Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Forward (+)

59281332 .. 59283884

Gene Structure 2553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0435000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCTTTCGGTTTAGTCTCAGCATGGAACAAGCGCAGAAGGTCCAAATCCTATGACCACACAGACCCTTGGACTTATAAGCCAGTGGAGTTCTGGCAACTCAATGATCAAACACCTCAACAAACGAAAAGGCACCATCATGGCTCTTCAGTGTTTACACTCAAAGAAATGGAAGAGGCAACATTTTCATTCAGTGACAAGAACTTTCTTGGGAAAGGAGGATTTGGCCGCGTATATAGAGGAACTTTGCGCTCAGGAGAGGTTGTAGCAATTAAAAAGATGGAGCTGCCTCCCTTTAAAGCAGCTGACGGAGAACGAGAATTTCGGGTAGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATTTGGTTTCTTTGATAGGCTATTGTGCTGATGGCAAGCACCGGTTTTTGGTATATGAATACCTGCAGAAAGGGAACCTGCAAGATCACTTAAATGGAATTAATGAGAAACACAAAATGGGTTGGCCTCAAAGGCTCAGAGTGGCACTTGGAGCAGCAAGGGGCTTAGCATATCTACATTCGAGTTCAACTCCTATTGTTCACAGAGATTTCAAATCCACCAACATTCTTTTAGATGCCAACTTTGAAGCAAAAATATCCGATTTTGGGCTTGCCAAGTTGATGCCAGAGGGAAAGGAAATGTATGTGACTGCTAGAGTACTTGGCACATTCGGCTATTTTGATCCGGAGTATACATCGACAGGAAAACTCACTTTACAGAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACCGGACGTCAAGCCCTGGACCTAAACCAAGGACCAAATGATCAAAATCTTGTACTACAGGTAAAGCACATATTAAATGATCGGAAGAAGCTGCGTAAGGTCATTGATCCTGAGCTGGGTCGAAGTTCATACACCATGGAATCTATAGTTATGTTTGCAAACCTGGCATCACGATGTGTGCGTCCTGACAGCAGTGAAAGACCCTCCATGGCTGAATGTGTAAAAGAACTGCAGTTGATTATCATTACAAATGCAAAAGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

350

Amino Acids

39.74

Weight (kDa)

9.21

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 337	1.5e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 339	4.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AatII	GACGTC	1 cut(s)	796
Acc36I	ACCTGC	2 cut(s)	435, 450
AccB1I	GGYRCC	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	336, 716
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	709
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	2 cut(s)	701, 887
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	320, 364
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	793
AdeI	CACNNNGTG	1 cut(s)	962
AfaI	GTAC	2 cut(s)	684, 840
AfiI	CCNNNNNNNGG	4 cut(s)	367, 412, 630, 902
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	552, 577, 611, 779
AhdI	GACNNNNNGTC	1 cut(s)	792
AjnI	CCWGG	2 cut(s)	801, 948
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	4 cut(s)	286, 305, 877, 901
AluI	AGCT	4 cut(s)	286, 305, 877, 901
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	701, 887
Aor13HI	TCCGGA	1 cut(s)	709
AoxI	GGCC	2 cut(s)	226, 488
ApeKI	GCWGC	4 cut(s)	286, 302, 518, 877
ApoI	RAATTY	2 cut(s)	320, 364
AseI	ATTAAT	1 cut(s)	465
AsiGI	ACCGGT	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	36, 252
AspS9I	GGNCC	3 cut(s)	42, 805, 818
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	42, 805, 818
BanI	GGYRCC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	273, 314, 530, 864
BccI	CCATC	3 cut(s)	144, 274, 389
BciT130I	CCWGG	2 cut(s)	803, 950
BclI	TGATCA	3 cut(s)	106, 355, 826
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	4 cut(s)	428, 842, 930, 1016
BfuAI	ACCTGC	2 cut(s)	435, 450
BglI	GCCNNNNNGGC	1 cut(s)	496
BisI	GCNGC	5 cut(s)	229, 287, 303, 519, 878
BlpI	GCTNAGC	1 cut(s)	529
BlsI	GCNGC	5 cut(s)	230, 288, 304, 520, 879
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	2 cut(s)	803, 950
Bme18I	GGWCC	3 cut(s)	42, 805, 818
BmeRI	GACNNNNNGTC	1 cut(s)	792
BmgT120I	GGNCC	3 cut(s)	42, 805, 818
BmiI	GGNNCC	2 cut(s)	134, 440
BmrFI	CCNGG	2 cut(s)	803, 950
BmsI	GCATC	3 cut(s)	589, 636, 962
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
Bpu10I	CCTNAGC	2 cut(s)	253, 897
Bpu1102I	GCTNAGC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	793
BsaJI	CCNNGG	5 cut(s)	68, 801, 814, 921, 993
BsaWI	WCCGGW	3 cut(s)	405, 709, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 412, 630, 902
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	831
BseAI	TCCGGA	1 cut(s)	709
BseBI	CCWGG	2 cut(s)	803, 950
BseDI	CCNNGG	5 cut(s)	68, 801, 814, 921, 993
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	4 cut(s)	367, 412, 630, 902
BseMII	CTCAG	4 cut(s)	33, 267, 514, 888
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	273, 314, 530, 864
BseYI	CCCAGC	1 cut(s)	901
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	228, 490
BshNI	GGYRCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	406, 710, 789
BslI	CCNNNNNNNGG	4 cut(s)	367, 412, 630, 902
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	228, 490
Bsp13I	TCCGGA	1 cut(s)	709
Bsp143I	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
Bsp1720I	GCTNAGC	1 cut(s)	529
Bsp19I	CCATGG	2 cut(s)	921, 993
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	228, 490
BspCNI	CTCAG	4 cut(s)	32, 266, 513, 889
BspEI	TCCGGA	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	134, 440
BspMAI	CTGCAG	2 cut(s)	432, 1020
BspMI	ACCTGC	2 cut(s)	435, 450
BspPI	GGATC	2 cut(s)	701, 887
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	5 cut(s)	68, 801, 814, 921, 993
BssMI	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
BssNAI	GTATAC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	793
BssT1I	CCWWGG	4 cut(s)	68, 814, 921, 993
Bst1107I	GTATAC	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	803, 950
Bst6I	CTCTTC	2 cut(s)	151, 168
BstACI	GRCGYC	1 cut(s)	793
BstC8I	GCNNGC	2 cut(s)	401, 636
BstDEI	CTNAG	5 cut(s)	19, 253, 500, 529, 897
BstDSI	CCRYGG	2 cut(s)	921, 993
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	36, 252
BstKTI	GATC	7 cut(s)	109, 358, 451, 709, 829, 868, 895
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	496, 515, 696, 950
BstNI	CCWGG	2 cut(s)	803, 950
BstSCI	CCNGG	2 cut(s)	801, 948
BstSFI	CTRYAG	4 cut(s)	428, 842, 930, 1016
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	273, 314, 530, 864
BstZ17I	GTATAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	228, 490
BtgI	CCRYGG	2 cut(s)	921, 993
BtsI	GCAGTG	1 cut(s)	985
BtsIMutI	CAGTG	4 cut(s)	90, 156, 199, 985
BveI	ACCTGC	2 cut(s)	435, 450
Cac8I	GCNNGC	2 cut(s)	401, 636
CfoI	GCGC	2 cut(s)	36, 252
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	42, 805, 818
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	2 cut(s)	683, 839
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	4 cut(s)	24, 140, 922, 994
CviQI	GTAC	2 cut(s)	683, 839
DdeI	CTNAG	5 cut(s)	19, 253, 500, 529, 897
DpnI	GATC	7 cut(s)	108, 357, 450, 708, 828, 867, 894
DpnII	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
DraI	TTTAAA	1 cut(s)	298
DraIII	CACNNNGTG	1 cut(s)	962
DriI	GACNNNNNGTC	1 cut(s)	792
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	151, 168
Eam1105I	GACNNNNNGTC	1 cut(s)	792
EarI	CTCTTC	2 cut(s)	151, 168
Eco130I	CCWWGG	4 cut(s)	68, 814, 921, 993
Eco47I	GGWCC	3 cut(s)	42, 805, 818
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	801, 948
EcoT14I	CCWWGG	4 cut(s)	68, 814, 921, 993
EcoT22I	ATGCAT	1 cut(s)	760
ErhI	CCWWGG	4 cut(s)	68, 814, 921, 993
FaeI	CATG	4 cut(s)	27, 143, 925, 997
FatI	CATG	4 cut(s)	23, 139, 921, 993
FbaI	TGATCA	3 cut(s)	106, 355, 826
FblI	GTMKAC	2 cut(s)	336, 716
Fnu4HI	GCNGC	5 cut(s)	229, 287, 303, 519, 878
Fsp4HI	GCNGC	5 cut(s)	229, 287, 303, 519, 878
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	2 cut(s)	35, 251
GluI	GCNGC	5 cut(s)	229, 287, 303, 519, 878
GsaI	CCCAGC	1 cut(s)	905
HaeIII	GGCC	2 cut(s)	228, 490
HapII	CCGG	3 cut(s)	406, 710, 789
HgaI	GACGC	1 cut(s)	956
HhaI	GCGC	2 cut(s)	36, 252
Hin1I	GRCGYC	1 cut(s)	793
Hin1II	CATG	4 cut(s)	27, 143, 925, 997
Hin6I	GCGC	2 cut(s)	34, 250
HinP1I	GCGC	2 cut(s)	34, 250
HinfI	GANTC	1 cut(s)	926
HpaII	CCGG	3 cut(s)	406, 710, 789
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	4 cut(s)	156, 337, 565, 717
Hpy188I	TCNGA	4 cut(s)	503, 625, 786, 870
Hpy188III	TCNNGA	7 cut(s)	255, 343, 710, 776, 896, 957, 971
Hpy8I	GTNNAC	4 cut(s)	156, 337, 565, 717
HpyAV	CCTTC	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	6 cut(s)	430, 445, 758, 944, 1018, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	496, 515, 696, 950
HpyF3I	CTNAG	5 cut(s)	19, 253, 500, 529, 897
HpySE526I	ACGT	1 cut(s)	793
Hsp92I	GRCGYC	1 cut(s)	793
Hsp92II	CATG	4 cut(s)	27, 143, 925, 997
HspAI	GCGC	2 cut(s)	34, 250
Kpn2I	TCCGGA	1 cut(s)	709
Ksp22I	TGATCA	3 cut(s)	106, 355, 826
Kzo9I	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	283, 515
Lsp1109I	GCAGC	4 cut(s)	273, 314, 530, 864
LweI	GCATC	3 cut(s)	589, 636, 962
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	2 cut(s)	194, 670
MalI	GATC	7 cut(s)	108, 357, 450, 708, 828, 867, 894
MboI	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
MboII	GAAGA	4 cut(s)	138, 185, 764, 883
MluCI	AATT	4 cut(s)	270, 320, 364, 462
MnlI	CCTC	9 cut(s)	126, 169, 212, 233, 253, 300, 501, 646, 1000
Mph1103I	ATGCAT	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	709
MseI	TTAA	5 cut(s)	273, 297, 455, 465, 860
MslI	CAYNNNNRTG	3 cut(s)	138, 456, 958
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	3 cut(s)	406, 710, 789
MspR9I	CCNGG	2 cut(s)	803, 950
MvaI	CCWGG	2 cut(s)	803, 950
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	496, 515, 696, 950
NcoI	CCATGG	2 cut(s)	921, 993
NdeII	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
NlaIII	CATG	4 cut(s)	27, 143, 925, 997
NlaIV	GGNNCC	2 cut(s)	134, 440
NmuCI	GTSAC	2 cut(s)	194, 670
NsiI	ATGCAT	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PfeI	GAWTC	1 cut(s)	926
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	5 cut(s)	230, 288, 304, 520, 879
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	801, 948
PspFI	CCCAGC	1 cut(s)	901
PspGI	CCWGG	2 cut(s)	801, 948
PspN4I	GGNNCC	2 cut(s)	134, 440
PspPI	GGNCC	3 cut(s)	42, 805, 818
PstI	CTGCAG	2 cut(s)	432, 1020
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	684, 840
RsaNI	GTAC	2 cut(s)	683, 839
RseI	CAYNNNNRTG	3 cut(s)	138, 456, 958
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	5 cut(s)	273, 297, 455, 465, 860
SatI	GCNGC	5 cut(s)	229, 287, 303, 519, 878
Sau3AI	GATC	7 cut(s)	106, 355, 448, 706, 826, 865, 892
Sau96I	GGNCC	3 cut(s)	42, 805, 818
ScaI	AGTACT	1 cut(s)	684
ScrFI	CCNGG	2 cut(s)	803, 950
SfaNI	GCATC	3 cut(s)	589, 636, 962
SfcI	CTRYAG	4 cut(s)	428, 842, 930, 1016
SinI	GGWCC	3 cut(s)	42, 805, 818
SmiMI	CAYNNNNRTG	3 cut(s)	138, 456, 958
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	270, 320, 364, 462
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	801, 948
StyI	CCWWGG	4 cut(s)	68, 814, 921, 993
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	3 cut(s)	545, 722, 907
TasI	AATT	4 cut(s)	270, 320, 364, 462
TatI	WGTACW	2 cut(s)	682, 838
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	926
Tru1I	TTAA	5 cut(s)	273, 297, 455, 465, 860
Tru9I	TTAA	5 cut(s)	273, 297, 455, 465, 860
TscAI	CASTG	4 cut(s)	90, 156, 199, 985
TseFI	GTSAC	2 cut(s)	194, 670
TseI	GCWGC	4 cut(s)	286, 302, 518, 877
Tsp45I	GTSAC	2 cut(s)	194, 670
TspDTI	ATGAA	3 cut(s)	177, 435, 903
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	4 cut(s)	90, 156, 199, 985
VpaK11BI	GGWCC	3 cut(s)	42, 805, 818
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	320, 364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	336, 716
XspI	CTAG	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	794
ZrmI	AGTACT	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.