Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

21624748 .. 21628306

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G251700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAAGTGAATGGGAAGCAGAGTTGGGCGGTGTCGCCGTCCGATGTTGTTTATCATTTCGGTACGAGTGGACTTTCCGTTGCGGCTGCCACCGCGGTAACTCATCCTCTAGATGTTCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGCCAGAAAGGCCCCCTTACTGGAATGGGACGATTGTTTCTCCAAACTTTTAAAAACGAAGGGCCAAGATTTTTGTATCTTGGGTTGGCACCAGCATTGACAAGGTCTGTTCTTTATGGGGGTCTCCGTTTAGGCTTGTATGAGCCCTCAAAGTATGCCTTCAATTGGGCTTTTGGGTCGACCAATATTTTTGCGAAGATTGCATCTGCAGGATTTGGCGGTGCAATTGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGGTTACAGATGAATCCACACTTGAGTAAAGGTGGGCCAACGGGAGAACTGCGTAGGATGATTTCTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGGGTTGGCCCTGCTATGGCCAGAGCTGCTACGTTGACTGCATCACAACTTGCAACATATGATGAAACCAAGCGGATATTGATCAGGTTGACATCACTTGAAGAAGGATTCAATCTACATCTCATCTCAAGCACAGTCGCAGGCATGGCGAGTACCCTCATAACTGCGCCAGTGGACATGATAAAAACCCGTCTGATGTTGCAGAAGGAATCTAAAAGGATGGGAAGCTATAAAAATGGATTTCACTGTGCATACCAGGTTATGCTTACAGAAGGCCCCAAGGGTCTTTACAAGGGGAGCCTTGCAACTTTTGCAAGATTGGGTCCACAAACTACAATTACCTTCATACTGTGTGAGAAGTTGCGTGAGCTTACTGGATTGAACGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

300

Amino Acids

32.31

Weight (kDa)

10.0

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	326
AccII	CGCG	1 cut(s)	95
AciI	CCGC	7 cut(s)	29, 83, 93, 95, 366, 415, 580
AcoI	YGGCCR	2 cut(s)	148, 525
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	64, 661
AfiI	CCNNNNNNNGG	3 cut(s)	167, 312, 523
AgsI	TTSAA	5 cut(s)	310, 409, 608, 619, 889
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	4 cut(s)	497, 533, 735, 877
AluI	AGCT	4 cut(s)	497, 533, 735, 877
Alw26I	GTCTC	1 cut(s)	275
AoxI	GGCC	7 cut(s)	148, 157, 209, 449, 514, 525, 781
ApeKI	GCWGC	3 cut(s)	86, 130, 533
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	6 cut(s)	158, 209, 449, 515, 782, 830
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	2 cut(s)	150, 527
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	73, 117, 520
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	110, 898
BfmI	CTRYAG	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	84, 87, 131, 534
BlsI	GCNGC	4 cut(s)	85, 88, 132, 535
Bme1390I	CCNGG	1 cut(s)	764
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	6 cut(s)	158, 209, 449, 515, 782, 830
BmiI	GGNNCC	5 cut(s)	160, 237, 784, 806, 831
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	2 cut(s)	359, 557
BpuEI	CTTGAG	2 cut(s)	457, 619
BsaBI	GATNNNNATC	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	93, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 312, 523
Bse1I	ACTGG	4 cut(s)	172, 395, 677, 886
Bse8I	GATNNNNATC	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	93, 786
BseGI	GGATG	3 cut(s)	103, 477, 732
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	3 cut(s)	167, 312, 523
BseNI	ACTGG	4 cut(s)	172, 395, 677, 886
BseXI	GCAGC	3 cut(s)	73, 117, 520
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	7 cut(s)	150, 159, 211, 451, 516, 527, 783
BshNI	GGYRCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	167, 312, 523
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	7 cut(s)	150, 159, 211, 451, 516, 527, 783
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	588
BspACI	CCGC	7 cut(s)	29, 83, 93, 95, 366, 415, 580
BspANI	GGCC	7 cut(s)	150, 159, 211, 451, 516, 527, 783
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	5 cut(s)	160, 237, 784, 806, 831
BspMAI	CTGCAG	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	4 cut(s)	172, 395, 677, 886
BssECI	CCNNGG	2 cut(s)	93, 786
BssMI	GATC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	643, 755, 858
Bst6I	CTCTTC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	649
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	103, 477, 732
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 136, 156, 347, 533, 653, 818
BstNI	CCWGG	1 cut(s)	764
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	73, 117, 520
BsuRI	GGCC	7 cut(s)	150, 159, 211, 451, 516, 527, 783
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	103, 477, 732
BtsIMutI	CAGTG	3 cut(s)	383, 684, 751
Cac8I	GCNNGC	1 cut(s)	649
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	6 cut(s)	158, 209, 449, 515, 782, 830
Cfr42I	CCGCGG	1 cut(s)	96
CsiI	ACCWGGT	1 cut(s)	762
Csp6I	GTAC	2 cut(s)	63, 660
CviAII	CATG	2 cut(s)	652, 685
CviQI	GTAC	2 cut(s)	63, 660
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DraI	TTTAAA	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	148, 525
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	1 cut(s)	501
EcoO109I	RGGNCCY	2 cut(s)	158, 782
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	2 cut(s)	655, 688
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 290, 322
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	651, 684
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	84, 87, 131, 534
FokI	GGATG	3 cut(s)	90, 484, 739
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	84, 87, 131, 534
FspBI	CTAG	2 cut(s)	110, 898
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	4 cut(s)	84, 87, 131, 534
HaeIII	GGCC	7 cut(s)	150, 159, 211, 451, 516, 527, 783
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	2 cut(s)	655, 688
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	3 cut(s)	327, 543, 597
HindII	GTYRAC	3 cut(s)	327, 543, 597
HinfI	GANTC	4 cut(s)	391, 427, 615, 716
Hpy166II	GTNNAC	6 cut(s)	71, 327, 543, 597, 682, 833
Hpy188I	TCNGA	3 cut(s)	43, 481, 702
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	6 cut(s)	71, 327, 543, 597, 682, 833
HpyAV	CCTTC	8 cut(s)	200, 316, 403, 499, 605, 706, 773, 859
HpyCH4III	ACNGT	3 cut(s)	643, 755, 858
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 136, 156, 347, 533, 653, 818
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	655, 688
HspAI	GCGC	1 cut(s)	674
Ksp22I	TGATCA	1 cut(s)	588
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	3 cut(s)	73, 117, 520
LweI	GCATC	2 cut(s)	359, 557
MabI	ACCWGGT	1 cut(s)	762
MaeI	CTAG	2 cut(s)	110, 898
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	2 cut(s)	97, 417
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	3 cut(s)	355, 494, 620
MfeI	CAATTG	2 cut(s)	310, 372
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	2 cut(s)	150, 527
MluCI	AATT	3 cut(s)	310, 372, 843
MluNI	TGGCCA	2 cut(s)	150, 527
MnlI	CCTC	5 cut(s)	117, 304, 394, 478, 674
Mox20I	TGGCCA	2 cut(s)	150, 527
MscI	TGGCCA	2 cut(s)	150, 527
MseI	TTAA	1 cut(s)	198
Msp20I	TGGCCA	2 cut(s)	150, 527
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	764
MunI	CAATTG	2 cut(s)	310, 372
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	7 cut(s)	92, 136, 156, 347, 533, 653, 818
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	1 cut(s)	588
NlaIII	CATG	2 cut(s)	655, 688
NlaIV	GGNNCC	5 cut(s)	160, 237, 784, 806, 831
PfeI	GAWTC	4 cut(s)	391, 427, 615, 716
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	85, 88, 132, 535
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	5 cut(s)	160, 237, 784, 806, 831
PspPI	GGNCC	6 cut(s)	158, 209, 449, 515, 782, 830
PstI	CTGCAG	1 cut(s)	358
PsyI	GACNNNGTC	1 cut(s)	250
RsaI	GTAC	2 cut(s)	64, 661
RsaNI	GTAC	2 cut(s)	63, 660
SacII	CCGCGG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	84, 87, 131, 534
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	6 cut(s)	158, 209, 449, 515, 782, 830
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	1 cut(s)	294
SexAI	ACCWGGT	1 cut(s)	762
SfaNI	GCATC	2 cut(s)	359, 557
SfcI	CTRYAG	1 cut(s)	354
SfiI	GGCCNNNNNGGCC	1 cut(s)	156
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	2 cut(s)	436, 634
SmoI	CTYRAG	2 cut(s)	436, 634
Sse9I	AATT	3 cut(s)	310, 372, 843
SsiI	CCGC	7 cut(s)	29, 83, 93, 95, 366, 415, 580
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	110, 898
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	3 cut(s)	643, 755, 858
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	310, 372, 843
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	4 cut(s)	391, 427, 615, 716
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	390, 684, 758
TseI	GCWGC	3 cut(s)	86, 130, 533
TspDTI	ATGAA	4 cut(s)	17, 440, 585, 841
TspGWI	ACGGA	2 cut(s)	67, 263
TspRI	CASTG	3 cut(s)	390, 684, 758
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	830
XbaI	TCTAGA	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	2 cut(s)	110, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.