Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

20057629 .. 20060734

Gene Structure 3106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24640.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCGTCGTTTTGTCATCCGAATTTTCTTATTCGGACAGAGCAGCGGAAAAGTCGGAGGCCCTCCAAAGTTGACGGAGAGAAACTCGGAGGGAGGAAGCGAAATCTGCGTCCCGGAAAATCTGGGCTTTCTTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGGTGGGGGTTGGTGTCACCGTCCGGTGTGGCCTATCATTTCGGTACAAGTGGACTCTCCGTTGCGGTGGCTACCGTAGTAACTCACCCTTTAGATGTGCTCAAAGTGAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTTACTGGAATGGGTCGATTGTTTCTTCAAGTTTTTAAGAATGAAGGACCGAGGTTTTTGTATCTGGGATTGACGCCTGCATTGACAAGGTCCGTGCTTTATGGAGGTCTCCGTCTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCATTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCAGGATTCAGTGGTGCAGTTGCAACTGCACTGACGAATCCGGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGAGCAGCCAGAGAACTCCGTGCAATCATTTCTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGAGTTGGACCTGCTATGGCTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGATGAAACGAAGCGGATGTTGATTAGATTGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCGAGCACAGTTGCAGGCTTGGTGAGTACCCTCCTGACAGCACCCGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATCCGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCTTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTGTAGTCTGTGAGCAGCTACGTGAGCTTGTTGGAATGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

347

Amino Acids

37.65

Weight (kDa)

10.07

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	63 - 148	1e-17	Mitochondrial carrier protein
Mito_carr	PF00153	159 - 245	1.6e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	5 cut(s)	45, 149, 227, 498, 721
AclWI	GGATC	2 cut(s)	489, 502
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	3 cut(s)	208, 802, 916
AfiI	CCNNNNNNNGG	3 cut(s)	167, 311, 456
AgsI	TTSAA	3 cut(s)	335, 553, 749
AluBI	AGCT	5 cut(s)	638, 674, 876, 1009, 1018
AluI	AGCT	5 cut(s)	638, 674, 876, 1009, 1018
Alw21I	GWGCWC	2 cut(s)	264, 782
Alw26I	GTCTC	2 cut(s)	419, 845
AlwI	GGATC	2 cut(s)	489, 502
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	3 cut(s)	58, 192, 922
ApeKI	GCWGC	6 cut(s)	42, 274, 593, 674, 847, 1006
ApoI	RAATTY	1 cut(s)	21
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspS9I	GGNCC	8 cut(s)	59, 302, 353, 396, 468, 656, 923, 971
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	171, 239, 763, 808
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	6 cut(s)	302, 353, 396, 468, 656, 971
BamHI	GGATCC	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	264, 782
BbvI	GCAGC	6 cut(s)	54, 261, 605, 661, 834, 1018
BccI	CCATC	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	419, 845
BfaI	CTAG	2 cut(s)	422, 669
BfmI	CTRYAG	2 cut(s)	563, 877
BfuAI	ACCTGC	1 cut(s)	667
BisI	GCNGC	6 cut(s)	43, 275, 594, 675, 848, 1007
BlsI	GCNGC	6 cut(s)	44, 276, 595, 676, 849, 1008
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	6 cut(s)	302, 353, 396, 468, 656, 971
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	8 cut(s)	59, 302, 353, 396, 468, 656, 923, 971
BmiI	GGNNCC	4 cut(s)	469, 496, 947, 972
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	1013
BsaHI	GRCGYC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	161, 356
BsaWI	WCCGGW	2 cut(s)	185, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 311, 456
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	161, 356
BseGI	GGATG	3 cut(s)	15, 157, 729
BseLI	CCNNNNNNNGG	3 cut(s)	167, 311, 456
BseMI	GCAATG	1 cut(s)	960
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	6 cut(s)	54, 261, 605, 661, 834, 1018
BsgI	GTGCAG	2 cut(s)	510, 534
BshFI	GGCC	3 cut(s)	60, 194, 924
BsiHKAI	GWGCWC	2 cut(s)	264, 782
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	3 cut(s)	113, 186, 539
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	167, 311, 456
BsmAI	GTCTC	2 cut(s)	419, 845
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	60, 194, 924
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	264, 782
Bsp143I	GATC	1 cut(s)	494
BspACI	CCGC	5 cut(s)	45, 149, 227, 498, 721
BspANI	GGCC	3 cut(s)	60, 194, 924
BspLI	GGNNCC	4 cut(s)	469, 496, 947, 972
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	489, 502
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	161, 356
BssMI	GATC	1 cut(s)	494
BssNI	GRCGYC	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	183, 238, 784
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	1013
BstC8I	GCNNGC	3 cut(s)	384, 451, 790
BstF5I	GGATG	3 cut(s)	15, 157, 729
BstKTI	GATC	1 cut(s)	497
BstMAI	GTCTC	2 cut(s)	419, 845
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 280, 674, 959, 1015
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	563, 877
BstV1I	GCAGC	6 cut(s)	54, 261, 605, 661, 834, 1018
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	60, 194, 924
BtsCI	GGATG	3 cut(s)	15, 157, 729
BtsIMutI	CAGTG	2 cut(s)	514, 527
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	3 cut(s)	384, 451, 790
Cfr13I	GGNCC	8 cut(s)	59, 302, 353, 396, 468, 656, 923, 971
CseI	GACGC	2 cut(s)	97, 388
Csp6I	GTAC	3 cut(s)	207, 801, 915
CviAII	CATG	2 cut(s)	826, 844
CviQI	GTAC	3 cut(s)	207, 801, 915
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	6 cut(s)	302, 353, 396, 468, 656, 971
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	775
EcoO109I	RGGNCCY	2 cut(s)	59, 302
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	2 cut(s)	829, 847
FaiI	YATR	9 cut(s)	408, 432, 447, 665, 708, 827, 845, 879, 901
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	825, 843
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	6 cut(s)	43, 275, 594, 675, 848, 1007
FokI	GGATG	3 cut(s)	2, 164, 736
Fsp4HI	GCNGC	6 cut(s)	43, 275, 594, 675, 848, 1007
FspBI	CTAG	2 cut(s)	422, 669
GluI	GCNGC	6 cut(s)	43, 275, 594, 675, 848, 1007
HaeIII	GGCC	3 cut(s)	60, 194, 924
HapII	CCGG	3 cut(s)	113, 186, 539
HgaI	GACGC	2 cut(s)	97, 388
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	829, 847
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	6 cut(s)	216, 504, 535, 571, 756, 857
HpaII	CCGG	3 cut(s)	113, 186, 539
HphI	GGTGA	4 cut(s)	171, 239, 763, 808
Hpy166II	GTNNAC	4 cut(s)	72, 215, 823, 974
Hpy188I	TCNGA	7 cut(s)	20, 35, 56, 88, 576, 622, 862
Hpy188III	TCNNGA	1 cut(s)	808
Hpy8I	GTNNAC	4 cut(s)	72, 215, 823, 974
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	5 cut(s)	344, 547, 640, 746, 914
HpyCH4III	ACNGT	3 cut(s)	183, 238, 784
HpyCH4IV	ACGT	1 cut(s)	1012
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 280, 674, 959, 1015
HpySE526I	ACGT	1 cut(s)	1012
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	829, 847
Kzo9I	GATC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	590, 945
Lsp1109I	GCAGC	6 cut(s)	54, 261, 605, 661, 834, 1018
LweI	GCATC	1 cut(s)	698
MaeI	CTAG	2 cut(s)	422, 669
MaeII	ACGT	1 cut(s)	1012
MaeIII	GTNAC	2 cut(s)	177, 241
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	3 cut(s)	323, 635, 761
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	264, 782
MluCI	AATT	3 cut(s)	21, 454, 984
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	5 cut(s)	34, 495, 634, 850, 1003
MseI	TTAA	2 cut(s)	342, 486
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	113, 186, 539
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	454
MwoI	GCNNNNNNNGC	5 cut(s)	105, 280, 674, 959, 1015
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	2 cut(s)	829, 847
NlaIV	GGNNCC	4 cut(s)	469, 496, 947, 972
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	775
PfeI	GAWTC	5 cut(s)	504, 535, 571, 756, 857
PflFI	GACNNNGTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	44, 276, 595, 676, 849, 1008
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	1013
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	4 cut(s)	469, 496, 947, 972
PspPI	GGNCC	8 cut(s)	59, 302, 353, 396, 468, 656, 923, 971
PspPPI	RGGWCCY	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	208, 802, 916
RsaNI	GTAC	3 cut(s)	207, 801, 915
SaqAI	TTAA	2 cut(s)	342, 486
SatI	GCNGC	6 cut(s)	43, 275, 594, 675, 848, 1007
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	8 cut(s)	59, 302, 353, 396, 468, 656, 923, 971
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	264, 782
SfaNI	GCATC	1 cut(s)	698
SfcI	CTRYAG	2 cut(s)	563, 877
Sfr274I	CTCGAG	1 cut(s)	775
SinI	GGWCC	6 cut(s)	302, 353, 396, 468, 656, 971
SlaI	CTCGAG	1 cut(s)	775
SmlI	CTYRAG	2 cut(s)	580, 775
SmoI	CTYRAG	2 cut(s)	580, 775
Sse9I	AATT	3 cut(s)	21, 454, 984
SsiI	CCGC	5 cut(s)	45, 149, 227, 498, 721
SspMI	CTAG	2 cut(s)	422, 669
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	183, 238, 784
TaiI	ACGT	1 cut(s)	1015
TaqI	TCGA	2 cut(s)	322, 776
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	21, 454, 984
TfiI	GAWTC	5 cut(s)	504, 535, 571, 756, 857
Tru1I	TTAA	2 cut(s)	342, 486
Tru9I	TTAA	2 cut(s)	342, 486
TscAI	CASTG	2 cut(s)	514, 534
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	6 cut(s)	42, 274, 593, 674, 847, 1006
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	6 cut(s)	158, 363, 447, 584, 726, 881
TspGWI	ACGGA	5 cut(s)	89, 211, 388, 407, 596
TspRI	CASTG	2 cut(s)	514, 534
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	6 cut(s)	302, 353, 396, 468, 656, 971
XapI	RAATTY	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	2 cut(s)	422, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.