Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

99006 .. 102388

Gene Structure 3383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001354.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgaaagcggatgagaagccgagctggggtttggtgtcaccgtccggagtggcctatcatttcggtacgagtggactttccgttgcggtggctaccgcagtcactcaccctttagatgtgctcaaagttaggctgcaaatgcaacttgttgggcagaaagggagaatgaaagcggatgagaagccgagctggggtttggtgtcaccgtccggagtggcctatcatttcggtacgagtggactttccgttgcggtggctaccgcagtcactcaccctttagatgtgctcaaagttaggctgcaaatgcaacttgttgggcagaaaggtcctctaactggaatgggacaattgtttcttcaagttcttaagaatgaaggaccaagatttttgtatctgggattgacacctgcattgacaaggtctgttctttatggaggtctccgtttaggcttgtatgaaccctcaaagtatgcctgcaattgggcgtttgggtccaacaatgtttttgttaagattggatccgcgggatttggtggtgcaattgcaactgcactgacgaatccagttgaggttttgaaggtgcgactacagatgaatccgaacttgaggaaaggtgcagctggagaagtgcgtgcaatcattggtgaagagggagtgaaagctctttggaagggtgttggccctgctatgactagagctgctacattgactgcatcacaacttgcaacctatgacgaaaccaagcggatgttgattaggtggacaccacttgaagaaggattccatctacatctcacctcaagcacagttgcaggcatggtgagtaccctcctgactgcacctgtagacatgataaaaacccgtctcatgctgcaacaggaatctgaaagagttggaagctatagaaatggatttcattgtgcatatcaggtcctgcgtacagaaggcccaagaggtctttacaaggggagccttgcaatgtttgcaagattgggtccacaaacgacaattacttttgtagtctgtgagaagctacgtgagcttgctggattgaaagcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

354

Amino Acids

38.1

Weight (kDa)

9.89

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	524
AccIII	TCCGGA	2 cut(s)	44, 209
AciI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
AclWI	GGATC	2 cut(s)	513, 526
AfaI	GTAC	4 cut(s)	67, 232, 826, 940
AfiI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	359, 577, 773, 1054
AluBI	AGCT	8 cut(s)	24, 189, 620, 662, 698, 900, 1033, 1042
AluI	AGCT	8 cut(s)	24, 189, 620, 662, 698, 900, 1033, 1042
Alw21I	GWGCWC	2 cut(s)	123, 288
Alw26I	GTCTC	2 cut(s)	443, 869
AlwI	GGATC	2 cut(s)	513, 526
AlwNI	CAGNNNCTG	1 cut(s)	934
Aor13HI	TCCGGA	2 cut(s)	44, 209
AoxI	GGCC	4 cut(s)	51, 216, 679, 946
ApeKI	GCWGC	5 cut(s)	133, 298, 617, 698, 871
AspS9I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
AsuHPI	GGTGA	7 cut(s)	30, 98, 195, 263, 656, 787, 832
AvaII	GGWCC	5 cut(s)	326, 377, 492, 931, 995
BamHI	GGATCC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	123, 288
BbvI	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BccI	CCATC	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	443, 869
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	3 cut(s)	587, 843, 901
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
BlsI	GCNGC	5 cut(s)	135, 300, 619, 700, 873
Bme18I	GGWCC	5 cut(s)	326, 377, 492, 931, 995
BmgT120I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
BmiI	GGNNCC	4 cut(s)	493, 520, 971, 996
BmsI	GCATC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	625, 784
BsaAI	YACGTR	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	44, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
Bse1I	ACTGG	2 cut(s)	340, 563
Bse3DI	GCAATG	1 cut(s)	984
BseAI	TCCGGA	2 cut(s)	44, 209
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	16, 181, 753
BseLI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
BseMI	GCAATG	1 cut(s)	984
BseNI	ACTGG	2 cut(s)	340, 563
BseXI	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BseYI	CCCAGC	2 cut(s)	24, 189
BsgI	GTGCAG	3 cut(s)	534, 636, 822
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	4 cut(s)	53, 218, 681, 948
BsiHKAI	GWGCWC	2 cut(s)	123, 288
BsiSI	CCGG	2 cut(s)	45, 210
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
BsmAI	GTCTC	2 cut(s)	443, 869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	4 cut(s)	53, 218, 681, 948
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	123, 288
Bsp13I	TCCGGA	2 cut(s)	44, 209
Bsp143I	GATC	1 cut(s)	518
BspACI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
BspANI	GGCC	4 cut(s)	53, 218, 681, 948
BspEI	TCCGGA	2 cut(s)	44, 209
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	4 cut(s)	493, 520, 971, 996
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	513, 526
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	340, 563
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	518
Bst4CI	ACNGT	3 cut(s)	42, 207, 808
Bst6I	CTCTTC	1 cut(s)	642
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	4 cut(s)	475, 633, 814, 1044
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	16, 181, 753
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	2 cut(s)	443, 869
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
BstSFI	CTRYAG	3 cut(s)	587, 843, 901
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	4 cut(s)	53, 218, 681, 948
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	16, 181, 753
BtsIMutI	CAGTG	1 cut(s)	551
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	475, 633, 814, 1044
CaiI	CAGNNNCTG	1 cut(s)	934
Cfr13I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
Cfr42I	CCGCGG	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	66, 231, 825, 939
CviAII	CATG	3 cut(s)	817, 850, 868
CviQI	GTAC	4 cut(s)	66, 231, 825, 939
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	5 cut(s)	326, 377, 492, 931, 995
EcoO109I	RGGNCCY	2 cut(s)	326, 931
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	3 cut(s)	820, 853, 871
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	816, 849, 867
FauI	CCCGC	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
FokI	GGATG	3 cut(s)	23, 188, 760
Fsp4HI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
GsaI	CCCAGC	2 cut(s)	28, 193
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	4 cut(s)	53, 218, 681, 948
HapII	CCGG	2 cut(s)	45, 210
Hin1II	CATG	3 cut(s)	820, 853, 871
HinfI	GANTC	4 cut(s)	559, 595, 780, 881
HpaII	CCGG	2 cut(s)	45, 210
HphI	GGTGA	7 cut(s)	30, 98, 195, 263, 656, 787, 832
Hpy166II	GTNNAC	5 cut(s)	74, 239, 762, 847, 998
Hpy188I	TCNGA	2 cut(s)	600, 886
Hpy188III	TCNNGA	3 cut(s)	45, 210, 832
Hpy8I	GTNNAC	5 cut(s)	74, 239, 762, 847, 998
HpyAV	CCTTC	5 cut(s)	368, 571, 664, 770, 938
HpyCH4III	ACNGT	3 cut(s)	42, 207, 808
HpyCH4IV	ACGT	1 cut(s)	1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	3 cut(s)	820, 853, 871
Kpn2I	TCCGGA	2 cut(s)	44, 209
KspI	CCGCGG	1 cut(s)	525
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	969
Lsp1109I	GCAGC	5 cut(s)	120, 285, 629, 685, 858
LweI	GCATC	1 cut(s)	722
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	4 cut(s)	36, 100, 201, 265
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	3 cut(s)	347, 659, 785
MfeI	CAATTG	3 cut(s)	347, 478, 540
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	123, 288
MluCI	AATT	4 cut(s)	347, 478, 540, 1008
MmeI	TCCRAC	2 cut(s)	519, 874
MnlI	CCTC	9 cut(s)	339, 428, 472, 562, 600, 643, 808, 839, 947
MroI	TCCGGA	2 cut(s)	44, 209
MseI	TTAA	2 cut(s)	366, 510
MspA1I	CMGCKG	2 cut(s)	524, 620
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	2 cut(s)	45, 210
MunI	CAATTG	3 cut(s)	347, 478, 540
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	3 cut(s)	820, 853, 871
NlaIV	GGNNCC	4 cut(s)	493, 520, 971, 996
NmeAIII	GCCGAG	2 cut(s)	45, 210
NmuCI	GTSAC	4 cut(s)	36, 100, 201, 265
PaqCI	CACCTGC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	559, 595, 780, 881
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	5 cut(s)	135, 300, 619, 700, 873
Ppu21I	YACGTR	1 cut(s)	1037
PpuMI	RGGWCCY	2 cut(s)	326, 931
Psp5II	RGGWCCY	2 cut(s)	326, 931
PspFI	CCCAGC	2 cut(s)	24, 189
PspN4I	GGNNCC	4 cut(s)	493, 520, 971, 996
PspPI	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
PspPPI	RGGWCCY	2 cut(s)	326, 931
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	4 cut(s)	67, 232, 826, 940
RsaNI	GTAC	4 cut(s)	66, 231, 825, 939
SacII	CCGCGG	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	366, 510
SatI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
SduI	GDGCHC	2 cut(s)	123, 288
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	3 cut(s)	587, 843, 901
Sfr303I	CCGCGG	1 cut(s)	525
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	5 cut(s)	326, 377, 492, 931, 995
SmlI	CTYRAG	3 cut(s)	365, 604, 799
SmoI	CTYRAG	3 cut(s)	365, 604, 799
Sse9I	AATT	4 cut(s)	347, 478, 540, 1008
SsiI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
SspMI	CTAG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	42, 207, 808
TaiI	ACGT	1 cut(s)	1039
TasI	AATT	4 cut(s)	347, 478, 540, 1008
TfiI	GAWTC	4 cut(s)	559, 595, 780, 881
Tru1I	TTAA	2 cut(s)	366, 510
Tru9I	TTAA	2 cut(s)	366, 510
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	4 cut(s)	36, 100, 201, 265
TseI	GCWGC	5 cut(s)	133, 298, 617, 698, 871
Tsp45I	GTSAC	4 cut(s)	36, 100, 201, 265
TspDTI	ATGAA	6 cut(s)	17, 182, 387, 471, 608, 905
TspGWI	ACGGA	3 cut(s)	70, 235, 431
TspRI	CASTG	1 cut(s)	558
Tth111I	GACNNNGTC	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	5 cut(s)	326, 377, 492, 931, 995
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.