Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Forward (+)

14704251 .. 14706900

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTTCTCAAAAGCCCAAAATGGAGTGCACGAAACGACGTGTCGTTTATTATTTTGGCGGAAGAGGATATAAATAGCGATGCGTCGTTTTGGCATCCTAATTTTTGTTATTCGGACAGGGTGGCGAAAAGTCAAGAGAGCTCCGAGTTTGAGGGAGAGAAACTCGGAAGCTCAAATCTGCGTCCGGAAAATCTGGGTTTTGGTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGTTGGGGTTCGGTGTCACCGTCCGGGGTGGCCTATCATTTCGGTACATGTGGACTTTCCGTTGCGGTGGCTACCGCAGTAACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACGATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACGCCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATCGCAACTGCGCTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAAATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGACTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACAGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACGGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGTGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACAACAATTACCTTTGTAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.27

Weight (kDa)

9.5

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	87 - 172	7.3e-17	Mitochondrial carrier protein
Mito_carr	PF00153	183 - 268	4.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	277 - 364	3.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	1 cut(s)	572
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	7 cut(s)	59, 221, 299, 309, 570, 572, 793
AclWI	GGATC	2 cut(s)	561, 574
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	3 cut(s)	280, 874, 988
AfiI	CCNNNNNNNGG	3 cut(s)	239, 383, 528
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	2 cut(s)	39, 281
AgsI	TTSAA	4 cut(s)	407, 625, 821, 1102
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	8 cut(s)	141, 171, 668, 710, 746, 948, 1081, 1090
AluI	AGCT	8 cut(s)	141, 171, 668, 710, 746, 948, 1081, 1090
Alw21I	GWGCWC	3 cut(s)	31, 143, 336
Alw26I	GTCTC	2 cut(s)	491, 917
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	561, 574
AlwNI	CAGNNNCTG	2 cut(s)	890, 982
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	264, 727, 994
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	346, 665, 746, 919
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	7 cut(s)	374, 425, 540, 728, 979, 995, 1043
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	5 cut(s)	243, 311, 704, 835, 880
AvaII	GGWCC	5 cut(s)	374, 425, 540, 979, 1043
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	31, 143, 336
BbvI	GCAGC	4 cut(s)	333, 677, 733, 906
BccI	CCATC	1 cut(s)	840
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	491, 917
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	2 cut(s)	891, 949
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	347, 666, 747, 920
BlsI	GCNGC	4 cut(s)	348, 667, 748, 921
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	5 cut(s)	374, 425, 540, 979, 1043
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	7 cut(s)	374, 425, 540, 728, 979, 995, 1043
BmiI	GGNNCC	4 cut(s)	541, 568, 1019, 1044
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	70, 103, 770
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	673, 832
BpuMI	CCSGG	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	258, 570
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 383, 528
Bse1I	ACTGG	2 cut(s)	388, 611
Bse3DI	GCAATG	1 cut(s)	1032
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	258, 570
BseGI	GGATG	3 cut(s)	94, 229, 801
BseLI	CCNNNNNNNGG	3 cut(s)	239, 383, 528
BseMI	GCAATG	1 cut(s)	1032
BseNI	ACTGG	2 cut(s)	388, 611
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	333, 677, 733, 906
BsgI	GTGCAG	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	266, 729, 996
BsiHKAI	GWGCWC	3 cut(s)	31, 143, 336
BsiSI	CCGG	2 cut(s)	185, 258
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	239, 383, 528
BsmAI	GTCTC	2 cut(s)	491, 917
BsmBI	CGTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	266, 729, 996
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	3 cut(s)	31, 143, 336
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	566
BspACI	CCGC	7 cut(s)	59, 221, 299, 309, 570, 572, 793
BspANI	GGCC	3 cut(s)	266, 729, 996
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	4 cut(s)	541, 568, 1019, 1044
BspPI	GGATC	2 cut(s)	561, 574
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	1032
BsrI	ACTGG	2 cut(s)	388, 611
BssECI	CCNNGG	2 cut(s)	258, 570
BssMI	GATC	1 cut(s)	566
BssNI	GRCGYC	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	255, 856
Bst6I	CTCTTC	2 cut(s)	57, 690
BstACI	GRCGYC	1 cut(s)	452
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstBAI	YACGTR	1 cut(s)	1085
BstC8I	GCNNGC	5 cut(s)	456, 523, 681, 862, 1092
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	94, 229, 801
BstFNI	CGCG	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	491, 917
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 1031, 1087
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	891, 949
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	333, 677, 733, 906
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	3 cut(s)	266, 729, 996
BtgI	CCRYGG	1 cut(s)	570
BtgZI	GCGATG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	94, 229, 801
Cac8I	GCNNGC	5 cut(s)	456, 523, 681, 862, 1092
CaiI	CAGNNNCTG	2 cut(s)	890, 982
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	7 cut(s)	374, 425, 540, 728, 979, 995, 1043
Cfr42I	CCGCGG	1 cut(s)	573
CseI	GACGC	3 cut(s)	72, 170, 460
Csp6I	GTAC	3 cut(s)	279, 873, 987
CviAII	CATG	4 cut(s)	282, 865, 898, 916
CviQI	GTAC	3 cut(s)	279, 873, 987
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	57, 690
EarI	CTCTTC	2 cut(s)	57, 690
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	5 cut(s)	374, 425, 540, 979, 1043
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	2 cut(s)	374, 979
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	4 cut(s)	285, 868, 901, 919
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	4 cut(s)	281, 864, 897, 915
FauI	CCCGC	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	4 cut(s)	347, 666, 747, 920
FokI	GGATG	3 cut(s)	81, 236, 808
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	4 cut(s)	347, 666, 747, 920
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	4 cut(s)	347, 666, 747, 920
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	266, 729, 996
HapII	CCGG	2 cut(s)	185, 258
HgaI	GACGC	3 cut(s)	72, 170, 460
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	4 cut(s)	285, 868, 901, 919
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HinfI	GANTC	4 cut(s)	607, 643, 828, 929
HpaII	CCGG	2 cut(s)	185, 258
HphI	GGTGA	5 cut(s)	243, 311, 704, 835, 880
Hpy166II	GTNNAC	5 cut(s)	29, 287, 810, 895, 1046
Hpy188I	TCNGA	5 cut(s)	115, 145, 167, 648, 934
Hpy188III	TCNNGA	3 cut(s)	134, 185, 880
Hpy8I	GTNNAC	5 cut(s)	29, 287, 810, 895, 1046
Hpy99I	CGWCG	2 cut(s)	41, 88
HpyAV	CCTTC	5 cut(s)	416, 619, 712, 818, 986
HpyCH4III	ACNGT	2 cut(s)	255, 856
HpyCH4IV	ACGT	2 cut(s)	39, 1084
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 1031, 1087
HpySE526I	ACGT	2 cut(s)	39, 1084
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	4 cut(s)	285, 868, 901, 919
HspAI	GCGC	1 cut(s)	599
Kpn2I	TCCGGA	1 cut(s)	184
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	146, 1017
Lsp1109I	GCAGC	4 cut(s)	333, 677, 733, 906
LweI	GCATC	3 cut(s)	70, 103, 770
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	2 cut(s)	39, 1084
MaeIII	GTNAC	2 cut(s)	249, 313
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	4 cut(s)	74, 395, 707, 833
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	3 cut(s)	31, 143, 336
MluCI	AATT	3 cut(s)	100, 526, 1056
MmeI	TCCRAC	2 cut(s)	567, 922
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	2 cut(s)	414, 558
MspA1I	CMGCKG	2 cut(s)	572, 668
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	2 cut(s)	185, 258
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	352, 1031, 1087
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	4 cut(s)	285, 868, 901, 919
NlaIV	GGNNCC	4 cut(s)	541, 568, 1019, 1044
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	285
PciI	ACATGT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	607, 643, 828, 929
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	348, 667, 748, 921
Ppu21I	YACGTR	1 cut(s)	1085
PpuMI	RGGWCCY	2 cut(s)	374, 979
PscI	ACATGT	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	2 cut(s)	374, 979
PspN4I	GGNNCC	4 cut(s)	541, 568, 1019, 1044
PspPI	GGNCC	7 cut(s)	374, 425, 540, 728, 979, 995, 1043
PspPPI	RGGWCCY	2 cut(s)	374, 979
PstNI	CAGNNNCTG	2 cut(s)	890, 982
PsuI	RGATCY	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	280, 874, 988
RsaNI	GTAC	3 cut(s)	279, 873, 987
SacI	GAGCTC	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	414, 558
SatI	GCNGC	4 cut(s)	347, 666, 747, 920
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	7 cut(s)	374, 425, 540, 728, 979, 995, 1043
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	3 cut(s)	31, 143, 336
SfaNI	GCATC	3 cut(s)	70, 103, 770
SfcI	CTRYAG	2 cut(s)	891, 949
Sfr303I	CCGCGG	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	5 cut(s)	374, 425, 540, 979, 1043
SmlI	CTYRAG	3 cut(s)	413, 652, 847
SmoI	CTYRAG	3 cut(s)	413, 652, 847
Sse9I	AATT	3 cut(s)	100, 526, 1056
SsiI	CCGC	7 cut(s)	59, 221, 299, 309, 570, 572, 793
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	255, 856
TaiI	ACGT	2 cut(s)	42, 1087
TasI	AATT	3 cut(s)	100, 526, 1056
TfiI	GAWTC	4 cut(s)	607, 643, 828, 929
Tru1I	TTAA	2 cut(s)	414, 558
Tru9I	TTAA	2 cut(s)	414, 558
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	4 cut(s)	346, 665, 746, 919
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	5 cut(s)	230, 435, 519, 656, 953
TspGWI	ACGGA	2 cut(s)	283, 479
Tth111I	GACNNNGTC	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	5 cut(s)	374, 425, 540, 979, 1043
XceI	RCATGY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.