Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

35807920 .. 35810948

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1275100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCGTTTATTGGGTTAAAGAGGAAGAATCTTGTTAATCCGACGCGTCGTTTCCACATCCTACAGAGTCCTTCCCGTTTCGACATAAGCAAACCGCGGGTCAAACCTCGAAAGTCGGAACGGACGGCAAAATCCGCTCCCGAAAACTCTGGCTTTCAGGTTCCGATGAAAGTAAAGAATGAGAAGCAGAGTTGGTCGGCGGTGTCGCCGTCCGAGGTTGCCTATCATTTCGGCACCAGTGGACTTTCCGTTGCGGCGGCTACGGCAGTGACTCATCCCCTCGATGTTCTCAAAGTTAGGTTGCAAATGCAACTTGTTGGTCAGAAAGGTCCTCTCACTGGAATGGGACGGTTATTTCTCCGTACTTTTAAAAGGGAAGGACCGAGGTTTTTGTACCTGGGATTGACACCGGCATTGACAAGGTCTGTTCTTTATGGGGGTCTCCGTTTAGGCTTGTATGAACCTTCAAAGTATACCTGCAATTGGGCTTTTGGATCCGCCAATCTTTTTGCTAAGATCGGGTCTGCAGGATTTGGCGGGGCAATTGCAACTGCGTTGACGAATCCAGTTGAGGTTTTGAAGGTGCGGTTACAGATGAATCCAAACTTGAGTCCAGCGGGAGAACTGCGTAGAATTGTTACCGAAGAGGGAGTGAAAGCTCTTTGGAAGGGGGTTGGCCCTGCTATGGCCAGAGCTGCTACGTTGACTGCATCACAACTAGCTACATATGATGAAACCAAGCGGATACTGATTAGGTTGACATCACTGGAAGAAGGATTCCATCTTCATCTCATCTCAAGCACAGTTGCGGGCATGGTGTGTACGCTCATAACTGCACCCGTGGACATGATAAAAACCCGTCTCATGTTACAACAGGAATCTAGAAAGGCTGGAAACTACAAAAATGGGTTCCACTGTGCGTACCAGGTTATGCTTACGGAAGGTCCCAGGGGTCTTTACAAAGGGAGCCTTGCAACGTTTGCAAGACTGGGTCCACAAACTACAATCACCTTCATACTCTGCGAGAAGTTGCGTGAGCTTGCCGGATTGAACGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

354

Amino Acids

38.67

Weight (kDa)

10.32

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	71 - 157	7.7e-17	Mitochondrial carrier protein
Mito_carr	PF00153	168 - 251	1.5e-19	Mitochondrial carrier protein
Mito_carr	PF00153	260 - 347	1.8e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	2 cut(s)	46, 97
AclI	AACGTT	1 cut(s)	977
AclWI	GGATC	2 cut(s)	489, 502
AcoI	YGGCCR	1 cut(s)	687
AfaI	GTAC	4 cut(s)	364, 395, 823, 923
AfiI	CCNNNNNNNGG	3 cut(s)	338, 483, 685
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	468, 580, 1051
AjnI	CCWGG	3 cut(s)	396, 924, 947
AluBI	AGCT	4 cut(s)	659, 695, 722, 1039
AluI	AGCT	4 cut(s)	659, 695, 722, 1039
Alw26I	GTCTC	2 cut(s)	446, 866
AlwI	GGATC	2 cut(s)	489, 502
AoxI	GGCC	2 cut(s)	676, 687
ApeKI	GCWGC	1 cut(s)	695
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspS9I	GGNCC	5 cut(s)	329, 380, 677, 944, 992
AsuHPI	GGTGA	1 cut(s)	1000
AvaII	GGWCC	4 cut(s)	329, 380, 944, 992
BalI	TGGCCA	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	1 cut(s)	789
BceAI	ACGGC	3 cut(s)	141, 193, 279
BciT130I	CCWGG	3 cut(s)	398, 926, 949
BciVI	GTATCC	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	446, 866
BfaI	CTAG	2 cut(s)	719, 882
BfmI	CTRYAG	2 cut(s)	62, 525
BfuAI	ACCTGC	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	3 cut(s)	255, 258, 696
BlsI	GCNGC	3 cut(s)	256, 259, 697
Bme1390I	CCNGG	3 cut(s)	398, 926, 949
Bme18I	GGWCC	4 cut(s)	329, 380, 944, 992
BmgT120I	GGNCC	5 cut(s)	329, 380, 677, 944, 992
BmiI	GGNNCC	7 cut(s)	162, 235, 496, 911, 946, 968, 993
BmrFI	CCNGG	3 cut(s)	398, 926, 949
BmrI	ACTGGG	1 cut(s)	998
BmsI	GCATC	1 cut(s)	719
BmuI	ACTGGG	1 cut(s)	998
BpuEI	CTTGAG	2 cut(s)	628, 781
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	7 cut(s)	95, 213, 383, 397, 840, 947, 948
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 483, 685
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	5 cut(s)	237, 343, 566, 771, 993
BseBI	CCWGG	3 cut(s)	398, 926, 949
BseDI	CCNNGG	7 cut(s)	95, 213, 383, 397, 840, 947, 948
BseGI	GGATG	2 cut(s)	57, 274
BseLI	CCNNNNNNNGG	3 cut(s)	338, 483, 685
BseNI	ACTGG	5 cut(s)	237, 343, 566, 771, 993
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	819
Bsh1236I	CGCG	2 cut(s)	46, 97
BshFI	GGCC	2 cut(s)	678, 689
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	410, 1044
BslFI	GGGAC	2 cut(s)	360, 930
BslI	CCNNNNNNNGG	3 cut(s)	338, 483, 685
BsmAI	GTCTC	2 cut(s)	446, 866
BsmBI	CGTCTC	1 cut(s)	866
BsmFI	GGGAC	2 cut(s)	360, 930
BsnI	GGCC	2 cut(s)	678, 689
Bso31I	GGTCTC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	494, 516
BspANI	GGCC	2 cut(s)	678, 689
BspFNI	CGCG	2 cut(s)	46, 97
BspLI	GGNNCC	7 cut(s)	162, 235, 496, 911, 946, 968, 993
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	489, 502
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	5 cut(s)	237, 343, 566, 771, 993
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	7 cut(s)	95, 213, 383, 397, 840, 947, 948
BssMI	GATC	2 cut(s)	494, 516
BssNAI	GTATAC	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	398, 926, 949
Bst4CI	ACNGT	3 cut(s)	351, 805, 917
Bst6I	CTCTTC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	811, 1041
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	2 cut(s)	95, 840
BstF5I	GGATG	2 cut(s)	57, 274
BstFNI	CGCG	2 cut(s)	46, 97
BstKTI	GATC	2 cut(s)	497, 519
BstMAI	GTCTC	2 cut(s)	446, 866
BstMBI	GATC	2 cut(s)	494, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 263, 695, 980
BstNI	CCWGG	3 cut(s)	398, 926, 949
BstSCI	CCNGG	3 cut(s)	396, 924, 947
BstSFI	CTRYAG	2 cut(s)	62, 525
BstUI	CGCG	2 cut(s)	46, 97
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZ17I	GTATAC	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	678, 689
BtgI	CCRYGG	2 cut(s)	95, 840
BtsCI	GGATG	2 cut(s)	57, 274
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	5 cut(s)	244, 273, 336, 764, 913
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	811, 1041
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	5 cut(s)	329, 380, 677, 944, 992
Cfr42I	CCGCGG	1 cut(s)	98
CseI	GACGC	2 cut(s)	35, 52
CsiI	ACCWGGT	1 cut(s)	924
Csp6I	GTAC	4 cut(s)	363, 394, 822, 922
CviAII	CATG	3 cut(s)	814, 847, 865
CviQI	GTAC	4 cut(s)	363, 394, 822, 922
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	496, 518
DpnII	GATC	2 cut(s)	494, 516
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	4 cut(s)	329, 380, 944, 992
EcoO109I	RGGNCCY	2 cut(s)	329, 944
EcoRII	CCWGG	3 cut(s)	396, 924, 947
Esp3I	CGTCTC	1 cut(s)	866
FaeI	CATG	3 cut(s)	817, 850, 868
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FaqI	GGGAC	2 cut(s)	360, 930
FatI	CATG	3 cut(s)	813, 846, 864
FauI	CCCGC	4 cut(s)	90, 530, 610, 802
FauNDI	CATATG	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	3 cut(s)	255, 258, 696
FokI	GGATG	2 cut(s)	44, 261
Fsp4HI	GCNGC	3 cut(s)	255, 258, 696
FspBI	CTAG	2 cut(s)	719, 882
GluI	GCNGC	3 cut(s)	255, 258, 696
HaeIII	GGCC	2 cut(s)	678, 689
HapII	CCGG	2 cut(s)	410, 1044
HgaI	GACGC	2 cut(s)	35, 52
Hin1II	CATG	3 cut(s)	817, 850, 868
HincII	GTYRAC	3 cut(s)	558, 705, 759
HindII	GTYRAC	3 cut(s)	558, 705, 759
HinfI	GANTC	8 cut(s)	28, 67, 271, 562, 598, 610, 777, 878
HpaII	CCGG	2 cut(s)	410, 1044
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	8 cut(s)	242, 474, 558, 705, 759, 822, 844, 995
Hpy188I	TCNGA	5 cut(s)	42, 118, 165, 214, 324
Hpy188III	TCNNGA	2 cut(s)	140, 882
Hpy8I	GTNNAC	8 cut(s)	242, 474, 558, 705, 759, 822, 844, 995
Hpy99I	CGWCG	2 cut(s)	46, 51
HpyAV	CCTTC	8 cut(s)	81, 371, 474, 574, 661, 767, 935, 1021
HpyCH4III	ACNGT	3 cut(s)	351, 805, 917
HpyCH4IV	ACGT	2 cut(s)	701, 977
HpyCH4V	TGCA	9 cut(s)	304, 310, 480, 527, 548, 710, 836, 974, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 263, 695, 980
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	701, 977
Hsp92II	CATG	3 cut(s)	817, 850, 868
KspI	CCGCGG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	494, 516
LmnI	GCTCC	2 cut(s)	142, 966
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	719
MabI	ACCWGGT	1 cut(s)	924
MaeI	CTAG	2 cut(s)	719, 882
MaeII	ACGT	2 cut(s)	701, 977
MaeIII	GTNAC	4 cut(s)	268, 588, 637, 867
MalI	GATC	2 cut(s)	496, 518
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	494, 516
MboII	GAAGA	4 cut(s)	37, 656, 776, 782
MfeI	CAATTG	2 cut(s)	481, 543
MflI	RGATCY	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	3 cut(s)	481, 543, 633
MluI	ACGCGT	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	3 cut(s)	76, 265, 619
MmeI	TCCRAC	2 cut(s)	65, 96
MnlI	CCTC	8 cut(s)	15, 117, 208, 290, 342, 378, 565, 640
Mox20I	TGGCCA	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	3 cut(s)	17, 36, 369
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	2 cut(s)	97, 617
MspI	CCGG	2 cut(s)	410, 1044
MspR9I	CCNGG	3 cut(s)	398, 926, 949
MunI	CAATTG	2 cut(s)	481, 543
MvaI	CCWGG	3 cut(s)	398, 926, 949
MvnI	CGCG	2 cut(s)	46, 97
MwoI	GCNNNNNNNGC	4 cut(s)	134, 263, 695, 980
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	2 cut(s)	494, 516
NlaIII	CATG	3 cut(s)	817, 850, 868
NlaIV	GGNNCC	7 cut(s)	162, 235, 496, 911, 946, 968, 993
NmuCI	GTSAC	1 cut(s)	268
PasI	CCCWGGG	1 cut(s)	948
PfeI	GAWTC	5 cut(s)	28, 562, 598, 777, 878
PflFI	GACNNNGTC	2 cut(s)	421, 990
PkrI	GCNGC	3 cut(s)	256, 259, 697
PleI	GAGTC	3 cut(s)	75, 265, 618
PpsI	GAGTC	3 cut(s)	75, 265, 618
PpuMI	RGGWCCY	2 cut(s)	329, 944
Psp1406I	AACGTT	1 cut(s)	977
Psp5II	RGGWCCY	2 cut(s)	329, 944
Psp6I	CCWGG	3 cut(s)	396, 924, 947
PspGI	CCWGG	3 cut(s)	396, 924, 947
PspN4I	GGNNCC	7 cut(s)	162, 235, 496, 911, 946, 968, 993
PspPI	GGNCC	5 cut(s)	329, 380, 677, 944, 992
PspPPI	RGGWCCY	2 cut(s)	329, 944
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	494
PsyI	GACNNNGTC	2 cut(s)	421, 990
RsaI	GTAC	4 cut(s)	364, 395, 823, 923
RsaNI	GTAC	4 cut(s)	363, 394, 822, 922
RseI	CAYNNNNRTG	1 cut(s)	341
SacII	CCGCGG	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	17, 36, 369
SatI	GCNGC	3 cut(s)	255, 258, 696
Sau3AI	GATC	2 cut(s)	494, 516
Sau96I	GGNCC	5 cut(s)	329, 380, 677, 944, 992
SchI	GAGTC	3 cut(s)	76, 265, 619
ScrFI	CCNGG	3 cut(s)	398, 926, 949
SexAI	ACCWGGT	1 cut(s)	924
SfaNI	GCATC	1 cut(s)	719
SfcI	CTRYAG	2 cut(s)	62, 525
Sfr303I	CCGCGG	1 cut(s)	98
SgrBI	CCGCGG	1 cut(s)	98
SinI	GGWCC	4 cut(s)	329, 380, 944, 992
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	607, 796
SmoI	CTYRAG	2 cut(s)	607, 796
Sse9I	AATT	3 cut(s)	481, 543, 633
SspMI	CTAG	2 cut(s)	719, 882
StyD4I	CCNGG	3 cut(s)	396, 924, 947
TaaI	ACNGT	3 cut(s)	351, 805, 917
TaiI	ACGT	2 cut(s)	704, 980
TaqI	TCGA	3 cut(s)	81, 109, 282
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	481, 543, 633
TauI	GCSGC	2 cut(s)	257, 260
TfiI	GAWTC	5 cut(s)	28, 562, 598, 777, 878
Tru1I	TTAA	3 cut(s)	17, 36, 369
Tru9I	TTAA	3 cut(s)	17, 36, 369
TscAI	CASTG	5 cut(s)	244, 273, 343, 771, 920
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	6 cut(s)	182, 474, 611, 747, 776, 1003
TspGWI	ACGGA	5 cut(s)	136, 238, 350, 434, 953
TspRI	CASTG	5 cut(s)	244, 273, 343, 771, 920
Tth111I	GACNNNGTC	2 cut(s)	421, 990
VpaK11BI	GGWCC	4 cut(s)	329, 380, 944, 992
XbaI	TCTAGA	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	473
XspI	CTAG	2 cut(s)	719, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.