Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Forward (+)

14537548 .. 14538667

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G137700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCAATACAAAGAGACTCTGCACCCTTGTGTTAAGGCTCATGGCTGTGGCTGCTACCCTTTCGGCCGCCGTTGTCATGGCTACAAGCCATGAGAGATCCAACGTCCTTGGATTATCTTTTGAAGCCAAGTATAACCATACACCAGCCTTCAGGTACTTTGTAATTGCAAATGCTATCGTAACCGTATACGGGTTTCTGGTTCTTTTTCTTCCTTCTAAGAGTCAGCTATGGAGACTAGTCGTGGCCTTGGATATGGTGCTCACCATTTTACTCACCTCAGGCATTTCAGCAGCTTTGGCTATTGGCAGTGTGGGCAGGCATGGAAATTCATATGCAGGCTGGCTGCCCATTTGTGGCCAAGTCCCCAAATACTGTGACCAAGTGAAGGGAGCTCTGATTGCAAGCTTTGTTGGCCTCCTAATATATGCTGTGCTGCTTCTTTATGCCATCCACAATGCCCTAGATCCTCTCTTCTTGCATAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

164

Amino Acids

17.64

Weight (kDa)

9.58

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	2 cut(s)	93, 461
AcoI	YGGCCR	3 cut(s)	3, 66, 358
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	192, 356, 388
AgsI	TTSAA	1 cut(s)	125
AhlI	ACTAGT	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	229, 296, 395, 408
AluI	AGCT	4 cut(s)	229, 296, 395, 408
Alw21I	GWGCWC	2 cut(s)	264, 397
Alw26I	GTCTC	2 cut(s)	10, 229
AlwI	GGATC	2 cut(s)	93, 461
AoxI	GGCC	5 cut(s)	3, 66, 246, 358, 415
ApeKI	GCWGC	4 cut(s)	53, 293, 346, 436
ApoI	RAATTY	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	256, 268
AxyI	CCTNAGG	1 cut(s)	280
BalI	TGGCCA	2 cut(s)	5, 360
BanII	GRGCYC	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	264, 397
BbvI	GCAGC	4 cut(s)	40, 305, 333, 423
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	10, 229
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	2 cut(s)	239, 464
BisI	GCNGC	5 cut(s)	54, 69, 294, 347, 437
BlsI	GCNGC	5 cut(s)	55, 70, 295, 348, 438
BsaJI	CCNNGG	2 cut(s)	109, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 356, 388
Bse21I	CCTNAGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	109, 249
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	192, 356, 388
BseMII	CTCAG	1 cut(s)	294
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	40, 305, 333, 423
BsgI	GTGCAG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	5 cut(s)	5, 68, 248, 360, 417
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	264, 397
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	192, 356, 388
BsmAI	GTCTC	2 cut(s)	10, 229
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	5 cut(s)	5, 68, 248, 360, 417
Bsp1286I	GDGCHC	2 cut(s)	264, 397
Bsp143I	GATC	2 cut(s)	98, 466
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	5 cut(s)	5, 68, 248, 360, 417
BspCNI	CTCAG	1 cut(s)	293
BspPI	GGATC	2 cut(s)	93, 461
BssECI	CCNNGG	2 cut(s)	109, 249
BssMI	GATC	2 cut(s)	98, 466
BssNAI	GTATAC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	109, 249
Bst1107I	GTATAC	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	187, 377
Bst6I	CTCTTC	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	320, 340, 344, 406
BstDEI	CTNAG	3 cut(s)	219, 280, 489
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	2 cut(s)	101, 469
BstMAI	GTCTC	2 cut(s)	10, 229
BstMBI	GATC	2 cut(s)	98, 466
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 299, 315, 401, 414
BstV1I	GCAGC	4 cut(s)	40, 305, 333, 423
BstX2I	RGATCY	2 cut(s)	98, 466
BstYI	RGATCY	2 cut(s)	98, 466
BstZ17I	GTATAC	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	280
BsuRI	GGCC	5 cut(s)	5, 68, 248, 360, 417
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	320, 340, 344, 406
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	43, 79, 92, 323
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	219, 280, 489
DpnI	GATC	2 cut(s)	100, 468
DpnII	GATC	2 cut(s)	98, 466
EaeI	YGGCCR	3 cut(s)	3, 66, 358
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	395
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	109, 249
Eco24I	GRGCYC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	136
Eco81I	CCTNAGG	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	109, 249
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	2 cut(s)	109, 249
FaeI	CATG	4 cut(s)	46, 82, 95, 326
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	42, 78, 91, 322
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	54, 69, 294, 347, 437
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	54, 69, 294, 347, 437
FspBI	CTAG	2 cut(s)	239, 464
GluI	GCNGC	5 cut(s)	54, 69, 294, 347, 437
HaeIII	GGCC	5 cut(s)	5, 68, 248, 360, 417
Hin1II	CATG	4 cut(s)	46, 82, 95, 326
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	2 cut(s)	18, 223
HphI	GGTGA	2 cut(s)	256, 268
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	399
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	160, 225, 382
HpyCH4III	ACNGT	2 cut(s)	187, 377
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	24, 170, 338, 404, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 299, 315, 401, 414
HpyF3I	CTNAG	3 cut(s)	219, 280, 489
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	46, 82, 95, 326
Kzo9I	GATC	2 cut(s)	98, 466
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	139, 159, 185, 267, 304, 324, 328
Lsp1109I	GCAGC	4 cut(s)	40, 305, 333, 423
MaeI	CTAG	2 cut(s)	239, 464
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	181, 377
MalI	GATC	2 cut(s)	100, 468
MboI	GATC	2 cut(s)	98, 466
MboII	GAAGA	2 cut(s)	203, 466
MflI	RGATCY	2 cut(s)	98, 466
MhlI	GDGCHC	2 cut(s)	264, 397
MlsI	TGGCCA	2 cut(s)	5, 360
MluCI	AATT	2 cut(s)	165, 328
MluNI	TGGCCA	2 cut(s)	5, 360
MlyI	GAGTC	2 cut(s)	12, 232
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	289, 428, 480
Mox20I	TGGCCA	2 cut(s)	5, 360
MscI	TGGCCA	2 cut(s)	5, 360
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	29, 47
Msp20I	TGGCCA	2 cut(s)	5, 360
MwoI	GCNNNNNNNGC	5 cut(s)	53, 299, 315, 401, 414
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	2 cut(s)	98, 466
NlaIII	CATG	4 cut(s)	46, 82, 95, 326
NmuCI	GTSAC	1 cut(s)	377
OliI	CACNNNNGTG	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	55, 70, 295, 348, 438
PleI	GAGTC	2 cut(s)	12, 231
PpsI	GAGTC	2 cut(s)	12, 231
Psp124BI	GAGCTC	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	98, 466
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	2 cut(s)	29, 47
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	5 cut(s)	54, 69, 294, 347, 437
Sau3AI	GATC	2 cut(s)	98, 466
SchI	GAGTC	2 cut(s)	12, 232
SduI	GDGCHC	2 cut(s)	264, 397
SetI	ASST	7 cut(s)	108, 158, 231, 281, 298, 397, 410
SmiMI	CAYNNNNRTG	2 cut(s)	29, 47
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	2 cut(s)	165, 328
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	239, 464
SstI	GAGCTC	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	109, 249
TaaI	ACNGT	2 cut(s)	187, 377
TaiI	ACGT	1 cut(s)	108
TasI	AATT	2 cut(s)	165, 328
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	4 cut(s)	53, 293, 346, 436
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	2 cut(s)	239, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.