Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Forward (+)

36458039 .. 36459166

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTGGCTTTCTCCTATATGCTCTTCCCGTTGTCTCTCCCCAAACCTCCAACCAAGCCGCTGTCCCTAGATGCCTCCGACCCCCTCCACAATGCCATTGACGTGAACGACGAGTTGTGCGTCGCGCATGCGATTAGGAACCTCTGCCAAGGCCCTTCATCAATGGTGGAGCCTTTGGTATGCTCGCTACCTGCGTCATCCAACCCATCGATACGATCAAGTGCTGAGAAGGCTGGGAGTGAAGGGCGTGGAGACCCAGAACCAAGTCAGAGGTTGCTCTTTGTGCGGCTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

98

Amino Acids

10.5

Weight (kDa)

5.53

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccII	CGCG	1 cut(s)	125
AciI	CCGC	2 cut(s)	59, 286
AjiI	CACGTC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	39, 246
AoxI	GGCC	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	152
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	39, 246
BfaI	CTAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	59, 287
BlsI	GCNGC	2 cut(s)	60, 288
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	140, 171
BmsI	GCATC	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	39, 246
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	2 cut(s)	59, 286
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	140, 171
BspMI	ACCTGC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	129, 185
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	39, 246
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 283
BstNSI	RCATGY	1 cut(s)	131
BstUI	CGCG	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	129, 185
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	209
CseI	GACGC	2 cut(s)	109, 183
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	6 cut(s)	8, 58, 153, 172, 233, 289
CviKI_1	RGCY	6 cut(s)	8, 58, 153, 172, 233, 289
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	18, 20, 129, 181
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	59, 287
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	59, 287
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	59, 287
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	2 cut(s)	109, 183
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	79, 270
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	113, 125
HpyAV	CCTTC	3 cut(s)	165, 223, 236
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 283
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	204, 219, 270
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	102
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	16
MmeI	TCCRAC	3 cut(s)	74, 102, 225
MnlI	CCTC	5 cut(s)	57, 85, 95, 152, 264
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	230, 283
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	140, 171
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 117, 191
PkrI	GCNGC	2 cut(s)	60, 288
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	140, 171
PspPI	GGNCC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	29
SatI	GCNGC	2 cut(s)	59, 287
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	1 cut(s)	152
SetI	ASST	5 cut(s)	49, 105, 144, 193, 275
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	131
SsiI	CCGC	2 cut(s)	59, 286
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	209
TauI	GCSGC	2 cut(s)	61, 289
TspDTI	ATGAA	1 cut(s)	147
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.