Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

1382438 .. 1385525

Gene Structure 3088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03115.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATCGGAGATATCTCCCCGCCGGTGACTTCAATCCCAGTTGTTGAAGGGAATGAAGAATTGAGGAAGCCACAGAATCTGATTCCGCCGTTTTCAAAGGTGGTGTCTCATTTTGGCATTAGCGGAATCTCCGTCGCATTGGCCACTGGCGTGACTCATCCTCTCGATGTAGTGAAAGTGAGATTGCAGATGCAGCATGTCGGCCAAAGAGGTCCGTTAATTGGAATGACTGGAATCTTTCTTCAACTGATGAAGAATGAAGGGCGTAGGTCTTTATACTTGGGGTTGACTCCTGCTCTCACTAGATCAGTGCTTTACGGAGGTCTTAGATTGGGATTATATGAACCCACCAAGGTTTCTTTTGATTGGGCATTTGGATCTACCAATGTCTTGGTCAAGATAGCATCAGGCGCATTCGCCGGGGCGTTTTCCACTGCATTAACTAACCCTGTTGAAGTTGTTAAGGTAAGGTTGCAGATGAATCCAAACGCAGTTCCCATTGCAGAAGTGCGGGAAATAGTCTCTAAAGAAGGCATAGGAGCTTTATGGAAAGGAGTTGGTCCTGCCATGGTTAGAGCTGCAGCACTAACTGCCTCACAGCTTGCAACATATGATGAAGCCAAACGGATTCTGGTTAAACGAACTTCTTTAGAAGAAGGGTTTCATCTTCATTTGTGCTCAAGTGTGGTTGCAGGTTTAGTAAGCACACTGATAACCGCACCCATGGACATGATTAAAACCCGCTTGATGTTGCAGCAAGGTTCTGAAAGCACCAAAACCTACAGAAACGGGTTTCATTGCGGTTACAAGGTTGTTCGCAAAGAAGGTCCTCTGGCACTTTACAAAGGAGGCTTTGCAATTTTCGCACGGCTCGGGCCACAAACGATGATCACGTTCATACTATGCGAGAAGCTTAGATCACTCGCTGGACTTCACACAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

314

Amino Acids

33.9

Weight (kDa)

9.87

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	65 - 151	9.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	161 - 245	8.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	253 - 340	8.1e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	683
AciI	CCGC	7 cut(s)	20, 86, 123, 511, 717, 742, 801
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	141, 202
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	33, 47, 96, 245, 455
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	542, 578, 601, 913
AluI	AGCT	4 cut(s)	542, 578, 601, 913
Alw21I	GWGCWC	1 cut(s)	680
Alw26I	GTCTC	2 cut(s)	111, 526
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	3 cut(s)	141, 202, 875
ApeKI	GCWGC	4 cut(s)	193, 578, 581, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	4 cut(s)	212, 560, 827, 875
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	3 cut(s)	212, 560, 827
BalI	TGGCCA	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	4 cut(s)	205, 565, 593, 766
BceAI	ACGGC	2 cut(s)	73, 884
BclI	TGATCA	1 cut(s)	888
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	111, 526
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	579, 781
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	194, 579, 582, 755
BlsI	GCNGC	4 cut(s)	195, 580, 583, 756
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	3 cut(s)	212, 560, 827
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	4 cut(s)	212, 560, 827, 875
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	180, 413
BmuI	ACTGGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	1 cut(s)	421
BsaJI	CCNNGG	4 cut(s)	351, 420, 567, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	38, 151, 235
Bse3DI	GCAATG	2 cut(s)	498, 796
BseDI	CCNNGG	4 cut(s)	351, 420, 567, 723
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	2 cut(s)	498, 796
BseNI	ACTGG	3 cut(s)	38, 151, 235
BseXI	GCAGC	4 cut(s)	205, 565, 593, 766
BshFI	GGCC	3 cut(s)	143, 204, 877
BsiHKAI	GWGCWC	1 cut(s)	680
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	2 cut(s)	23, 420
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	111, 526
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	143, 204, 877
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	5 cut(s)	3, 305, 377, 888, 917
Bsp19I	CCATGG	2 cut(s)	567, 723
BspACI	CCGC	7 cut(s)	20, 86, 123, 511, 717, 742, 801
BspANI	GGCC	3 cut(s)	143, 204, 877
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	498, 796
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	38, 151, 235
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	4 cut(s)	351, 420, 567, 723
BssMI	GATC	5 cut(s)	3, 305, 377, 888, 917
BssT1I	CCWWGG	3 cut(s)	351, 567, 723
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	2 cut(s)	326, 914
BstDSI	CCRYGG	2 cut(s)	567, 723
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	5 cut(s)	6, 308, 380, 891, 920
BstMAI	GTCTC	2 cut(s)	111, 526
BstMBI	GATC	5 cut(s)	3, 305, 377, 888, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 410, 590, 863
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	2 cut(s)	579, 781
BstV1I	GCAGC	4 cut(s)	205, 565, 593, 766
BstX2I	RGATCY	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	143, 204, 877
BtgI	CCRYGG	2 cut(s)	567, 723
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	4 cut(s)	144, 315, 432, 707
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	212, 560, 827, 875
CviAII	CATG	4 cut(s)	197, 568, 724, 730
DdeI	CTNAG	2 cut(s)	326, 914
DpnI	GATC	5 cut(s)	5, 307, 379, 890, 919
DpnII	GATC	5 cut(s)	3, 305, 377, 888, 917
EaeI	YGGCCR	2 cut(s)	141, 202
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	3 cut(s)	351, 567, 723
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	212, 560, 827
Eco88I	CYCGRG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	3 cut(s)	351, 567, 723
ErhI	CCWWGG	3 cut(s)	351, 567, 723
FaeI	CATG	4 cut(s)	200, 571, 727, 733
FatI	CATG	4 cut(s)	196, 567, 723, 729
FauI	CCCGC	3 cut(s)	27, 504, 749
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	888
Fnu4HI	GCNGC	4 cut(s)	194, 579, 582, 755
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	194, 579, 582, 755
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	4 cut(s)	194, 579, 582, 755
HaeIII	GGCC	3 cut(s)	143, 204, 877
HapII	CCGG	2 cut(s)	23, 420
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	200, 571, 727, 733
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	8 cut(s)	76, 82, 126, 154, 234, 289, 481, 628
HpaII	CCGG	2 cut(s)	23, 420
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	8, 81, 766
Hpy188III	TCNNGA	2 cut(s)	164, 397
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	41, 254, 524, 650, 818
HpyCH4IV	ACGT	1 cut(s)	893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 410, 590, 863
HpyF3I	CTNAG	2 cut(s)	326, 914
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	4 cut(s)	200, 571, 727, 733
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	888
Kzo9I	GATC	5 cut(s)	3, 305, 377, 888, 917
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	4 cut(s)	205, 565, 593, 766
LweI	GCATC	2 cut(s)	180, 413
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	3 cut(s)	25, 151, 803
MalI	GATC	5 cut(s)	5, 307, 379, 890, 919
MboI	GATC	5 cut(s)	3, 305, 377, 888, 917
MboII	GAAGA	5 cut(s)	68, 233, 265, 659, 665
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	680
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	59, 219, 858
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	148, 283
MnlI	CCTC	7 cut(s)	57, 171, 203, 314, 604, 840, 842
Mox20I	TGGCCA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	5 cut(s)	218, 440, 462, 636, 735
MslI	CAYNNNNRTG	2 cut(s)	149, 728
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	23, 420
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	193, 410, 590, 863
NciI	CCSGG	1 cut(s)	421
NcoI	CCATGG	2 cut(s)	567, 723
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	5 cut(s)	3, 305, 377, 888, 917
NlaIII	CATG	4 cut(s)	200, 571, 727, 733
NmuCI	GTSAC	2 cut(s)	25, 151
NspI	RCATGY	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PctI	GAATGC	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	6 cut(s)	76, 82, 126, 234, 481, 628
PkrI	GCNGC	4 cut(s)	195, 580, 583, 756
PleI	GAGTC	2 cut(s)	148, 283
PpsI	GAGTC	2 cut(s)	148, 283
PpuMI	RGGWCCY	1 cut(s)	827
Psp5II	RGGWCCY	1 cut(s)	827
PspPI	GGNCC	4 cut(s)	212, 560, 827, 875
PspPPI	RGGWCCY	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	149, 728
SaqAI	TTAA	5 cut(s)	218, 440, 462, 636, 735
SatI	GCNGC	4 cut(s)	194, 579, 582, 755
Sau3AI	GATC	5 cut(s)	3, 305, 377, 888, 917
Sau96I	GGNCC	4 cut(s)	212, 560, 827, 875
SchI	GAGTC	2 cut(s)	148, 283
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	680
SfaNI	GCATC	2 cut(s)	180, 413
SfcI	CTRYAG	2 cut(s)	579, 781
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	3 cut(s)	212, 560, 827
SmiMI	CAYNNNNRTG	2 cut(s)	149, 728
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	3 cut(s)	59, 219, 858
SsiI	CCGC	7 cut(s)	20, 86, 123, 511, 717, 742, 801
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	3 cut(s)	351, 567, 723
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	59, 219, 858
TfiI	GAWTC	6 cut(s)	76, 82, 126, 234, 481, 628
Tru1I	TTAA	5 cut(s)	218, 440, 462, 636, 735
Tru9I	TTAA	5 cut(s)	218, 440, 462, 636, 735
TscAI	CASTG	4 cut(s)	151, 315, 439, 714
TseFI	GTSAC	2 cut(s)	25, 151
TseI	GCWGC	4 cut(s)	193, 578, 581, 754
Tsp45I	GTSAC	2 cut(s)	25, 151
TspGWI	ACGGA	4 cut(s)	121, 204, 333, 640
TspRI	CASTG	4 cut(s)	151, 315, 439, 714
VpaK11BI	GGWCC	3 cut(s)	212, 560, 827
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.