Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

55355641 .. 55358578

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCGTCGTTTTGGGATCCGAATTTTCTTATTCGGACAGAGAGGGCGGCGAAAAGTCAAGAGAGCTCCCAAGTTTGAGGGAGAGAAACTCGGAAGCTCAAATCTGCGTCCGGAAAATCTGGGTTTTGGTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGCTGGGGTTTGGTGTCACCGTCCGGAGTGGCCTATCATTTCGGTACGAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTCACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACGATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACACCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATTGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGACTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGTACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACTGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTATAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

345

Amino Acids

37.55

Weight (kDa)

10.32

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	62 - 147	1.6e-17	Mitochondrial carrier protein
Mito_carr	PF00153	158 - 243	3.6e-19	Mitochondrial carrier protein
Mito_carr	PF00153	252 - 339	2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	819
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	2 cut(s)	109, 182
AciI	CCGC	7 cut(s)	46, 146, 224, 234, 495, 497, 718
AclWI	GGATC	4 cut(s)	10, 23, 486, 499
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	4 cut(s)	205, 736, 799, 913
AfiI	CCNNNNNNNGG	3 cut(s)	164, 308, 453
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	332, 550, 746, 1027
AluBI	AGCT	9 cut(s)	65, 96, 162, 593, 635, 671, 873, 1006, 1015
AluI	AGCT	9 cut(s)	65, 96, 162, 593, 635, 671, 873, 1006, 1015
Alw21I	GWGCWC	2 cut(s)	67, 261
Alw26I	GTCTC	2 cut(s)	416, 842
AlwI	GGATC	4 cut(s)	10, 23, 486, 499
AlwNI	CAGNNNCTG	1 cut(s)	907
Aor13HI	TCCGGA	2 cut(s)	109, 182
AoxI	GGCC	3 cut(s)	189, 652, 919
ApeKI	GCWGC	4 cut(s)	271, 590, 671, 844
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	7 cut(s)	299, 350, 465, 653, 904, 920, 968
AsuHPI	GGTGA	5 cut(s)	168, 236, 629, 760, 805
AvaII	GGWCC	5 cut(s)	299, 350, 465, 904, 968
BamHI	GGATCC	2 cut(s)	15, 491
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	67, 261
BbvI	GCAGC	4 cut(s)	258, 602, 658, 831
BccI	CCATC	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	416, 842
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	3 cut(s)	560, 816, 874
BfrI	CTTAAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	5 cut(s)	47, 272, 591, 672, 845
BlsI	GCNGC	5 cut(s)	48, 273, 592, 673, 846
Bme18I	GGWCC	5 cut(s)	299, 350, 465, 904, 968
BmgT120I	GGNCC	7 cut(s)	299, 350, 465, 653, 904, 920, 968
BmiI	GGNNCC	5 cut(s)	17, 466, 493, 944, 969
BmsI	GCATC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	598, 757
BsaAI	YACGTR	1 cut(s)	1010
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	2 cut(s)	109, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 308, 453
Bse1I	ACTGG	2 cut(s)	313, 536
Bse3DI	GCAATG	1 cut(s)	957
BseAI	TCCGGA	2 cut(s)	109, 182
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	154, 726
BseLI	CCNNNNNNNGG	3 cut(s)	164, 308, 453
BseMI	GCAATG	1 cut(s)	957
BseNI	ACTGG	2 cut(s)	313, 536
BseXI	GCAGC	4 cut(s)	258, 602, 658, 831
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	3 cut(s)	507, 609, 795
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	191, 654, 921
BsiHKAI	GWGCWC	2 cut(s)	67, 261
BsiSI	CCGG	2 cut(s)	110, 183
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	164, 308, 453
BsmAI	GTCTC	2 cut(s)	416, 842
BsmBI	CGTCTC	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	191, 654, 921
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	67, 261
Bsp13I	TCCGGA	2 cut(s)	109, 182
Bsp1407I	TGTACA	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	15, 491
BspACI	CCGC	7 cut(s)	46, 146, 224, 234, 495, 497, 718
BspANI	GGCC	3 cut(s)	191, 654, 921
BspEI	TCCGGA	2 cut(s)	109, 182
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	5 cut(s)	17, 466, 493, 944, 969
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	4 cut(s)	10, 23, 486, 499
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	957
BsrGI	TGTACA	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	313, 536
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	15, 491
Bst4CI	ACNGT	2 cut(s)	180, 781
Bst6I	CTCTTC	1 cut(s)	615
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstAUI	TGTACA	1 cut(s)	734
BstBAI	YACGTR	1 cut(s)	1010
BstC8I	GCNNGC	4 cut(s)	448, 606, 787, 1017
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	154, 726
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	2 cut(s)	18, 494
BstMAI	GTCTC	2 cut(s)	416, 842
BstMBI	GATC	2 cut(s)	15, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 956, 1012
BstSFI	CTRYAG	3 cut(s)	560, 816, 874
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	4 cut(s)	258, 602, 658, 831
BstX2I	RGATCY	2 cut(s)	15, 491
BstYI	RGATCY	2 cut(s)	15, 491
BsuRI	GGCC	3 cut(s)	191, 654, 921
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	154, 726
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	4 cut(s)	448, 606, 787, 1017
CaiI	CAGNNNCTG	1 cut(s)	907
Cfr13I	GGNCC	7 cut(s)	299, 350, 465, 653, 904, 920, 968
Cfr42I	CCGCGG	1 cut(s)	498
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	204, 735, 798, 912
CviAII	CATG	3 cut(s)	790, 823, 841
CviQI	GTAC	4 cut(s)	204, 735, 798, 912
DpnI	GATC	2 cut(s)	17, 493
DpnII	GATC	2 cut(s)	15, 491
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	5 cut(s)	299, 350, 465, 904, 968
Eco53kI	GAGCTC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	299, 904
EcoT38I	GRGCYC	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	842
FaeI	CATG	3 cut(s)	793, 826, 844
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	789, 822, 840
FauI	CCCGC	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	5 cut(s)	47, 272, 591, 672, 845
FokI	GGATG	2 cut(s)	161, 733
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	47, 272, 591, 672, 845
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	5 cut(s)	47, 272, 591, 672, 845
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	191, 654, 921
HapII	CCGG	2 cut(s)	110, 183
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	793, 826, 844
HinfI	GANTC	4 cut(s)	532, 568, 753, 854
HpaII	CCGG	2 cut(s)	110, 183
HphI	GGTGA	5 cut(s)	168, 236, 629, 760, 805
Hpy166II	GTNNAC	5 cut(s)	212, 735, 737, 820, 971
Hpy188I	TCNGA	5 cut(s)	20, 35, 92, 573, 859
Hpy188III	TCNNGA	4 cut(s)	58, 110, 183, 805
Hpy8I	GTNNAC	5 cut(s)	212, 735, 737, 820, 971
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	5 cut(s)	341, 544, 637, 743, 911
HpyCH4III	ACNGT	2 cut(s)	180, 781
HpyCH4IV	ACGT	1 cut(s)	1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 956, 1012
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	3 cut(s)	793, 826, 844
Kpn2I	TCCGGA	2 cut(s)	109, 182
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	15, 491
LmnI	GCTCC	2 cut(s)	70, 942
Lsp1109I	GCAGC	4 cut(s)	258, 602, 658, 831
LweI	GCATC	1 cut(s)	695
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	2 cut(s)	174, 238
MalI	GATC	2 cut(s)	17, 493
MboI	GATC	2 cut(s)	15, 491
MboII	GAAGA	3 cut(s)	320, 632, 758
MfeI	CAATTG	2 cut(s)	451, 513
MflI	RGATCY	2 cut(s)	15, 491
MhlI	GDGCHC	2 cut(s)	67, 261
MluCI	AATT	4 cut(s)	21, 451, 513, 981
MmeI	TCCRAC	2 cut(s)	492, 847
MroI	TCCGGA	2 cut(s)	109, 182
MseI	TTAA	2 cut(s)	339, 483
MspA1I	CMGCKG	2 cut(s)	497, 593
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	2 cut(s)	110, 183
MunI	CAATTG	2 cut(s)	451, 513
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	277, 956, 1012
NdeII	GATC	2 cut(s)	15, 491
NlaIII	CATG	3 cut(s)	793, 826, 844
NlaIV	GGNNCC	5 cut(s)	17, 466, 493, 944, 969
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	174, 238
PaqCI	CACCTGC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	532, 568, 753, 854
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	48, 273, 592, 673, 846
Ppu21I	YACGTR	1 cut(s)	1010
PpuMI	RGGWCCY	2 cut(s)	299, 904
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	2 cut(s)	299, 904
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	17, 466, 493, 944, 969
PspPI	GGNCC	7 cut(s)	299, 350, 465, 653, 904, 920, 968
PspPPI	RGGWCCY	2 cut(s)	299, 904
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	15, 491
PsyI	GACNNNGTC	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	205, 736, 799, 913
RsaNI	GTAC	4 cut(s)	204, 735, 798, 912
SacI	GAGCTC	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	339, 483
SatI	GCNGC	5 cut(s)	47, 272, 591, 672, 845
Sau3AI	GATC	2 cut(s)	15, 491
Sau96I	GGNCC	7 cut(s)	299, 350, 465, 653, 904, 920, 968
SduI	GDGCHC	2 cut(s)	67, 261
SfaNI	GCATC	1 cut(s)	695
SfcI	CTRYAG	3 cut(s)	560, 816, 874
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	5 cut(s)	299, 350, 465, 904, 968
SmlI	CTYRAG	3 cut(s)	338, 577, 772
SmoI	CTYRAG	3 cut(s)	338, 577, 772
Sse9I	AATT	4 cut(s)	21, 451, 513, 981
SsiI	CCGC	7 cut(s)	46, 146, 224, 234, 495, 497, 718
SspMI	CTAG	1 cut(s)	666
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	180, 781
TaiI	ACGT	1 cut(s)	1012
TasI	AATT	4 cut(s)	21, 451, 513, 981
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	4 cut(s)	532, 568, 753, 854
Tru1I	TTAA	2 cut(s)	339, 483
Tru9I	TTAA	2 cut(s)	339, 483
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	174, 238
TseI	GCWGC	4 cut(s)	271, 590, 671, 844
Tsp45I	GTSAC	2 cut(s)	174, 238
TspDTI	ATGAA	5 cut(s)	155, 360, 444, 581, 878
TspGWI	ACGGA	2 cut(s)	208, 404
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	5 cut(s)	299, 350, 465, 904, 968
XapI	RAATTY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	819
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.