Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

53688127 .. 53690759

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTTCTCAGAAGCCCAAAATGGAGTGCACGAAACGACGTGTCGTTGATCATTTTTGGCGGAAGAGGATATAAAAACGGATGCGTCGTTTTTGGGATCCGAATTTTCTTATTCGGACAGAGGGCGGCGAAAAGTCAAGAGAGCTCCGAGTTTGAGGGAGAGAAACTCGGAAGCTCAAATCTGCGTCCGGAAAATCTGGGTTTTGGTTCAGGGAGAATGAAAGCGGATGAGAAGCCGAGCTGGGGTTTGGTGTCACCGTCCGGAGTGGCCTATCATTTCGGTACGAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTCACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACAATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACACCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATTGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGACTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACTGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTGTAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

371

Amino Acids

40.24

Weight (kDa)

9.95

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	88 - 173	1.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	184 - 269	4.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	278 - 365	1.1e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	897
AccII	CGCG	1 cut(s)	575
AccIII	TCCGGA	2 cut(s)	187, 260
AciI	CCGC	8 cut(s)	60, 125, 224, 302, 312, 573, 575, 796
AclWI	GGATC	4 cut(s)	91, 104, 564, 577
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	3 cut(s)	283, 877, 991
AfiI	CCNNNNNNNGG	3 cut(s)	242, 386, 531
AflII	CTTAAG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	410, 628, 824, 1105
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	9 cut(s)	144, 174, 240, 671, 713, 749, 951, 1084, 1093
AluI	AGCT	9 cut(s)	144, 174, 240, 671, 713, 749, 951, 1084, 1093
Alw21I	GWGCWC	3 cut(s)	31, 146, 339
Alw26I	GTCTC	2 cut(s)	494, 920
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	4 cut(s)	91, 104, 564, 577
AlwNI	CAGNNNCTG	1 cut(s)	985
Aor13HI	TCCGGA	2 cut(s)	187, 260
AoxI	GGCC	3 cut(s)	267, 730, 997
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	349, 668, 749, 922
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	7 cut(s)	377, 428, 543, 731, 982, 998, 1046
AsuHPI	GGTGA	5 cut(s)	246, 314, 707, 838, 883
AvaII	GGWCC	5 cut(s)	377, 428, 543, 982, 1046
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	2 cut(s)	96, 569
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	3 cut(s)	31, 146, 339
BbvI	GCAGC	4 cut(s)	336, 680, 736, 909
BccI	CCATC	1 cut(s)	843
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	494, 920
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	3 cut(s)	638, 894, 952
BfrI	CTTAAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	126, 350, 669, 750, 923
BlsI	GCNGC	5 cut(s)	127, 351, 670, 751, 924
Bme18I	GGWCC	5 cut(s)	377, 428, 543, 982, 1046
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	7 cut(s)	377, 428, 543, 731, 982, 998, 1046
BmiI	GGNNCC	5 cut(s)	98, 544, 571, 1022, 1047
BmsI	GCATC	2 cut(s)	71, 773
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpmI	CTGGAG	1 cut(s)	693
BpuEI	CTTGAG	2 cut(s)	676, 835
BsaAI	YACGTR	1 cut(s)	1088
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	2 cut(s)	187, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 386, 531
Bse1I	ACTGG	2 cut(s)	391, 614
Bse3DI	GCAATG	1 cut(s)	1035
BseAI	TCCGGA	2 cut(s)	187, 260
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	86, 232, 804
BseLI	CCNNNNNNNGG	3 cut(s)	242, 386, 531
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	391, 614
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	336, 680, 736, 909
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	3 cut(s)	585, 687, 873
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	269, 732, 999
BsiHKAI	GWGCWC	3 cut(s)	31, 146, 339
BsiSI	CCGG	2 cut(s)	188, 261
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	242, 386, 531
BsmAI	GTCTC	2 cut(s)	494, 920
BsmBI	CGTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	269, 732, 999
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	31, 146, 339
Bsp13I	TCCGGA	2 cut(s)	187, 260
Bsp143I	GATC	3 cut(s)	48, 96, 569
BspACI	CCGC	8 cut(s)	60, 125, 224, 302, 312, 573, 575, 796
BspANI	GGCC	3 cut(s)	269, 732, 999
BspCNI	CTCAG	1 cut(s)	21
BspEI	TCCGGA	2 cut(s)	187, 260
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	5 cut(s)	98, 544, 571, 1022, 1047
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	4 cut(s)	91, 104, 564, 577
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	391, 614
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	3 cut(s)	48, 96, 569
Bst4CI	ACNGT	2 cut(s)	258, 859
Bst6I	CTCTTC	2 cut(s)	58, 693
BstAFI	CTTAAG	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	1088
BstC8I	GCNNGC	4 cut(s)	526, 684, 865, 1095
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	86, 232, 804
BstFNI	CGCG	1 cut(s)	575
BstKTI	GATC	3 cut(s)	51, 99, 572
BstMAI	GTCTC	2 cut(s)	494, 920
BstMBI	GATC	3 cut(s)	48, 96, 569
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 1034, 1090
BstSFI	CTRYAG	3 cut(s)	638, 894, 952
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	336, 680, 736, 909
BstX2I	RGATCY	2 cut(s)	96, 569
BstYI	RGATCY	2 cut(s)	96, 569
BsuRI	GGCC	3 cut(s)	269, 732, 999
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	86, 232, 804
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	526, 684, 865, 1095
CaiI	CAGNNNCTG	1 cut(s)	985
Cfr13I	GGNCC	7 cut(s)	377, 428, 543, 731, 982, 998, 1046
Cfr42I	CCGCGG	1 cut(s)	576
CseI	GACGC	2 cut(s)	73, 173
Csp6I	GTAC	3 cut(s)	282, 876, 990
CviAII	CATG	3 cut(s)	868, 901, 919
CviQI	GTAC	3 cut(s)	282, 876, 990
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	3 cut(s)	50, 98, 571
DpnII	GATC	3 cut(s)	48, 96, 569
Eam1104I	CTCTTC	2 cut(s)	58, 693
EarI	CTCTTC	2 cut(s)	58, 693
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	5 cut(s)	377, 428, 543, 982, 1046
Eco53kI	GAGCTC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	377, 982
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	3 cut(s)	871, 904, 922
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	867, 900, 918
FauI	CCCGC	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	5 cut(s)	126, 350, 669, 750, 923
FokI	GGATG	3 cut(s)	93, 239, 811
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	5 cut(s)	126, 350, 669, 750, 923
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	5 cut(s)	126, 350, 669, 750, 923
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	269, 732, 999
HapII	CCGG	2 cut(s)	188, 261
HgaI	GACGC	2 cut(s)	73, 173
Hin1II	CATG	3 cut(s)	871, 904, 922
HinfI	GANTC	4 cut(s)	610, 646, 831, 932
HpaII	CCGG	2 cut(s)	188, 261
HphI	GGTGA	5 cut(s)	246, 314, 707, 838, 883
Hpy166II	GTNNAC	5 cut(s)	29, 290, 813, 898, 1049
Hpy188I	TCNGA	7 cut(s)	11, 101, 116, 148, 170, 651, 937
Hpy188III	TCNNGA	4 cut(s)	137, 188, 261, 883
Hpy8I	GTNNAC	5 cut(s)	29, 290, 813, 898, 1049
Hpy99I	CGWCG	2 cut(s)	41, 89
HpyAV	CCTTC	5 cut(s)	419, 622, 715, 821, 989
HpyCH4III	ACNGT	2 cut(s)	258, 859
HpyCH4IV	ACGT	2 cut(s)	39, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 1034, 1090
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	39, 1087
Hsp92II	CATG	3 cut(s)	871, 904, 922
Kpn2I	TCCGGA	2 cut(s)	187, 260
Ksp22I	TGATCA	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	48, 96, 569
LmnI	GCTCC	2 cut(s)	149, 1020
Lsp1109I	GCAGC	4 cut(s)	336, 680, 736, 909
LweI	GCATC	2 cut(s)	71, 773
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	2 cut(s)	39, 1087
MaeIII	GTNAC	2 cut(s)	252, 316
MalI	GATC	3 cut(s)	50, 98, 571
MboI	GATC	3 cut(s)	48, 96, 569
MboII	GAAGA	4 cut(s)	75, 398, 710, 836
MfeI	CAATTG	3 cut(s)	398, 529, 591
MflI	RGATCY	2 cut(s)	96, 569
MhlI	GDGCHC	3 cut(s)	31, 146, 339
MluCI	AATT	5 cut(s)	102, 398, 529, 591, 1059
MmeI	TCCRAC	2 cut(s)	570, 925
MroI	TCCGGA	2 cut(s)	187, 260
MseI	TTAA	2 cut(s)	417, 561
MspA1I	CMGCKG	2 cut(s)	575, 671
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	2 cut(s)	188, 261
MunI	CAATTG	3 cut(s)	398, 529, 591
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	355, 1034, 1090
NdeII	GATC	3 cut(s)	48, 96, 569
NlaIII	CATG	3 cut(s)	871, 904, 922
NlaIV	GGNNCC	5 cut(s)	98, 544, 571, 1022, 1047
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	252, 316
PaqCI	CACCTGC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	610, 646, 831, 932
PflFI	GACNNNGTC	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	127, 351, 670, 751, 924
Ppu21I	YACGTR	1 cut(s)	1088
PpuMI	RGGWCCY	2 cut(s)	377, 982
Psp124BI	GAGCTC	1 cut(s)	146
Psp5II	RGGWCCY	2 cut(s)	377, 982
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	5 cut(s)	98, 544, 571, 1022, 1047
PspPI	GGNCC	7 cut(s)	377, 428, 543, 731, 982, 998, 1046
PspPPI	RGGWCCY	2 cut(s)	377, 982
PstNI	CAGNNNCTG	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	96, 569
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	283, 877, 991
RsaNI	GTAC	3 cut(s)	282, 876, 990
SacI	GAGCTC	1 cut(s)	146
SacII	CCGCGG	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	417, 561
SatI	GCNGC	5 cut(s)	126, 350, 669, 750, 923
Sau3AI	GATC	3 cut(s)	48, 96, 569
Sau96I	GGNCC	7 cut(s)	377, 428, 543, 731, 982, 998, 1046
SduI	GDGCHC	3 cut(s)	31, 146, 339
SfaNI	GCATC	2 cut(s)	71, 773
SfcI	CTRYAG	3 cut(s)	638, 894, 952
Sfr303I	CCGCGG	1 cut(s)	576
SgrBI	CCGCGG	1 cut(s)	576
SinI	GGWCC	5 cut(s)	377, 428, 543, 982, 1046
SmlI	CTYRAG	3 cut(s)	416, 655, 850
SmoI	CTYRAG	3 cut(s)	416, 655, 850
Sse9I	AATT	5 cut(s)	102, 398, 529, 591, 1059
SsiI	CCGC	8 cut(s)	60, 125, 224, 302, 312, 573, 575, 796
SspMI	CTAG	1 cut(s)	744
SstI	GAGCTC	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	258, 859
TaiI	ACGT	2 cut(s)	42, 1090
TasI	AATT	5 cut(s)	102, 398, 529, 591, 1059
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	4 cut(s)	610, 646, 831, 932
Tru1I	TTAA	2 cut(s)	417, 561
Tru9I	TTAA	2 cut(s)	417, 561
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	2 cut(s)	252, 316
TseI	GCWGC	4 cut(s)	349, 668, 749, 922
Tsp45I	GTSAC	2 cut(s)	252, 316
TspDTI	ATGAA	5 cut(s)	233, 438, 522, 659, 956
TspGWI	ACGGA	3 cut(s)	93, 286, 482
TspRI	CASTG	1 cut(s)	609
Tth111I	GACNNNGTC	1 cut(s)	469
Vha464I	CTTAAG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	5 cut(s)	377, 428, 543, 982, 1046
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	897
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.