Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Forward (+)

2231213 .. 2232450

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G046800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACTAAGATTAGGAAGATCTTCACCTTTCTGCTAAGGCTGCTAGCTTTGGCTGCAACTCTGTCTGCCACCATAGTTATGGTCACAAGCCATGACTCTACCAATGTCTTGAACTTAACATTCAAGGCCAAATACAGCAATTCGCCTGCTTTCATGTACTTTGTGATTGTGGAAGCAATTGTAAGTGGATACAACCTTATGATTCTGTTTCTTGCTTTGAAGGGTTCGCTTTGGCGCATGGTCATCATTCTAGATGTGGTTGTGGCTTTGTTACTTACTTCAAGCATGTCAGCAGCCTTGGCAATAGCTCAAGTGGGCAAGAAAGGGAACACTCATGCTGGCTGGCTGCCCATCTGTGGACAAGTCCACAAGTTCTGCAATCATGTAACAGGAGCTCTTGTTGCTGGCATCATTGCAGCAGCATTATATTTTCTGCTAATTCTCTACACTCTTTACACTGTTCTCAATCCTCTGTTTGTTGTAAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

164

Amino Acids

17.76

Weight (kDa)

9.85

Isoelectric Point (pI)

17.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	112, 124, 220, 282
AluBI	AGCT	3 cut(s)	47, 308, 395
AluI	AGCT	3 cut(s)	47, 308, 395
Alw21I	GWGCWC	1 cut(s)	397
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	6 cut(s)	40, 53, 293, 346, 416, 419
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	6 cut(s)	27, 40, 305, 333, 428, 431
BccI	CCATC	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	44, 251
BfuI	GTATCC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	6 cut(s)	41, 54, 294, 347, 417, 420
BlsI	GCNGC	6 cut(s)	42, 55, 295, 348, 418, 421
BmsI	GCATC	1 cut(s)	417
BmtI	GCTAGC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	27, 40, 305, 333, 428, 431
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	356
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	128
BspOI	GCTAGC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	460
BstC8I	GCNNGC	5 cut(s)	45, 147, 340, 344, 406
BstDEI	CTNAG	2 cut(s)	6, 35
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
BstNSI	RCATGY	1 cut(s)	289
BstV1I	GCAGC	6 cut(s)	27, 40, 305, 333, 428, 431
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	5 cut(s)	45, 147, 340, 344, 406
CfoI	GCGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	6 cut(s)	92, 154, 238, 286, 335, 383
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	6, 35
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	6 cut(s)	95, 157, 241, 289, 338, 386
FatI	CATG	6 cut(s)	91, 153, 237, 285, 334, 382
Fnu4HI	GCNGC	6 cut(s)	41, 54, 294, 347, 417, 420
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	6 cut(s)	41, 54, 294, 347, 417, 420
FspBI	CTAG	2 cut(s)	44, 251
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	41, 54, 294, 347, 417, 420
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	6 cut(s)	95, 157, 241, 289, 338, 386
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	95, 202
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	359, 367
Hpy188III	TCNNGA	2 cut(s)	109, 251
Hpy8I	GTNNAC	2 cut(s)	359, 367
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	3 cut(s)	56, 378, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
HpyF3I	CTNAG	2 cut(s)	6, 35
Hsp92II	CATG	6 cut(s)	95, 157, 241, 289, 338, 386
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	5 cut(s)	159, 324, 328, 375, 390
Lsp1109I	GCAGC	6 cut(s)	27, 40, 305, 333, 428, 431
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	2 cut(s)	44, 251
MaeIII	GTNAC	3 cut(s)	82, 270, 385
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	13, 28
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	139, 177, 438
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	116, 490
MslI	CAYNNNNRTG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
NdeII	GATC	1 cut(s)	18
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	6 cut(s)	95, 157, 241, 289, 338, 386
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	42, 55, 295, 348, 418, 421
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	116, 490
SatI	GCNGC	6 cut(s)	41, 54, 294, 347, 417, 420
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	29, 49, 198, 310, 397, 490
SfaNI	GCATC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	139, 177, 438
SspMI	CTAG	2 cut(s)	44, 251
SstI	GAGCTC	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	460
TasI	AATT	3 cut(s)	139, 177, 438
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	116, 490
Tru9I	TTAA	2 cut(s)	116, 490
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	6 cut(s)	40, 53, 293, 346, 416, 419
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	463
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	44, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.