Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

54329442 .. 54332165

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG354500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAAGCGGATGAGAAGCCGAGCTGGGGTTTGGTGTCACCGTCCGGAGTGGCCTATCATTTCGGTACGAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTCACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACGATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACACCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATTGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGACTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGTACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACTGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTATAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

299

Amino Acids

32.26

Weight (kDa)

9.85

Isoelectric Point (pI)

27.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	16 - 101	1.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 197	2.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	206 - 293	1.5e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	359
AccIII	TCCGGA	1 cut(s)	44
AciI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
AclWI	GGATC	2 cut(s)	348, 361
AfaI	GTAC	4 cut(s)	67, 598, 661, 775
AfiI	CCNNNNNNNGG	3 cut(s)	26, 170, 315
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	194, 412, 608, 889
AluBI	AGCT	7 cut(s)	24, 455, 497, 533, 735, 868, 877
AluI	AGCT	7 cut(s)	24, 455, 497, 533, 735, 868, 877
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	278, 704
AlwI	GGATC	2 cut(s)	348, 361
AlwNI	CAGNNNCTG	1 cut(s)	769
Aor13HI	TCCGGA	1 cut(s)	44
AoxI	GGCC	3 cut(s)	51, 514, 781
ApeKI	GCWGC	4 cut(s)	133, 452, 533, 706
AspS9I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
AsuHPI	GGTGA	5 cut(s)	30, 98, 491, 622, 667
AvaII	GGWCC	5 cut(s)	161, 212, 327, 766, 830
BamHI	GGATCC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	120, 464, 520, 693
BccI	CCATC	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	278, 704
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	3 cut(s)	422, 678, 736
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	4 cut(s)	134, 453, 534, 707
BlsI	GCNGC	4 cut(s)	135, 454, 535, 708
Bme18I	GGWCC	5 cut(s)	161, 212, 327, 766, 830
BmgT120I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
BmiI	GGNNCC	4 cut(s)	328, 355, 806, 831
BmsI	GCATC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	460, 619
BsaAI	YACGTR	1 cut(s)	872
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 170, 315
Bse1I	ACTGG	2 cut(s)	175, 398
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	16, 588
BseLI	CCNNNNNNNGG	3 cut(s)	26, 170, 315
BseMI	GCAATG	1 cut(s)	819
BseNI	ACTGG	2 cut(s)	175, 398
BseXI	GCAGC	4 cut(s)	120, 464, 520, 693
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	3 cut(s)	369, 471, 657
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	3 cut(s)	53, 516, 783
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	26, 170, 315
BsmAI	GTCTC	2 cut(s)	278, 704
BsmBI	CGTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	53, 516, 783
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	596
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
BspANI	GGCC	3 cut(s)	53, 516, 783
BspEI	TCCGGA	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	4 cut(s)	328, 355, 806, 831
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	348, 361
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	175, 398
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	42, 643
Bst6I	CTCTTC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	872
BstC8I	GCNNGC	4 cut(s)	310, 468, 649, 879
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	16, 588
BstFNI	CGCG	1 cut(s)	359
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	278, 704
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 818, 874
BstSFI	CTRYAG	3 cut(s)	422, 678, 736
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	4 cut(s)	120, 464, 520, 693
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	53, 516, 783
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	16, 588
BtsIMutI	CAGTG	1 cut(s)	386
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	310, 468, 649, 879
CaiI	CAGNNNCTG	1 cut(s)	769
Cfr13I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
Cfr42I	CCGCGG	1 cut(s)	360
Csp6I	GTAC	4 cut(s)	66, 597, 660, 774
CviAII	CATG	3 cut(s)	652, 685, 703
CviQI	GTAC	4 cut(s)	66, 597, 660, 774
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	5 cut(s)	161, 212, 327, 766, 830
EcoO109I	RGGNCCY	2 cut(s)	161, 766
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	655, 688, 706
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	651, 684, 702
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	134, 453, 534, 707
FokI	GGATG	2 cut(s)	23, 595
Fsp4HI	GCNGC	4 cut(s)	134, 453, 534, 707
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	4 cut(s)	134, 453, 534, 707
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	53, 516, 783
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	3 cut(s)	655, 688, 706
HinfI	GANTC	4 cut(s)	394, 430, 615, 716
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	5 cut(s)	30, 98, 491, 622, 667
Hpy166II	GTNNAC	5 cut(s)	74, 597, 599, 682, 833
Hpy188I	TCNGA	2 cut(s)	435, 721
Hpy188III	TCNNGA	2 cut(s)	45, 667
Hpy8I	GTNNAC	5 cut(s)	74, 597, 599, 682, 833
HpyAV	CCTTC	5 cut(s)	203, 406, 499, 605, 773
HpyCH4III	ACNGT	2 cut(s)	42, 643
HpyCH4IV	ACGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 818, 874
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	3 cut(s)	655, 688, 706
Kpn2I	TCCGGA	1 cut(s)	44
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	4 cut(s)	120, 464, 520, 693
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	36, 100
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	3 cut(s)	182, 494, 620
MfeI	CAATTG	2 cut(s)	313, 375
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	313, 375, 843
MmeI	TCCRAC	2 cut(s)	354, 709
MnlI	CCTC	9 cut(s)	174, 263, 307, 397, 435, 478, 643, 674, 782
MroI	TCCGGA	1 cut(s)	44
MseI	TTAA	2 cut(s)	201, 345
MspA1I	CMGCKG	2 cut(s)	359, 455
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	45
MunI	CAATTG	2 cut(s)	313, 375
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	139, 818, 874
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	655, 688, 706
NlaIV	GGNNCC	4 cut(s)	328, 355, 806, 831
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	36, 100
PaqCI	CACCTGC	1 cut(s)	250
PfeI	GAWTC	4 cut(s)	394, 430, 615, 716
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	135, 454, 535, 708
Ppu21I	YACGTR	1 cut(s)	872
PpuMI	RGGWCCY	2 cut(s)	161, 766
Psp5II	RGGWCCY	2 cut(s)	161, 766
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	328, 355, 806, 831
PspPI	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
PspPPI	RGGWCCY	2 cut(s)	161, 766
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	4 cut(s)	67, 598, 661, 775
RsaNI	GTAC	4 cut(s)	66, 597, 660, 774
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	201, 345
SatI	GCNGC	4 cut(s)	134, 453, 534, 707
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	3 cut(s)	422, 678, 736
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SinI	GGWCC	5 cut(s)	161, 212, 327, 766, 830
SmlI	CTYRAG	3 cut(s)	200, 439, 634
SmoI	CTYRAG	3 cut(s)	200, 439, 634
Sse9I	AATT	3 cut(s)	313, 375, 843
SsiI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
SspMI	CTAG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	42, 643
TaiI	ACGT	1 cut(s)	874
TasI	AATT	3 cut(s)	313, 375, 843
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	394, 430, 615, 716
Tru1I	TTAA	2 cut(s)	201, 345
Tru9I	TTAA	2 cut(s)	201, 345
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	36, 100
TseI	GCWGC	4 cut(s)	133, 452, 533, 706
Tsp45I	GTSAC	2 cut(s)	36, 100
TspDTI	ATGAA	5 cut(s)	17, 222, 306, 443, 740
TspGWI	ACGGA	2 cut(s)	70, 266
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	5 cut(s)	161, 212, 327, 766, 830
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.