTYRAG 4 cut(s) 62, 299, 394, 928
Sse9I AATT 6 cut(s) 402, 520, 527, 608, 781, 874
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 208, 250, 751
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 2 cut(s) 39, 135
TaqII GACCGA 4 cut(s) 302, 398, 658, 1031
TasI AATT 6 cut(s) 402, 520, 527, 608, 781, 874
TatI WGTACW 2 cut(s) 735, 1029
TauI GCSGC 6 cut(s) 216, 224, 371, 542, 554, 726
TfiI GAWTC 4 cut(s) 412, 491, 533, 676
TseI GCWGC 4 cut(s) 246, 603, 756, 858
TspGWI ACGGA 4 cut(s) 160, 559, 560, 580
Tth111I GACNNNGTC 1 cut(s) 35
VneI GTGCAC 1 cut(s) 761
VpaK11BI GGWCC 4 cut(s) 70, 314, 822, 1014
XapI RAATTY 1 cut(s) 608
XceI RCATGY 2 cut(s) 790, 1001
XhoI CTCGAG 3 cut(s) 62, 299, 394
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.