AT4G03540

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008048
Physical Location & Seq
Forward (+)
1569937 .. 1571737
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03540.1

Sequence Viewer

Length: 495 bp
ATGGTGAAGTTGACAAAGAGAATAGGAGGGCTTGTGCTGCGATTGGCAGCGTTTGGTGCGGCTCTTGCCGCATTGATCGTTATGATCACTAGCCGCGAGAGAGCTTCCTTCTTAGCCATCTCCCTTGAAGCTAAGTACACCGATATGGCAGCGTTTAAGTATTTTGTAATAGCAAACGCTGTTGTGAGTGTTTACAGCTTTCTAGTTCTGTTTCTTCCAAAGGAGAGTTTGCTTTGGAAATTCGTCGTCGTCTTGGATTTGGTGATGACAATGCTGCTTACGTCAAGCTTATCGGCGGCTCTAGCGGTGGCACAAGTGGGAAAGAAGGGAAACGCAAACGCAGGTTGGCTTCCGATTTGCGGGCAAGTTCCAAAGTTTTGCGATCAGATCACTGGAGCTTTAATTGCCGGTTTCGTTGCACTCGTCCTCTATGTACTCTTACTCTTATATTCTCTCCACGCCGTCGTCGACCCTTTTCTCCTTCAAAAATCTTGA

Protein Analysis

164

Amino Acids

17.67

Weight (kDa)

9.61

Isoelectric Point (pI)

20.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 143 1.9e-41 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 96
AciI CCGC 6 cut(s) 59, 69, 94, 296, 305, 360
AcsI RAATTY 1 cut(s) 239
AfaI GTAC 2 cut(s) 137, 435
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 128, 485
AluBI AGCT 5 cut(s) 104, 131, 198, 288, 398
AluI AGCT 5 cut(s) 104, 131, 198, 288, 398
ApeKI GCWGC 4 cut(s) 37, 47, 149, 274
ApoI RAATTY 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 16, 274
BbvI GCAGC 4 cut(s) 24, 59, 161, 261
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 446
BclI TGATCA 1 cut(s) 84
BfaI CTAG 3 cut(s) 90, 203, 302
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 8 cut(s) 38, 48, 60, 69, 94, 150, 275, 297
BlsI GCNGC 8 cut(s) 39, 49, 61, 70, 95, 151, 276, 298
BpmI CTGGAG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 4 cut(s) 24, 59, 161, 261
Bsh1236I CGCG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 359
Bsp143I GATC 4 cut(s) 75, 84, 382, 387
BspACI CCGC 6 cut(s) 59, 69, 94, 296, 305, 360
BspFNI CGCG 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 407
BssMI GATC 4 cut(s) 75, 84, 382, 387
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 112, 132
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 4 cut(s) 78, 87, 385, 390
BstMBI GATC 4 cut(s) 75, 84, 382, 387
BstMWI GCNNNNNNNGC 6 cut(s) 37, 56, 65, 68, 302, 404
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 24, 59, 161, 261
BtsIMutI CAGTG 1 cut(s) 390
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 407
Csp6I GTAC 2 cut(s) 136, 434
CviQI GTAC 2 cut(s) 136, 434
DdeI CTNAG 2 cut(s) 112, 132
DpnI GATC 4 cut(s) 77, 86, 384, 389
DpnII GATC 4 cut(s) 75, 84, 382, 387
FaiI YATR 4 cut(s) 83, 146, 432, 448
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 8 cut(s) 38, 48, 60, 69, 94, 150, 275, 297
Fsp4HI GCNGC 8 cut(s) 38, 48, 60, 69, 94, 150, 275, 297
FspBI CTAG 3 cut(s) 90, 203, 302
GluI GCNGC 8 cut(s) 38, 48, 60, 69, 94, 150, 275, 297
GsuI CTGGAG 1 cut(s) 414
HapII CCGG 1 cut(s) 408
HincII GTYRAC 2 cut(s) 12, 469
HindII GTYRAC 2 cut(s) 12, 469
HindIII AAGCTT 1 cut(s) 286
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 16, 274
Hpy166II GTNNAC 4 cut(s) 12, 138, 193, 469
Hpy188I TCNGA 2 cut(s) 354, 387
Hpy188III TCNNGA 1 cut(s) 492
Hpy8I GTNNAC 4 cut(s) 12, 138, 193, 469
Hpy99I CGWCG 4 cut(s) 248, 251, 467, 470
HpyAV CCTTC 3 cut(s) 118, 319, 491
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 56, 65, 68, 302, 404
HpyF3I CTNAG 2 cut(s) 112, 132
HpySE526I ACGT 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 75, 84, 382, 387
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 3 cut(s) 327, 378, 421
Lsp1109I GCAGC 4 cut(s) 24, 59, 161, 261
MaeI CTAG 3 cut(s) 90, 203, 302
MaeII ACGT 1 cut(s) 281
MalI GATC 4 cut(s) 77, 86, 384, 389
MboI GATC 4 cut(s) 75, 84, 382, 387
MboII GAAGA 1 cut(s) 206
MluCI AATT 2 cut(s) 239, 402
MnlI CCTC 2 cut(s) 20, 437
MseI TTAA 2 cut(s) 156, 401
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 6 cut(s) 37, 56, 65, 68, 302, 404
NdeII GATC 4 cut(s) 75, 84, 382, 387
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 465
PkrI GCNGC 8 cut(s) 39, 49, 61, 70, 95, 151, 276, 298
RsaI GTAC 2 cut(s) 137, 435
RsaNI GTAC 2 cut(s) 136, 434
RseI CAYNNNNRTG 1 cut(s) 143
SalI GTCGAC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 156, 401
SatI GCNGC 8 cut(s) 38, 48, 60, 69, 94, 150, 275, 297
Sau3AI GATC 4 cut(s) 75, 84, 382, 387
SetI ASST 7 cut(s) 106, 133, 200, 284, 290, 346, 400
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 239, 402
SsiI CCGC 6 cut(s) 59, 69, 94, 296, 305, 360
SspMI CTAG 3 cut(s) 90, 203, 302
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 468
TasI AATT 2 cut(s) 239, 402
TatI WGTACW 2 cut(s) 135, 433
TauI GCSGC 4 cut(s) 62, 71, 96, 299
Tru1I TTAA 2 cut(s) 156, 401
Tru9I TTAA 2 cut(s) 156, 401
TscAI CASTG 1 cut(s) 397
TseI GCWGC 4 cut(s) 37, 47, 149, 274
TspRI CASTG 1 cut(s) 397
XapI RAATTY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 3 cut(s) 90, 203, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.