Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

41474853 .. 41477128

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1297100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAACTTGTTGGGCAGAAGGGTCCTCTCACTGGAATGGGCCGGTTATTTCTCCATACTTTTAAAAAGGAAGGGCCAAGATTTTTGTATCTGGGATTGACACCGGCATTGACAAGGTCTGTTCTTTATGGGGGTCTTCGTTTAGGCTTGTATGAACCTTCAAAGTATGCCTGCAATTGGGCTTTTGGATCCTCCAATCTTTTTGCTAAGATTGGGTCTGGAGGATTTGCAGGTGCAATTGCAACTGCATTGACGAATCCAGTTGAGGTTTTGAAGGTGCGGTTACAGATGAATCCAAACTTGAGTCCAACAGGAGAACTGCGTAGAATTGTTACTGAAGAGGGAGCGAAAGCGCTTTGGAAGGGGGTTGGCCCTGCTATGGCTAGAGCTGCTATGTTGACTGCATCACAACTAGCAACATATGACGAAACCAAGCTGACACTGATTAGGTTGACATCACTCGAAGAAGGATTCCATCTTCATCTCATCTCAAGCACAGTTGCAGGCTTGGTGAGTACCCTCGTAACTGCACCCGTGGACATGGTAAAAACCCGTCTCATGTTGCAACAGGAATCTAAAAAGGCAGGAAACTATAAAAATGGATTTCATTGCGCATACCAGGTTATGCTTACAGAAGGTCCCAGGGGTCTTTACAAAGGGAGCCTTGCAACTTTTGCAAGACTGGGTCCACAAACTACAATTACCTTCATACTCTGCGAGAAGTTGCGTGAGCTTGCCGGATTGAATGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

252

Amino Acids

27.15

Weight (kDa)

9.83

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	13 - 55	5.7e-06	Mitochondrial carrier protein
Mito_carr	PF00153	65 - 149	4.4e-20	Mitochondrial carrier protein
Mito_carr	PF00153	158 - 245	6.7e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	221
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	183, 196
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	517
AfeI	AGCGCT	1 cut(s)	354
AfiI	CCNNNNNNNGG	3 cut(s)	32, 177, 379
AgsI	TTSAA	3 cut(s)	162, 274, 745
AjnI	CCWGG	2 cut(s)	618, 641
AluBI	AGCT	3 cut(s)	389, 436, 733
AluI	AGCT	3 cut(s)	389, 436, 733
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	183, 196
Aor51HI	AGCGCT	1 cut(s)	354
AoxI	GGCC	3 cut(s)	40, 74, 370
ApeKI	GCWGC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	355, 614
AspS9I	GGNCC	6 cut(s)	23, 40, 74, 371, 638, 686
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	23, 638, 686
BamHI	GGATCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	483
BciT130I	CCWGG	2 cut(s)	620, 643
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	384, 413
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	620, 643
Bme18I	GGWCC	3 cut(s)	23, 638, 686
BmgT120I	GGNCC	6 cut(s)	23, 40, 74, 371, 638, 686
BmiI	GGNNCC	5 cut(s)	24, 190, 640, 662, 687
BmrFI	CCNGG	2 cut(s)	620, 643
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	322, 475
BsaJI	CCNNGG	3 cut(s)	534, 641, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 177, 379
Bse118I	RCCGGY	2 cut(s)	42, 103
Bse1I	ACTGG	3 cut(s)	37, 260, 687
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	620, 643
BseDI	CCNNGG	3 cut(s)	534, 641, 642
BseLI	CCNNNNNNNGG	3 cut(s)	32, 177, 379
BseMI	GCAATG	1 cut(s)	607
BseNI	ACTGG	3 cut(s)	37, 260, 687
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	42, 76, 372
BsiSI	CCGG	3 cut(s)	43, 104, 738
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	3 cut(s)	32, 177, 379
BsmAI	GTCTC	1 cut(s)	560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	624
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	42, 76, 372
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	3 cut(s)	42, 76, 372
BspLI	GGNNCC	5 cut(s)	24, 190, 640, 662, 687
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	2 cut(s)	183, 196
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	2 cut(s)	42, 103
BsrI	ACTGG	3 cut(s)	37, 260, 687
BssAI	RCCGGY	2 cut(s)	42, 103
BssECI	CCNNGG	3 cut(s)	534, 641, 642
BssMI	GATC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	620, 643
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	172, 505, 735
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	355, 614
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 674
BstNI	CCWGG	2 cut(s)	620, 643
BstSCI	CCNGG	2 cut(s)	618, 641
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	42, 76, 372
BtgI	CCRYGG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	30, 440
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	3 cut(s)	172, 505, 735
CfoI	GCGC	2 cut(s)	355, 614
Cfr10I	RCCGGY	2 cut(s)	42, 103
Cfr13I	GGNCC	6 cut(s)	23, 40, 74, 371, 638, 686
CsiI	ACCWGGT	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	541, 559
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
DraI	TTTAAA	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	23, 638, 686
Eco47III	AGCGCT	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	23, 638
EcoRII	CCWGG	2 cut(s)	618, 641
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	2 cut(s)	544, 562
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	540, 558
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	384, 413
FspI	TGCGCA	1 cut(s)	613
GlaI	GCGC	2 cut(s)	354, 613
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	42, 76, 372
HapII	CCGG	3 cut(s)	43, 104, 738
HhaI	GCGC	2 cut(s)	355, 614
Hin1II	CATG	2 cut(s)	544, 562
Hin6I	GCGC	2 cut(s)	353, 612
HinP1I	GCGC	2 cut(s)	353, 612
HincII	GTYRAC	2 cut(s)	399, 453
HindII	GTYRAC	2 cut(s)	399, 453
HinfI	GANTC	5 cut(s)	256, 292, 304, 471, 572
HpaII	CCGG	3 cut(s)	43, 104, 738
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	4 cut(s)	399, 453, 538, 689
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	4 cut(s)	399, 453, 538, 689
HpyAV	CCTTC	8 cut(s)	13, 65, 168, 268, 355, 461, 629, 715
HpyCH4III	ACNGT	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 674
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	544, 562
HspAI	GCGC	2 cut(s)	353, 612
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	344, 660
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	413
MabI	ACCWGGT	1 cut(s)	618
MaeI	CTAG	2 cut(s)	384, 413
MaeIII	GTNAC	3 cut(s)	282, 331, 523
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	4 cut(s)	128, 350, 470, 476
MfeI	CAATTG	2 cut(s)	175, 237
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	4 cut(s)	175, 237, 327, 699
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	36, 202, 215, 259, 334, 530
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	3 cut(s)	43, 104, 738
MspR9I	CCNGG	2 cut(s)	620, 643
MunI	CAATTG	2 cut(s)	175, 237
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	620, 643
MwoI	GCNNNNNNNGC	2 cut(s)	389, 674
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	544, 562
NlaIV	GGNNCC	5 cut(s)	24, 190, 640, 662, 687
NsbI	TGCGCA	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	221
PasI	CCCWGGG	1 cut(s)	642
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	4 cut(s)	256, 292, 471, 572
PflFI	GACNNNGTC	2 cut(s)	115, 684
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	2 cut(s)	23, 638
Psp5II	RGGWCCY	2 cut(s)	23, 638
Psp6I	CCWGG	2 cut(s)	618, 641
PspGI	CCWGG	2 cut(s)	618, 641
PspN4I	GGNNCC	5 cut(s)	24, 190, 640, 662, 687
PspPI	GGNCC	6 cut(s)	23, 40, 74, 371, 638, 686
PspPPI	RGGWCCY	2 cut(s)	23, 638
PsuI	RGATCY	1 cut(s)	188
PsyI	GACNNNGTC	2 cut(s)	115, 684
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	6 cut(s)	23, 40, 74, 371, 638, 686
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	620, 643
SexAI	ACCWGGT	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	3 cut(s)	23, 638, 686
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	301, 490
SmoI	CTYRAG	2 cut(s)	301, 490
Sse9I	AATT	4 cut(s)	175, 237, 327, 699
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	384, 413
StyD4I	CCNGG	2 cut(s)	618, 641
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	462
TasI	AATT	4 cut(s)	175, 237, 327, 699
TfiI	GAWTC	4 cut(s)	256, 292, 471, 572
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	37, 447
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	5 cut(s)	168, 305, 470, 596, 697
TspRI	CASTG	2 cut(s)	37, 447
Tth111I	GACNNNGTC	2 cut(s)	115, 684
VpaK11BI	GGWCC	3 cut(s)	23, 638, 686
XspI	CTAG	2 cut(s)	384, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.