Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

41477130 .. 41478425

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1297200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAAAGTGAAGAACGAGAGGCAGAGTTGGGCGGCGGTGTCGCCGTCCGAGGTTGTCTATCACTTCGGCACCAGTGGACTTTCCGTTGCGGCGGCCACCGCAGTAACTCATCCTCTAGAGATTATGGTATTAAGATTTGGCAATGGATCCGATTTAGAATCGGAGAAGTTTTTTAGTGTGACCGCCATATTGACCCATGTTGTTACTAATTCACGTGTTATATGGAATGGACAACATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

81

Amino Acids

8.7

Weight (kDa)

6.9

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	6 cut(s)	32, 35, 89, 92, 99, 183
AclWI	GGATC	2 cut(s)	141, 154
AcoI	YGGCCR	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	214
AlwI	GGATC	2 cut(s)	141, 154
AoxI	GGCC	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	33, 90, 93
BlsI	GCNGC	3 cut(s)	34, 91, 94
BmiI	GGNNCC	2 cut(s)	70, 148
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	146
BspACI	CCGC	6 cut(s)	32, 35, 89, 92, 99, 183
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	70, 148
BspPI	GGATC	2 cut(s)	141, 154
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	79
CviAII	CATG	2 cut(s)	197, 236
CviJI	RGCY	1 cut(s)	95
CviKI_1	RGCY	1 cut(s)	95
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	215
FaeI	CATG	2 cut(s)	200, 239
FaiI	YATR	6 cut(s)	125, 188, 198, 221, 223, 237
FatI	CATG	2 cut(s)	196, 235
Fnu4HI	GCNGC	3 cut(s)	33, 90, 93
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	33, 90, 93
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	33, 90, 93
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	200, 239
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	49, 151, 163
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	200, 239
Kzo9I	GATC	1 cut(s)	146
LpnPI	CCDG	1 cut(s)	85
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	103, 178, 202
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	3 cut(s)	12, 43, 123
MseI	TTAA	2 cut(s)	131, 241
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	200, 239
NlaIV	GGNNCC	2 cut(s)	70, 148
NmuCI	GTSAC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	34, 91, 94
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	215
PspCI	CACGTG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	70, 148
PsuI	RGATCY	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	131, 241
SatI	GCNGC	3 cut(s)	33, 90, 93
Sau3AI	GATC	1 cut(s)	146
SetI	ASST	2 cut(s)	54, 217
SgeI	CNNG	7 cut(s)	28, 61, 84, 128, 209, 225, 227
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	6 cut(s)	32, 35, 89, 92, 99, 183
SspMI	CTAG	1 cut(s)	116
TaiI	ACGT	1 cut(s)	217
TasI	AATT	1 cut(s)	208
TauI	GCSGC	3 cut(s)	35, 92, 95
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	131, 241
Tru9I	TTAA	2 cut(s)	131, 241
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	115
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.