Rh6BG358900

Phytochrome A-associated F-box

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
58843899 .. 58845071
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG358900.1

Sequence Viewer

Length: 978 bp
ATGAATTCCGACTCCGTGTTCTCGACGCTTCCGGACGACGTCGTTCTGAACTTGTTCTCCAAGCTGGAGGACGACCCTCGCAACTGGGCCCGCCTCGCCTGCGCCTGCACAAAATTCGCCTCCCTCATTCGCAACGTCTGCTGGAAGACCAAGTGCCGCAACGTCCTCCCCTCCGATCTCGTCTCCGCCGCCTCCTCCTCCGAGCCCCCCGGCGGCTGGTCCTCCCTCCACAAGCTGGCCGTCTGCTGCCCCGGCCTCCTCCACTCCGGCGTCCTCTTCGAGAATTCCGATTTCGGCCTCGAACGCGAGCTCGGCCCCGACGAAAGTTACCGCCCCCAATCCCAATCGGAGCCCTCCTCCTCCTCCAGCCAAATTCACCATCCAACGCCGTCTCCGCCGCCGCCGGCTTCCGATTGCGCTTGGTCTCTCTACGACGATCTCTATTTCGATACGGTTTACGACGAGTCCGAATCGGATGCTGCTGTTGCTGCCCCCGAGAACGAGAACGAGAACGAGAACGAGAACGGCGGCGTTTCAGTGGGAGGTGAGTTTCGAATTCAAAAAAGGCGAAAGATCTGCAGGTCGATGAGGTCGCATCTGGCTTCCGGGGTGTGGAATCTGAGCCGCGAGCAAGGCAACAAGCTTCTCCACAGCCGGTTTCGCGGCGATTGCCTCTACATCTGTGACTGGCCTGGGTGTGTTCACATCGAAGAGAAGCGGAATTACATGCTTTTCAGAGGGGTTTTCAAGGACTTCAAAGGCTCTCAAGTGTGGAGGAACATCAAGGATGCCAAGAGGACCAAAGTCGACCTCAATTGCGCCTACTGCGCCTGCAAGCAGACTTGGGATTTGCATTCCGCCTTCTGCTTGAGACGCGGTTTCGGCTACCATGACGATGGCGAACCCGTTGTCAGGGCTTATGTGTGCGACAATGGACATGTCTCCGGGGCCTGGACCGACTTGCCATTGTATGCCTAG

Protein Analysis

325

Amino Acids

36.43

Weight (kDa)

5.82

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 53 1.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 570
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 807
AccII CGCG 4 cut(s) 306, 627, 663, 876
AccIII TCCGGA 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 5 cut(s) 4, 113, 283, 372, 555
AcyI GRCGYC 2 cut(s) 39, 270
AfiI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 612, 912, 951
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 3 cut(s) 560, 748, 757
AjnI CCWGG 2 cut(s) 691, 950
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 64, 235, 310, 643
AluI AGCT 4 cut(s) 64, 235, 310, 643
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 5 cut(s) 187, 396, 429, 865, 946
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 7 cut(s) 87, 237, 253, 295, 313, 689, 948
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 246, 479, 488
ApoI RAATTY 5 cut(s) 4, 113, 283, 372, 555
ArsI GACNNNNNNTTYG 4 cut(s) 832, 864, 894, 926
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 104, 419, 821, 830
AspS9I GGNCC 7 cut(s) 87, 88, 219, 314, 798, 948, 954
AsuC2I CCSGG 4 cut(s) 210, 252, 607, 946
AsuHPI GGTGA 2 cut(s) 368, 557
AsuII TTCGAA 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 3 cut(s) 219, 798, 954
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 4 cut(s) 91, 207, 312, 354
BarI GAAGNNNNNNTAC 2 cut(s) 707, 739
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 233, 466, 475
BccI CCATC 2 cut(s) 387, 890
BceAI ACGGC 3 cut(s) 224, 373, 541
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 458, 492, 558, 592
BciT130I CCWGG 2 cut(s) 693, 952
BcnI CCSGG 4 cut(s) 210, 252, 607, 946
BcoDI GTCTC 5 cut(s) 187, 396, 429, 865, 946
BfaI CTAG 1 cut(s) 976
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 573
Bme1390I CCNGG 6 cut(s) 210, 252, 607, 693, 946, 952
Bme18I GGWCC 3 cut(s) 219, 798, 954
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 7 cut(s) 87, 88, 219, 314, 798, 948, 954
BmiI GGNNCC 4 cut(s) 89, 316, 351, 949
BmrFI CCNGG 6 cut(s) 210, 252, 607, 693, 946, 952
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 466, 604, 778
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 2 cut(s) 86, 349
Bpu14I TTCGAA 1 cut(s) 553
BpuEI CTTGAG 2 cut(s) 750, 889
BpuMI CCSGG 4 cut(s) 210, 252, 607, 946
BsaHI GRCGYC 2 cut(s) 39, 270
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 5 cut(s) 208, 250, 606, 692, 945
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 376, 406
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 216, 235, 612, 912, 951
Bse118I RCCGGY 2 cut(s) 403, 654
Bse1I ACTGG 2 cut(s) 89, 692
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 693, 952
BseDI CCNNGG 5 cut(s) 208, 250, 606, 692, 945
BseGI GGATG 3 cut(s) 379, 481, 793
BseLI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 612, 912, 951
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 2 cut(s) 89, 692
BseRI GAGGAG 6 cut(s) 184, 187, 248, 346, 349, 352
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 3 cut(s) 233, 466, 475
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 4 cut(s) 306, 627, 663, 876
BshFI GGCC 7 cut(s) 89, 239, 255, 297, 315, 691, 950
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 8 cut(s) 32, 210, 252, 267, 404, 606, 655, 945
BslI CCNNNNNNNGG 6 cut(s) 212, 216, 235, 612, 912, 951
BsmAI GTCTC 5 cut(s) 187, 396, 429, 865, 946
BsmBI CGTCTC 3 cut(s) 187, 396, 865
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 7 cut(s) 89, 239, 255, 297, 315, 691, 950
Bso31I GGTCTC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 553
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 4 cut(s) 91, 207, 312, 354
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 175, 436, 573
BspANI GGCC 7 cut(s) 89, 239, 255, 297, 315, 691, 950
BspCNI CTCAG 1 cut(s) 612
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 4 cut(s) 306, 627, 663, 876
BspLI GGNNCC 4 cut(s) 89, 316, 351, 949
BspMAI CTGCAG 1 cut(s) 581
BspMI ACCTGC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 403, 654
BsrI ACTGG 2 cut(s) 89, 692
BssAI RCCGGY 2 cut(s) 403, 654
BssECI CCNNGG 5 cut(s) 208, 250, 606, 692, 945
BssMI GATC 3 cut(s) 175, 436, 573
BssNI GRCGYC 2 cut(s) 39, 270
Bst2UI CCWGG 2 cut(s) 693, 952
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 2 cut(s) 281, 705
BstACI GRCGYC 2 cut(s) 39, 270
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 405, 629, 832, 836
BstDEI CTNAG 1 cut(s) 620
BstF5I GGATG 3 cut(s) 379, 481, 793
BstFNI CGCG 4 cut(s) 306, 627, 663, 876
BstHHI GCGC 4 cut(s) 104, 419, 821, 830
BstKTI GATC 3 cut(s) 178, 439, 576
BstMAI GTCTC 5 cut(s) 187, 396, 429, 865, 946
BstMBI GATC 3 cut(s) 175, 436, 573
BstNI CCWGG 2 cut(s) 693, 952
BstNSI RCATGY 2 cut(s) 730, 941
BstPAI GACNNNNGTC 1 cut(s) 803
BstSCI CCNGG 6 cut(s) 208, 250, 605, 691, 944, 950
BstSFI CTRYAG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 4 cut(s) 306, 627, 663, 876
BstV1I GCAGC 3 cut(s) 233, 466, 475
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 573
BsuRI GGCC 7 cut(s) 89, 239, 255, 297, 315, 691, 950
BtsCI GGATG 3 cut(s) 379, 481, 793
BtsIMutI CAGTG 1 cut(s) 543
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 9 cut(s) 91, 100, 106, 237, 308, 405, 629, 832, 836
CfoI GCGC 4 cut(s) 104, 419, 821, 830
Cfr10I RCCGGY 2 cut(s) 403, 654
Cfr13I GGNCC 7 cut(s) 87, 88, 219, 314, 798, 948, 954
CseI GACGC 3 cut(s) 34, 259, 882
CviAII CATG 3 cut(s) 727, 890, 938
DdeI CTNAG 1 cut(s) 620
DpnI GATC 3 cut(s) 177, 438, 575
DpnII GATC 3 cut(s) 175, 436, 573
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 281, 705
EarI CTCTTC 2 cut(s) 281, 705
EciI GGCGGA 3 cut(s) 175, 384, 847
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 4 cut(s) 91, 207, 312, 354
Eco31I GGTCTC 1 cut(s) 429
Eco47I GGWCC 3 cut(s) 219, 798, 954
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 948
EcoRI GAATTC 3 cut(s) 4, 283, 555
EcoRII CCWGG 2 cut(s) 691, 950
EcoT38I GRGCYC 4 cut(s) 91, 207, 312, 354
Esp3I CGTCTC 3 cut(s) 187, 396, 865
FaeI CATG 3 cut(s) 730, 893, 941
FaiI YATR 5 cut(s) 728, 891, 921, 939, 972
FatI CATG 3 cut(s) 726, 889, 937
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 807
FokI GGATG 3 cut(s) 366, 488, 800
FriOI GRGCYC 4 cut(s) 91, 207, 312, 354
FspBI CTAG 1 cut(s) 976
GlaI GCGC 4 cut(s) 103, 418, 820, 829
GsuI CTGGAG 2 cut(s) 86, 349
HaeIII GGCC 7 cut(s) 89, 239, 255, 297, 315, 691, 950
HapII CCGG 8 cut(s) 32, 210, 252, 267, 404, 606, 655, 945
HgaI GACGC 3 cut(s) 34, 259, 882
HhaI GCGC 4 cut(s) 104, 419, 821, 830
Hin1I GRCGYC 2 cut(s) 39, 270
Hin1II CATG 3 cut(s) 730, 893, 941
Hin6I GCGC 4 cut(s) 102, 417, 819, 828
HinP1I GCGC 4 cut(s) 102, 417, 819, 828
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 4 cut(s) 11, 464, 470, 616
HpaII CCGG 8 cut(s) 32, 210, 252, 267, 404, 606, 655, 945
HphI GGTGA 2 cut(s) 368, 557
Hpy166II GTNNAC 3 cut(s) 457, 703, 808
Hpy188III TCNNGA 3 cut(s) 22, 32, 280
Hpy8I GTNNAC 3 cut(s) 457, 703, 808
Hpy99I CGWCG 6 cut(s) 28, 41, 44, 323, 437, 464
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 3 cut(s) 39, 135, 162
HpyCH4V TGCA 4 cut(s) 108, 579, 834, 853
HpyF3I CTNAG 1 cut(s) 620
HpySE526I ACGT 3 cut(s) 39, 135, 162
Hsp92I GRCGYC 2 cut(s) 39, 270
Hsp92II CATG 3 cut(s) 730, 893, 941
HspAI GCGC 4 cut(s) 102, 417, 819, 828
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 175, 436, 573
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 3 cut(s) 233, 466, 475
LweI GCATC 3 cut(s) 466, 604, 778
MaeI CTAG 1 cut(s) 976
MaeII ACGT 3 cut(s) 39, 135, 162
MaeIII GTNAC 2 cut(s) 326, 683
MalI GATC 3 cut(s) 177, 438, 575
MboI GATC 3 cut(s) 175, 436, 573
MboII GAAGA 3 cut(s) 157, 268, 722
MfeI CAATTG 1 cut(s) 814
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 4 cut(s) 91, 207, 312, 354
MluCI AATT 7 cut(s) 4, 113, 283, 372, 555, 721, 814
MlyI GAGTC 2 cut(s) 5, 473
MmeI TCCRAC 2 cut(s) 33, 407
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 894
MspI CCGG 8 cut(s) 32, 210, 252, 267, 404, 606, 655, 945
MspR9I CCNGG 6 cut(s) 210, 252, 607, 693, 946, 952
MunI CAATTG 1 cut(s) 814
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 2 cut(s) 693, 952
MvnI CGCG 4 cut(s) 306, 627, 663, 876
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 4 cut(s) 210, 252, 607, 946
NdeII GATC 3 cut(s) 175, 436, 573
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 3 cut(s) 730, 893, 941
NlaIV GGNNCC 4 cut(s) 89, 316, 351, 949
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 683
NspI RCATGY 2 cut(s) 730, 941
NspV TTCGAA 1 cut(s) 553
PciI ACATGT 1 cut(s) 937
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 318, 465
PctI GAATGC 1 cut(s) 853
PdiI GCCGGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 470, 616
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 2 cut(s) 5, 472
PpsI GAGTC 2 cut(s) 5, 472
PscI ACATGT 1 cut(s) 937
PshAI GACNNNNGTC 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 691, 950
PspGI CCWGG 2 cut(s) 691, 950
PspN4I GGNNCC 4 cut(s) 89, 316, 351, 949
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 7 cut(s) 87, 88, 219, 314, 798, 948, 954
PstI CTGCAG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 894
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 806
Sau3AI GATC 3 cut(s) 175, 436, 573
Sau96I GGNCC 7 cut(s) 87, 88, 219, 314, 798, 948, 954
SchI GAGTC 2 cut(s) 5, 473
ScrFI CCNGG 6 cut(s) 210, 252, 607, 693, 946, 952
SduI GDGCHC 4 cut(s) 91, 207, 312, 354
SfaNI GCATC 3 cut(s) 466, 604, 778
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 3 cut(s) 219, 798, 954
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 2 cut(s) 765, 868
SmoI CTYRAG 2 cut(s) 765, 868
Sse9I AATT 7 cut(s) 4, 113, 283, 372, 555, 721, 814
SspMI CTAG 1 cut(s) 976
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 6 cut(s) 208, 250, 605, 691, 944, 950
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 3 cut(s) 42, 138, 165
TaqI TCGA 8 cut(s) 23, 279, 300, 447, 553, 584, 708, 807
TaqII GACCGA 1 cut(s) 971
TasI AATT 7 cut(s) 4, 113, 283, 372, 555, 721, 814
TauI GCSGC 8 cut(s) 159, 191, 216, 400, 403, 531, 627, 666
TfiI GAWTC 2 cut(s) 470, 616
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 3 cut(s) 246, 479, 488
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 219, 798, 954
XapI RAATTY 5 cut(s) 4, 113, 283, 372, 555
XceI RCATGY 2 cut(s) 730, 941
XmiI GTMKAC 1 cut(s) 807
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 976
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.