Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Reverse (-)

16804812 .. 16805750

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCACCCAAACTCCAGTGCAGAATCCATGGCCAAGATCACTAAGAGACTCTGCACCCTAGTACTACGGCTGATGGCCGTCGCCGCTACCCTTGTGGCTGCAATTGTCATGGTTACAAGCCATCAGAGAACCAGCAACTTTGGAATATCTTTTGAAGTCAAGTATAACCACACACCAGCCTTCCTGTACTTTGCGATCGCAAATGCGATTGCAACCGTATACGGGTTTTTGGTTCTTTTCCTTCCTTCTGAGAGTCAGCTATGGAGATTAGTCGTGGCTTTGGATGTGGTAATCACTGTATTACTGAGCTCAAGCTTTTCAGCAGCTTTGGCTATTGGTGATGTGGGGAAGCATGGAAATTCATATGCAGGTTGGCTACCCATATGCGGGCAAGTCCCCAAATACTGTGACCATGTAAAGGCAGCCCTAATCTCAAGCTTTGTTGGCCTCATAATATATTTGCTGCTGCTTCTGTATGCCATCCACACTGTCCTGGATCCTCTCCTCTTGAAAAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

174

Amino Acids

18.8

Weight (kDa)

9.22

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	2 cut(s)	84, 387
AclWI	GGATC	2 cut(s)	491, 504
AcoI	YGGCCR	2 cut(s)	30, 75
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	63, 188
AfiI	CCNNNNNNNGG	4 cut(s)	222, 386, 387, 418
AgsI	TTSAA	2 cut(s)	155, 511
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	5 cut(s)	259, 309, 315, 326, 438
AluI	AGCT	5 cut(s)	259, 309, 315, 326, 438
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	491, 504
AoxI	GGCC	3 cut(s)	30, 75, 445
ApeKI	GCWGC	5 cut(s)	98, 323, 422, 463, 466
ApoI	RAATTY	1 cut(s)	358
AsiSI	GCGATCGC	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	5 cut(s)	85, 335, 434, 450, 453
BccI	CCATC	3 cut(s)	67, 129, 488
BceAI	ACGGC	2 cut(s)	62, 83
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	6 cut(s)	84, 99, 324, 423, 464, 467
BlsI	GCNGC	6 cut(s)	85, 100, 325, 424, 465, 468
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	295, 418
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 386, 387, 418
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	289, 480
BseLI	CCNNNNNNNGG	4 cut(s)	222, 386, 387, 418
BseMII	CTCAG	2 cut(s)	240, 296
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	5 cut(s)	85, 335, 434, 450, 453
BsgI	GTGCAG	2 cut(s)	37, 39
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	32, 77, 447
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	4 cut(s)	222, 386, 387, 418
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	32, 77, 447
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	36, 195, 496
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	2 cut(s)	84, 387
BspANI	GGCC	3 cut(s)	32, 77, 447
BspCNI	CTCAG	2 cut(s)	241, 297
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	491, 504
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	36, 195, 496
BssNAI	GTATAC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	4 cut(s)	217, 298, 407, 490
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	42, 249, 305
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	289, 480
BstKTI	GATC	3 cut(s)	39, 198, 499
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	36, 195, 496
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 329, 444
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstV1I	GCAGC	5 cut(s)	85, 335, 434, 450, 453
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BstZ17I	GTATAC	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	32, 77, 447
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	289, 480
BtsIMutI	CAGTG	3 cut(s)	22, 294, 486
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	62, 187
CviAII	CATG	4 cut(s)	28, 109, 353, 413
CviQI	GTAC	2 cut(s)	62, 187
DdeI	CTNAG	3 cut(s)	42, 249, 305
DpnI	GATC	3 cut(s)	38, 197, 498
DpnII	GATC	3 cut(s)	36, 195, 496
EaeI	YGGCCR	2 cut(s)	30, 75
Ecl136II	GAGCTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	31, 112, 356, 416
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	4 cut(s)	27, 108, 352, 412
FauI	CCCGC	1 cut(s)	380
FauNDI	CATATG	2 cut(s)	364, 383
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	84, 99, 324, 423, 464, 467
FokI	GGATG	2 cut(s)	296, 467
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	84, 99, 324, 423, 464, 467
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	6 cut(s)	84, 99, 324, 423, 464, 467
HaeIII	GGCC	3 cut(s)	32, 77, 447
Hin1II	CATG	4 cut(s)	31, 112, 356, 416
HindIII	AAGCTT	2 cut(s)	313, 436
HinfI	GANTC	3 cut(s)	23, 48, 253
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	126, 250
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	190, 251, 255
HpyCH4III	ACNGT	4 cut(s)	217, 298, 407, 490
HpyCH4V	TGCA	6 cut(s)	4, 20, 54, 101, 212, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 329, 444
HpyF3I	CTNAG	3 cut(s)	42, 249, 305
Hsp92II	CATG	4 cut(s)	31, 112, 356, 416
Kzo9I	GATC	3 cut(s)	36, 195, 496
LpnPI	CCDG	7 cut(s)	28, 145, 189, 197, 354, 479, 506
Lsp1109I	GCAGC	5 cut(s)	85, 335, 434, 450, 453
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	112, 407
MalI	GATC	3 cut(s)	38, 197, 498
MboI	GATC	3 cut(s)	36, 195, 496
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	102, 358
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	42, 262
MnlI	CCTC	3 cut(s)	458, 510, 515
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	520
Msp20I	TGGCCA	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	83, 329, 444
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	2 cut(s)	364, 383
NdeII	GATC	3 cut(s)	36, 195, 496
NlaIII	CATG	4 cut(s)	31, 112, 356, 416
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	6 cut(s)	85, 100, 325, 424, 465, 468
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	2 cut(s)	42, 261
PpsI	GAGTC	2 cut(s)	42, 261
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	198
RgaI	GCGATCGC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	63, 188
RsaNI	GTAC	2 cut(s)	62, 187
SacI	GAGCTC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	6 cut(s)	84, 99, 324, 423, 464, 467
Sau3AI	GATC	3 cut(s)	36, 195, 496
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	2 cut(s)	42, 262
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	6 cut(s)	261, 311, 317, 328, 373, 440
SfaAI	GCGATCGC	1 cut(s)	198
SgfI	GCGATCGC	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	310, 433
SmoI	CTYRAG	2 cut(s)	310, 433
Sse9I	AATT	2 cut(s)	102, 358
SsiI	CCGC	2 cut(s)	84, 387
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	4 cut(s)	217, 298, 407, 490
TasI	AATT	2 cut(s)	102, 358
TatI	WGTACW	2 cut(s)	61, 186
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	3 cut(s)	22, 301, 493
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	5 cut(s)	98, 323, 422, 463, 466
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	22, 301, 493
XapI	RAATTY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.