Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

22109620 .. 22110595

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCAGAGCTGCTGCGTTGACTGCATCACAACTAGCAACATATGATGAAACCAAGCGGATACTGATTAGGTTGACACCACTCGAAGAAGGATTCCATCTTCATCTCATCTCAAGCACAGTTGCGGGCATGGTGAGTACGCTCATAACTGCACCCGTGGACATGATAAAAACCCGTCTCATGTTACAACAGGAATCTAAAAAGGCTGGAAACTACAAAAATGGCTTCCACTGTGCGTACCAGGTTATGCTTACAGAAGGTCCCAGGGGTCTTTACAAAGGGAGCCTTGCAACTTTTGCAAGGCTGGGTCCACAAACTACAATCACCTTCATACTCTGCGAGAAGTTGCGTGAGCTTGCCGGATTGAACGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

126

Amino Acids

13.71

Weight (kDa)

9.47

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	58, 125
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	139, 239
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	240, 263
AluBI	AGCT	2 cut(s)	11, 355
AluI	AGCT	2 cut(s)	11, 355
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	11, 14
AspS9I	GGNCC	2 cut(s)	260, 308
AsuHPI	GGTGA	2 cut(s)	145, 316
AvaII	GGWCC	2 cut(s)	260, 308
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	242, 265
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	2 cut(s)	242, 265
Bme18I	GGWCC	2 cut(s)	260, 308
BmgT120I	GGNCC	2 cut(s)	260, 308
BmiI	GGNNCC	3 cut(s)	262, 284, 309
BmrFI	CCNGG	2 cut(s)	242, 265
BmsI	GCATC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	156, 263, 264
BseBI	CCWGG	2 cut(s)	242, 265
BseDI	CCNNGG	3 cut(s)	156, 263, 264
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	58, 125
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	262, 284, 309
BssECI	CCNNGG	3 cut(s)	156, 263, 264
Bst2UI	CCWGG	2 cut(s)	242, 265
Bst4CI	ACNGT	2 cut(s)	121, 233
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	127, 357
BstDSI	CCRYGG	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 23, 296
BstNI	CCWGG	2 cut(s)	242, 265
BstSCI	CCNGG	2 cut(s)	240, 263
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	127, 357
Cfr13I	GGNCC	2 cut(s)	260, 308
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	138, 238
CviAII	CATG	3 cut(s)	130, 163, 181
CviJI	RGCY	7 cut(s)	5, 11, 206, 225, 285, 304, 355
CviKI_1	RGCY	7 cut(s)	5, 11, 206, 225, 285, 304, 355
CviQI	GTAC	2 cut(s)	138, 238
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	260, 308
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	240, 263
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	133, 166, 184
FaiI	YATR	8 cut(s)	43, 45, 131, 146, 164, 182, 248, 332
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	129, 162, 180
FauI	CCCGC	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	12, 15
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	12, 15
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	360
Hin1II	CATG	3 cut(s)	133, 166, 184
HincII	GTYRAC	2 cut(s)	21, 75
HindII	GTYRAC	2 cut(s)	21, 75
HinfI	GANTC	2 cut(s)	93, 194
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	145, 316
Hpy166II	GTNNAC	4 cut(s)	21, 75, 160, 311
Hpy8I	GTNNAC	4 cut(s)	21, 75, 160, 311
HpyAV	CCTTC	3 cut(s)	83, 251, 337
HpyCH4III	ACNGT	2 cut(s)	121, 233
HpyCH4V	TGCA	4 cut(s)	26, 152, 290, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 23, 296
Hsp92II	CATG	3 cut(s)	133, 166, 184
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	9 cut(s)	19, 176, 192, 227, 250, 254, 277, 290, 373
LweI	GCATC	1 cut(s)	35
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	92, 98
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	242, 265
MvaI	CCWGG	2 cut(s)	242, 265
MwoI	GCNNNNNNNGC	3 cut(s)	11, 23, 296
NdeI	CATATG	1 cut(s)	43
NlaIII	CATG	3 cut(s)	133, 166, 184
NlaIV	GGNNCC	3 cut(s)	262, 284, 309
PasI	CCCWGGG	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	93, 194
PkrI	GCNGC	2 cut(s)	13, 16
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	240, 263
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	240, 263
PspN4I	GGNNCC	3 cut(s)	262, 284, 309
PspPI	GGNCC	2 cut(s)	260, 308
PspPPI	RGGWCCY	1 cut(s)	260
RsaI	GTAC	2 cut(s)	139, 239
RsaNI	GTAC	2 cut(s)	138, 238
SatI	GCNGC	2 cut(s)	12, 15
Sau96I	GGNCC	2 cut(s)	260, 308
ScrFI	CCNGG	2 cut(s)	242, 265
SetI	ASST	6 cut(s)	13, 74, 246, 262, 329, 357
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	260, 308
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SsiI	CCGC	2 cut(s)	58, 125
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	240, 263
TaaI	ACNGT	2 cut(s)	121, 233
TaqI	TCGA	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	93, 194
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	2 cut(s)	11, 14
TspDTI	ATGAA	3 cut(s)	63, 92, 319
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	260, 308
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.