Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

57833172 .. 57835813

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG347500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGGCGGCGAAAAGTCAAGAGAGAGCTCCGAGTTTGAGGGAGAGAAACTCGGAAGCTCAAATCTGCGTCCGGAAAATCTGGGTTTTGGTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGTTGGGGTTTGGTGTCACCGTCCGGGGTGGCCTATCATTTCGGTACAAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTAACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACGATTGTTTCTTCGAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACGCCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATCGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGGCTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACAGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACGGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATTTCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTGTAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

333

Amino Acids

35.98

Weight (kDa)

9.88

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	50 - 135	1.7e-17	Mitochondrial carrier protein
Mito_carr	PF00153	146 - 231	2.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	240 - 327	3.8e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	7 cut(s)	9, 110, 188, 198, 459, 461, 682
AclWI	GGATC	2 cut(s)	450, 463
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	3 cut(s)	169, 763, 877
AfiI	CCNNNNNNNGG	4 cut(s)	128, 272, 417, 625
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	514, 710, 991
AluBI	AGCT	8 cut(s)	30, 60, 557, 599, 635, 837, 970, 979
AluI	AGCT	8 cut(s)	30, 60, 557, 599, 635, 837, 970, 979
Alw21I	GWGCWC	2 cut(s)	32, 225
Alw26I	GTCTC	2 cut(s)	380, 806
AlwI	GGATC	2 cut(s)	450, 463
AlwNI	CAGNNNCTG	2 cut(s)	779, 871
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	3 cut(s)	153, 616, 883
ApeKI	GCWGC	4 cut(s)	235, 554, 635, 808
AspS9I	GGNCC	7 cut(s)	263, 314, 429, 617, 868, 884, 932
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	5 cut(s)	132, 200, 593, 724, 769
AvaII	GGWCC	5 cut(s)	263, 314, 429, 868, 932
BamHI	GGATCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 225
BbvI	GCAGC	4 cut(s)	222, 566, 622, 795
BccI	CCATC	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	380, 806
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	3 cut(s)	524, 780, 838
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	5 cut(s)	10, 236, 555, 636, 809
BlsI	GCNGC	5 cut(s)	11, 237, 556, 637, 810
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	5 cut(s)	263, 314, 429, 868, 932
BmgT120I	GGNCC	7 cut(s)	263, 314, 429, 617, 868, 884, 932
BmiI	GGNNCC	4 cut(s)	430, 457, 908, 933
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	562, 721
BpuMI	CCSGG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	974
BsaHI	GRCGYC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	147, 459
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 272, 417, 625
Bse1I	ACTGG	2 cut(s)	277, 500
Bse3DI	GCAATG	1 cut(s)	921
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	147, 459
BseGI	GGATG	2 cut(s)	118, 690
BseLI	CCNNNNNNNGG	4 cut(s)	128, 272, 417, 625
BseMI	GCAATG	1 cut(s)	921
BseNI	ACTGG	2 cut(s)	277, 500
BseXI	GCAGC	4 cut(s)	222, 566, 622, 795
BsgI	GTGCAG	2 cut(s)	471, 573
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	155, 618, 885
BsiHKAI	GWGCWC	2 cut(s)	32, 225
BsiSI	CCGG	2 cut(s)	74, 147
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	128, 272, 417, 625
BsmAI	GTCTC	2 cut(s)	380, 806
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	155, 618, 885
Bso31I	GGTCTC	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	32, 225
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	455
BspACI	CCGC	7 cut(s)	9, 110, 188, 198, 459, 461, 682
BspANI	GGCC	3 cut(s)	155, 618, 885
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	4 cut(s)	430, 457, 908, 933
BspPI	GGATC	2 cut(s)	450, 463
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	2 cut(s)	277, 500
BssECI	CCNNGG	2 cut(s)	147, 459
BssMI	GATC	1 cut(s)	455
BssNI	GRCGYC	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	144, 745
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	341
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	5 cut(s)	345, 412, 570, 751, 981
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	118, 690
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	1 cut(s)	458
BstMAI	GTCTC	2 cut(s)	380, 806
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 635, 920, 976
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	3 cut(s)	524, 780, 838
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	222, 566, 622, 795
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	155, 618, 885
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	118, 690
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	5 cut(s)	345, 412, 570, 751, 981
CaiI	CAGNNNCTG	2 cut(s)	779, 871
Cfr13I	GGNCC	7 cut(s)	263, 314, 429, 617, 868, 884, 932
Cfr42I	CCGCGG	1 cut(s)	462
CseI	GACGC	2 cut(s)	59, 349
Csp6I	GTAC	3 cut(s)	168, 762, 876
CviAII	CATG	3 cut(s)	754, 787, 805
CviQI	GTAC	3 cut(s)	168, 762, 876
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	5 cut(s)	263, 314, 429, 868, 932
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	263, 868
EcoT38I	GRGCYC	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	3 cut(s)	757, 790, 808
FaiI	YATR	9 cut(s)	369, 393, 408, 626, 669, 755, 788, 806, 840
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	753, 786, 804
FauI	CCCGC	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	5 cut(s)	10, 236, 555, 636, 809
FokI	GGATG	2 cut(s)	125, 697
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	10, 236, 555, 636, 809
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	5 cut(s)	10, 236, 555, 636, 809
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	155, 618, 885
HapII	CCGG	2 cut(s)	74, 147
HgaI	GACGC	2 cut(s)	59, 349
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	757, 790, 808
HinfI	GANTC	4 cut(s)	496, 532, 717, 818
HpaII	CCGG	2 cut(s)	74, 147
HphI	GGTGA	5 cut(s)	132, 200, 593, 724, 769
Hpy166II	GTNNAC	4 cut(s)	176, 699, 784, 935
Hpy188I	TCNGA	4 cut(s)	34, 56, 537, 823
Hpy188III	TCNNGA	3 cut(s)	21, 74, 769
Hpy8I	GTNNAC	4 cut(s)	176, 699, 784, 935
HpyAV	CCTTC	5 cut(s)	305, 508, 601, 707, 875
HpyCH4III	ACNGT	2 cut(s)	144, 745
HpyCH4IV	ACGT	1 cut(s)	973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 635, 920, 976
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	757, 790, 808
Kpn2I	TCCGGA	1 cut(s)	73
KspI	CCGCGG	1 cut(s)	462
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	2 cut(s)	35, 906
Lsp1109I	GCAGC	4 cut(s)	222, 566, 622, 795
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	2 cut(s)	138, 202
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MboII	GAAGA	3 cut(s)	284, 596, 722
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	32, 225
MluCI	AATT	2 cut(s)	415, 945
MmeI	TCCRAC	2 cut(s)	456, 811
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	303, 447
MspA1I	CMGCKG	2 cut(s)	461, 557
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	74, 147
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	241, 635, 920, 976
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	455
NlaIII	CATG	3 cut(s)	757, 790, 808
NlaIV	GGNNCC	4 cut(s)	430, 457, 908, 933
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	496, 532, 717, 818
PflFI	GACNNNGTC	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	11, 237, 556, 637, 810
Ppu21I	YACGTR	1 cut(s)	974
PpuMI	RGGWCCY	2 cut(s)	263, 868
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	2 cut(s)	263, 868
PspN4I	GGNNCC	4 cut(s)	430, 457, 908, 933
PspPI	GGNCC	7 cut(s)	263, 314, 429, 617, 868, 884, 932
PspPPI	RGGWCCY	2 cut(s)	263, 868
PstNI	CAGNNNCTG	2 cut(s)	779, 871
PsuI	RGATCY	1 cut(s)	455
PsyI	GACNNNGTC	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	3 cut(s)	169, 763, 877
RsaNI	GTAC	3 cut(s)	168, 762, 876
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	303, 447
SatI	GCNGC	5 cut(s)	10, 236, 555, 636, 809
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	7 cut(s)	263, 314, 429, 617, 868, 884, 932
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	32, 225
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	3 cut(s)	524, 780, 838
Sfr303I	CCGCGG	1 cut(s)	462
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	5 cut(s)	263, 314, 429, 868, 932
SmlI	CTYRAG	3 cut(s)	302, 541, 736
SmoI	CTYRAG	3 cut(s)	302, 541, 736
Sse9I	AATT	2 cut(s)	415, 945
SsiI	CCGC	7 cut(s)	9, 110, 188, 198, 459, 461, 682
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	144, 745
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	415, 945
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	4 cut(s)	496, 532, 717, 818
Tru1I	TTAA	2 cut(s)	303, 447
Tru9I	TTAA	2 cut(s)	303, 447
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	4 cut(s)	235, 554, 635, 808
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	5 cut(s)	119, 324, 408, 545, 842
TspGWI	ACGGA	2 cut(s)	172, 368
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	5 cut(s)	263, 314, 429, 868, 932
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.