Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Reverse (-)

89434599 .. 89435828

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATCATCAGCAGGAGGATCTTCATCTCTCTGCTCAGGCTACTAGCCTTGGCTGCAACTCTGGTTGCCACCATTGTAATGGTTACGAGCCATGACTCTACGAATGTCTTGAACTTAACGTTCAAGGCCAAATTCAGCAACTCACCAGCTTTCAAGTATTTTGTGGTTGTGGAAGCAATTGCCTGCGCGTACAACCTTGTCATTATGTTTCTTGCTTCCAAGGGCTCGCTTTGGCGCTTGGTTATCATCCTCGACGTGGTTGTAGCGGTGTTACTTGCTTCAAGTGTGTCATCGGCCTTGGCAATAGCGTATGTGGGGAAGAAAGGAAACACGCACGCTGGTTGGCTTCCGATTTGTGGACAAGTCCCAAAGTTCTGCAAGCATGTCACTGCTGCTCTTGTTGCTGCCTTCATTGCAGCAATCCTGTATTTTTTTCTTGTTATCTATACCCTCTACACTGTTCTCCATCCTCTATTTGTTGTAAAAATGATGCTCAGTCATCCAGTTTATGCAGACATTGCTGTTGTCAAGGATACAATGAAAAGAAAACAATGTAATGTTACAATCCTCGGGATTCTAGACCTCAAGAAATGGCATATCCCAGTGGTGGTGAAAATTGTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

208

Amino Acids

22.86

Weight (kDa)

9.88

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 142	1.4e-39	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	266
AclI	AACGTT	1 cut(s)	119
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	256, 356, 607
AgsI	TTSAA	4 cut(s)	112, 124, 154, 282
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	126, 294
ApeKI	GCWGC	4 cut(s)	53, 392, 404, 416
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	188, 237
AsuHPI	GGTGA	2 cut(s)	135, 622
AvaI	CYCGRG	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	4 cut(s)	40, 379, 391, 428
BccI	CCATC	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	44, 578, 625
BfoI	RGCGCY	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	526
BisI	GCNGC	4 cut(s)	54, 393, 405, 417
BlsI	GCNGC	4 cut(s)	55, 394, 406, 418
BmeT110I	CYCGRG	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	256
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	48, 219, 297, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 356, 607
Bse1I	ACTGG	2 cut(s)	503, 602
Bse3DI	GCAATG	2 cut(s)	411, 516
Bse8I	GATNNNNATC	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	48, 219, 297, 568
BseGI	GGATG	3 cut(s)	246, 466, 499
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	256, 356, 607
BseMI	GCAATG	2 cut(s)	411, 516
BseMII	CTCAG	2 cut(s)	49, 508
BseNI	ACTGG	2 cut(s)	503, 602
BseXI	GCAGC	4 cut(s)	40, 379, 391, 428
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	128, 296
BsiHKCI	CYCGRG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	256, 356, 607
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	128, 296
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	3, 18
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	2 cut(s)	128, 296
BspCNI	CTCAG	2 cut(s)	48, 507
BspFNI	CGCG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	411, 516
BsrI	ACTGG	2 cut(s)	503, 602
BssECI	CCNNGG	4 cut(s)	48, 219, 297, 568
BssMI	GATC	2 cut(s)	3, 18
BssT1I	CCWWGG	3 cut(s)	48, 219, 297
Bst4CI	ACNGT	1 cut(s)	460
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	184, 227, 336, 380
BstDEI	CTNAG	2 cut(s)	35, 494
BstF5I	GGATG	3 cut(s)	246, 466, 499
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	188, 237
BstKTI	GATC	2 cut(s)	6, 21
BstMBI	GATC	2 cut(s)	3, 18
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 401, 413, 518
BstNSI	RCATGY	1 cut(s)	386
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	40, 379, 391, 428
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	128, 296
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	246, 466, 499
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	387, 456, 609
Cac8I	GCNNGC	4 cut(s)	184, 227, 336, 380
CfoI	GCGC	2 cut(s)	188, 237
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	92, 383
CviJI	RGCY	9 cut(s)	40, 47, 53, 90, 128, 149, 225, 296, 346
CviKI_1	RGCY	9 cut(s)	40, 47, 53, 90, 128, 149, 225, 296, 346
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	35, 494
DpnI	GATC	2 cut(s)	5, 20
DpnII	GATC	2 cut(s)	3, 18
Eco130I	CCWWGG	3 cut(s)	48, 219, 297
Eco24I	GRGCYC	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	569
EcoT14I	CCWWGG	3 cut(s)	48, 219, 297
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	3 cut(s)	48, 219, 297
FaeI	CATG	2 cut(s)	95, 386
FaiI	YATR	7 cut(s)	93, 206, 312, 384, 447, 510, 597
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	91, 382
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	54, 393, 405, 417
FokI	GGATG	3 cut(s)	233, 453, 486
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	54, 393, 405, 417
FspBI	CTAG	3 cut(s)	44, 578, 625
GlaI	GCGC	2 cut(s)	187, 236
GluI	GCNGC	4 cut(s)	54, 393, 405, 417
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	128, 296
HhaI	GCGC	2 cut(s)	188, 237
Hin1II	CATG	2 cut(s)	95, 386
Hin6I	GCGC	2 cut(s)	186, 235
HinP1I	GCGC	2 cut(s)	186, 235
HinfI	GANTC	2 cut(s)	95, 574
HphI	GGTGA	2 cut(s)	135, 622
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	4 cut(s)	109, 571, 578, 586
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	119, 255
HpyCH4V	TGCA	4 cut(s)	56, 378, 416, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 401, 413, 518
HpyF3I	CTNAG	2 cut(s)	35, 494
HpySE526I	ACGT	2 cut(s)	119, 255
Hsp92II	CATG	2 cut(s)	95, 386
HspAI	GCGC	2 cut(s)	186, 235
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 18
LpnPI	CCDG	8 cut(s)	22, 47, 159, 196, 324, 437, 516, 615
Lsp1109I	GCAGC	4 cut(s)	40, 379, 391, 428
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	3 cut(s)	44, 578, 625
MaeII	ACGT	2 cut(s)	119, 255
MaeIII	GTNAC	4 cut(s)	82, 270, 385, 559
MalI	GATC	2 cut(s)	5, 20
MboI	GATC	2 cut(s)	3, 18
MboII	GAAGA	2 cut(s)	13, 331
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	131, 177, 615
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	6 cut(s)	9, 260, 461, 480, 578, 593
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	53, 401, 413, 518
NdeII	GATC	2 cut(s)	3, 18
NlaIII	CATG	2 cut(s)	95, 386
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	55, 394, 406, 418
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	54, 393, 405, 417
Sau3AI	GATC	2 cut(s)	3, 18
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	5 cut(s)	122, 151, 198, 258, 585
SfaNI	GCATC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	131, 177, 615
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	3 cut(s)	44, 578, 625
StyI	CCWWGG	3 cut(s)	48, 219, 297
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	2 cut(s)	122, 258
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	131, 177, 615
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	3 cut(s)	394, 463, 609
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	4 cut(s)	53, 392, 404, 416
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	13, 400, 554
TspRI	CASTG	3 cut(s)	394, 463, 609
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	44, 578, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.