Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Forward (+)

14609173 .. 14612910

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTTCTCAAAAGCCCAAAATGGAGTGTACGAAACGACGTGTCGTTTATCATTTTGGCGGAAGAGGATATAAAAACCGATGCGTCGTTTTCTCATCCGAATTTTCTTATTCGGACAGGGCGGCGAAAAGTCAAAGAGAGCTCCAAATTTGAGGGAGAGAAACTCGGAAGCTCAAATCAGCGTCCGGAAAATCTGGGTTTTGGTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGTTGGGGTTTGGTGTCACCGTCCGGGGTGGCCTATCATTTCGGTACAAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTAACTCACCCTCTAGATGTCCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTTACTGGAATGGGACGATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTAACGCCTGCATTGACAAGGTCCGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATAGGATCCGCAGGATTTGGTGGTGCAATCGCAACTGCACTGACAAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGACGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGGCTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCACAGTGAGTACCCTCCTGACAGCACCTGTAGACATGATAAAAACCCGTCTTATGCTGCAACGGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTGTAGTCTGTGAGCAGCTACAGCCAGCTGAAGTTCCAAATCATCAGACCACCATTGCCACCCGAGCAAATGTAAGCTCATGTATCTTTACCACCTCAAGGACTGCTCTGCAGAATGAAATTATGTGTTCTCTGACCCAGTTTCAGGTGCTTAGAGGGTCAATATTTCTTGCCTACGTCTCAATGGATGGTGCAGTTGTGAATGACCAGCCAACTGAAGCAAGTTTCCTAGTGGAATTAGCAATTACAGAAGACCCGCGGCAGTTGGGGTTTTGCAGGCCAAGTGATAAATTGTGGACTTTCCAGCAGATGAATGATGATGAATATATAGATAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

468

Amino Acids

51.26

Weight (kDa)

9.33

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	87 - 172	2.7e-17	Mitochondrial carrier protein
Mito_carr	PF00153	183 - 268	3.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	277 - 362	1.7e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	1 cut(s)	1321
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	9 cut(s)	59, 121, 221, 299, 309, 570, 793, 1319, 1321
AclWI	GGATC	2 cut(s)	561, 574
AcsI	RAATTY	2 cut(s)	100, 146
AcuI	CTGAAG	2 cut(s)	1113, 1299
AfaI	GTAC	4 cut(s)	30, 280, 874, 988
AfiI	CCNNNNNNNGG	6 cut(s)	239, 383, 528, 736, 1161, 1207
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	407, 625, 821
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	9 cut(s)	141, 171, 668, 710, 746, 948, 1081, 1091, 1140
AluI	AGCT	9 cut(s)	141, 171, 668, 710, 746, 948, 1081, 1091, 1140
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	491, 1246
AlwI	GGATC	2 cut(s)	561, 574
AlwNI	CAGNNNCTG	2 cut(s)	890, 982
Ama87I	CYCGRG	1 cut(s)	1125
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	4 cut(s)	264, 727, 994, 1340
ApeKI	GCWGC	5 cut(s)	346, 665, 746, 919, 1078
ApoI	RAATTY	2 cut(s)	100, 146
AspS9I	GGNCC	8 cut(s)	374, 425, 468, 540, 728, 979, 995, 1043
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	4 cut(s)	243, 311, 704, 835
AvaI	CYCGRG	1 cut(s)	1125
AvaII	GGWCC	6 cut(s)	374, 425, 468, 540, 979, 1043
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	1320
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	5 cut(s)	333, 677, 733, 906, 1090
BccI	CCATC	2 cut(s)	840, 1244
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	491, 1246
BfaI	CTAG	3 cut(s)	326, 741, 1292
BfmI	CTRYAG	5 cut(s)	635, 891, 949, 1082, 1172
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	7 cut(s)	122, 347, 666, 747, 920, 1079, 1322
BlsI	GCNGC	7 cut(s)	123, 348, 667, 748, 921, 1080, 1323
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	6 cut(s)	374, 425, 468, 540, 979, 1043
BmeT110I	CYCGRG	1 cut(s)	1125
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	8 cut(s)	374, 425, 468, 540, 728, 979, 995, 1043
BmiI	GGNNCC	4 cut(s)	541, 568, 1019, 1044
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	1195
BmsI	GCATC	2 cut(s)	70, 770
BmuI	ACTGGG	1 cut(s)	1195
BpiI	GAAGAC	1 cut(s)	1320
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	832, 1144
BpuMI	CCSGG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	258, 1319
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	6 cut(s)	239, 383, 528, 736, 1161, 1207
Bse1I	ACTGG	3 cut(s)	388, 611, 1201
Bse3DI	GCAATG	2 cut(s)	1032, 1116
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	258, 1319
BseGI	GGATG	4 cut(s)	94, 229, 801, 1255
BseLI	CCNNNNNNNGG	6 cut(s)	239, 383, 528, 736, 1161, 1207
BseMI	GCAATG	2 cut(s)	1032, 1116
BseNI	ACTGG	3 cut(s)	388, 611, 1201
BseXI	GCAGC	5 cut(s)	333, 677, 733, 906, 1090
BsgI	GTGCAG	3 cut(s)	582, 684, 1275
Bsh1236I	CGCG	1 cut(s)	1321
BshFI	GGCC	4 cut(s)	266, 729, 996, 1342
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	1125
BsiSI	CCGG	2 cut(s)	185, 258
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	6 cut(s)	239, 383, 528, 736, 1161, 1207
BsmAI	GTCTC	2 cut(s)	491, 1246
BsmBI	CGTCTC	1 cut(s)	1246
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	4 cut(s)	266, 729, 996, 1342
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	1125
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	566
BspACI	CCGC	9 cut(s)	59, 121, 221, 299, 309, 570, 793, 1319, 1321
BspANI	GGCC	4 cut(s)	266, 729, 996, 1342
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	1321
BspLI	GGNNCC	4 cut(s)	541, 568, 1019, 1044
BspMAI	CTGCAG	1 cut(s)	1176
BspPI	GGATC	2 cut(s)	561, 574
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	1032, 1116
BsrI	ACTGG	3 cut(s)	388, 611, 1201
BssECI	CCNNGG	2 cut(s)	258, 1319
BssMI	GATC	1 cut(s)	566
Bst4CI	ACNGT	3 cut(s)	255, 856, 868
Bst6I	CTCTTC	2 cut(s)	57, 690
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstC8I	GCNNGC	6 cut(s)	456, 523, 681, 862, 1089, 1340
BstDEI	CTNAG	1 cut(s)	1214
BstDSI	CCRYGG	1 cut(s)	1319
BstF5I	GGATG	4 cut(s)	94, 229, 801, 1255
BstFNI	CGCG	1 cut(s)	1321
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	491, 1246
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	5 cut(s)	352, 746, 1031, 1084, 1127
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	5 cut(s)	635, 891, 949, 1082, 1172
BstUI	CGCG	1 cut(s)	1321
BstV1I	GCAGC	5 cut(s)	333, 677, 733, 906, 1090
BstV2I	GAAGAC	1 cut(s)	1320
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	266, 729, 996, 1342
BtgI	CCRYGG	1 cut(s)	1319
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	94, 229, 801, 1255
BtsIMutI	CAGTG	2 cut(s)	599, 873
Cac8I	GCNNGC	6 cut(s)	456, 523, 681, 862, 1089, 1340
CaiI	CAGNNNCTG	2 cut(s)	890, 982
Cfr13I	GGNCC	8 cut(s)	374, 425, 468, 540, 728, 979, 995, 1043
Cfr42I	CCGCGG	1 cut(s)	1322
CseI	GACGC	2 cut(s)	72, 170
Csp6I	GTAC	4 cut(s)	29, 279, 873, 987
CviAII	CATG	2 cut(s)	898, 1143
CviQI	GTAC	4 cut(s)	29, 279, 873, 987
DdeI	CTNAG	1 cut(s)	1214
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	57, 690
EarI	CTCTTC	2 cut(s)	57, 690
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	6 cut(s)	374, 425, 468, 540, 979, 1043
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	1113, 1299
Eco88I	CYCGRG	1 cut(s)	1125
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	2 cut(s)	374, 979
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	1246
FaeI	CATG	2 cut(s)	901, 1146
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	897, 1142
FauI	CCCGC	1 cut(s)	1326
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	7 cut(s)	122, 347, 666, 747, 920, 1079, 1322
FokI	GGATG	4 cut(s)	81, 236, 808, 1262
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	7 cut(s)	122, 347, 666, 747, 920, 1079, 1322
FspBI	CTAG	3 cut(s)	326, 741, 1292
GluI	GCNGC	7 cut(s)	122, 347, 666, 747, 920, 1079, 1322
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	266, 729, 996, 1342
HapII	CCGG	2 cut(s)	185, 258
HgaI	GACGC	2 cut(s)	72, 170
Hin1II	CATG	2 cut(s)	901, 1146
HinfI	GANTC	3 cut(s)	643, 828, 929
HpaII	CCGG	2 cut(s)	185, 258
HphI	GGTGA	4 cut(s)	243, 311, 704, 835
Hpy166II	GTNNAC	6 cut(s)	29, 287, 810, 895, 1046, 1359
Hpy188I	TCNGA	7 cut(s)	99, 114, 167, 648, 934, 1110, 1197
Hpy188III	TCNNGA	3 cut(s)	185, 326, 880
Hpy8I	GTNNAC	6 cut(s)	29, 287, 810, 895, 1046, 1359
Hpy99I	CGWCG	2 cut(s)	41, 88
HpyAV	CCTTC	5 cut(s)	416, 619, 712, 818, 986
HpyCH4III	ACNGT	3 cut(s)	255, 856, 868
HpyCH4IV	ACGT	2 cut(s)	39, 1239
HpyF10VI	GCNNNNNNNGC	5 cut(s)	352, 746, 1031, 1084, 1127
HpyF3I	CTNAG	1 cut(s)	1214
HpySE526I	ACGT	2 cut(s)	39, 1239
Hsp92II	CATG	2 cut(s)	901, 1146
Kpn2I	TCCGGA	1 cut(s)	184
KspI	CCGCGG	1 cut(s)	1322
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	146, 1017
Lsp1109I	GCAGC	5 cut(s)	333, 677, 733, 906, 1090
LweI	GCATC	2 cut(s)	70, 770
MaeI	CTAG	3 cut(s)	326, 741, 1292
MaeII	ACGT	2 cut(s)	39, 1239
MaeIII	GTNAC	2 cut(s)	249, 313
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	5 cut(s)	74, 395, 707, 833, 1325
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	8 cut(s)	100, 146, 526, 1056, 1182, 1298, 1305, 1352
MmeI	TCCRAC	2 cut(s)	567, 922
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	3 cut(s)	414, 449, 558
MspA1I	CMGCKG	3 cut(s)	668, 1091, 1321
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	2 cut(s)	185, 258
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	1321
MwoI	GCNNNNNNNGC	5 cut(s)	352, 746, 1031, 1084, 1127
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	2 cut(s)	901, 1146
NlaIV	GGNNCC	4 cut(s)	541, 568, 1019, 1044
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	643, 828, 929
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	7 cut(s)	123, 348, 667, 748, 921, 1080, 1323
PpuMI	RGGWCCY	2 cut(s)	374, 979
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	2 cut(s)	374, 979
PspN4I	GGNNCC	4 cut(s)	541, 568, 1019, 1044
PspPI	GGNCC	8 cut(s)	374, 425, 468, 540, 728, 979, 995, 1043
PspPPI	RGGWCCY	2 cut(s)	374, 979
PstI	CTGCAG	1 cut(s)	1176
PstNI	CAGNNNCTG	2 cut(s)	890, 982
PsuI	RGATCY	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	466
PvuII	CAGCTG	2 cut(s)	668, 1091
RsaI	GTAC	4 cut(s)	30, 280, 874, 988
RsaNI	GTAC	4 cut(s)	29, 279, 873, 987
SacI	GAGCTC	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	1322
SaqAI	TTAA	3 cut(s)	414, 449, 558
SatI	GCNGC	7 cut(s)	122, 347, 666, 747, 920, 1079, 1322
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	8 cut(s)	374, 425, 468, 540, 728, 979, 995, 1043
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	70, 770
SfcI	CTRYAG	5 cut(s)	635, 891, 949, 1082, 1172
Sfr303I	CCGCGG	1 cut(s)	1322
SgrBI	CCGCGG	1 cut(s)	1322
SinI	GGWCC	6 cut(s)	374, 425, 468, 540, 979, 1043
SmlI	CTYRAG	3 cut(s)	413, 847, 1159
SmoI	CTYRAG	3 cut(s)	413, 847, 1159
Sse9I	AATT	8 cut(s)	100, 146, 526, 1056, 1182, 1298, 1305, 1352
SsiI	CCGC	9 cut(s)	59, 121, 221, 299, 309, 570, 793, 1319, 1321
SspI	AATATT	1 cut(s)	1227
SspMI	CTAG	3 cut(s)	326, 741, 1292
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	255, 856, 868
TaiI	ACGT	2 cut(s)	42, 1242
TasI	AATT	8 cut(s)	100, 146, 526, 1056, 1182, 1298, 1305, 1352
TauI	GCSGC	2 cut(s)	124, 1324
TfiI	GAWTC	3 cut(s)	643, 828, 929
Tru1I	TTAA	3 cut(s)	414, 449, 558
Tru9I	TTAA	3 cut(s)	414, 449, 558
TscAI	CASTG	2 cut(s)	606, 873
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	5 cut(s)	346, 665, 746, 919, 1078
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	8 cut(s)	230, 435, 519, 656, 953, 1194, 1388, 1398
TspGWI	ACGGA	3 cut(s)	283, 460, 479
TspRI	CASTG	2 cut(s)	606, 873
Tth111I	GACNNNGTC	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	6 cut(s)	374, 425, 468, 540, 979, 1043
XapI	RAATTY	2 cut(s)	100, 146
XbaI	TCTAGA	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	3 cut(s)	326, 741, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.