Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Reverse (-)

28977171 .. 28978071

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1240500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAAAGATCACTAAGAGACTCTGCACGCTAGTTCTACGGCTGATGGCCGTCGGTGCTACCCTTTTGGCTGCAATTGTCATGGTTACAAGCCATCAGAGAACCAGCATCTTTGGAATATCTTTTGAAGTCAAGTATAACCATACTCCAGCCTTCCAGTACTTTGTGATCGCAAATGCGATTGCAACCGTATACGGCTTTCTGGTTATTTTTCTTCCTTCTGAGAGTCAGCTATGGAGATTAGTCGTGGCTTTGGATGTGGTAATCACTGTACTACTGAGCACAAGCATTTCAGCAGCCTTGGCTATTGGTACTCTGGGGAAGAATGGAAATTCATATGCGGGTTGGCTACCCATATGTGGACAAGTCCCAAAATACTGTGACCAAGTAAAGGGAGCCCTAATCTCAAGCTTTGTTGGCCTCATCATATATGTCCTGCTGCTTCTGTATGCCATCCACACTGTCCTCGATCCTCTCCTCTTGCGAAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

165

Amino Acids

17.84

Weight (kDa)

9.55

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 142	9.2e-40	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	331
AfaI	GTAC	3 cut(s)	161, 273, 313
AfiI	CCNNNNNNNGG	2 cut(s)	359, 391
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	2 cut(s)	232, 411
AluI	AGCT	2 cut(s)	232, 411
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	2 cut(s)	48, 418
ApeKI	GCWGC	3 cut(s)	71, 296, 439
ApoI	RAATTY	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	58, 308, 426
BccI	CCATC	3 cut(s)	40, 102, 461
BceAI	ACGGC	3 cut(s)	35, 56, 211
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	3 cut(s)	72, 297, 440
BlsI	GCNGC	3 cut(s)	73, 298, 441
BmcAI	AGTACT	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 391
Bse1I	ACTGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	262, 453
BseLI	CCNNNNNNNGG	2 cut(s)	359, 391
BseMII	CTCAG	2 cut(s)	213, 269
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	58, 308, 426
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	50, 420
BsiHKAI	GWGCWC	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	359, 391
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	50, 420
Bsp1286I	GDGCHC	2 cut(s)	284, 400
Bsp143I	GATC	3 cut(s)	9, 168, 469
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	2 cut(s)	50, 420
BspCNI	CTCAG	2 cut(s)	214, 270
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	9, 168, 469
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	193
Bst4CI	ACNGT	4 cut(s)	190, 271, 380, 463
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	15, 222, 278, 492
BstF5I	GGATG	2 cut(s)	262, 453
BstKTI	GATC	3 cut(s)	12, 171, 472
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	9, 168, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 302, 417
BstV1I	GCAGC	3 cut(s)	58, 308, 426
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	50, 420
BtsCI	GGATG	2 cut(s)	262, 453
BtsIMutI	CAGTG	2 cut(s)	267, 459
Cac8I	GCNNGC	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	160, 272, 312
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	3 cut(s)	160, 272, 312
DdeI	CTNAG	4 cut(s)	15, 222, 278, 492
DpnI	GATC	3 cut(s)	11, 170, 471
DpnII	GATC	3 cut(s)	9, 168, 469
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	85
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	81
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	2 cut(s)	337, 356
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	72, 297, 440
FokI	GGATG	2 cut(s)	269, 440
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	72, 297, 440
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	3 cut(s)	72, 297, 440
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	50, 420
Hin1II	CATG	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	2 cut(s)	21, 226
Hpy166II	GTNNAC	2 cut(s)	193, 362
Hpy188I	TCNGA	2 cut(s)	99, 223
Hpy8I	GTNNAC	2 cut(s)	193, 362
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	163, 228
HpyCH4III	ACNGT	4 cut(s)	190, 271, 380, 463
HpyCH4V	TGCA	3 cut(s)	27, 74, 185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 302, 417
HpyF3I	CTNAG	4 cut(s)	15, 222, 278, 492
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	9, 168, 469
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	6 cut(s)	118, 162, 170, 188, 302, 449
Lsp1109I	GCAGC	3 cut(s)	58, 308, 426
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	85, 380
MalI	GATC	3 cut(s)	11, 170, 471
MboI	GATC	3 cut(s)	9, 168, 469
MboII	GAAGA	2 cut(s)	206, 334
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	284, 400
MluCI	AATT	2 cut(s)	75, 331
MlyI	GAGTC	2 cut(s)	15, 235
MnlI	CCTC	4 cut(s)	431, 476, 483, 488
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	56, 302, 417
NdeI	CATATG	2 cut(s)	337, 356
NdeII	GATC	3 cut(s)	9, 168, 469
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	73, 298, 441
PleI	GAGTC	2 cut(s)	15, 234
PpsI	GAGTC	2 cut(s)	15, 234
PspN4I	GGNNCC	1 cut(s)	397
RsaI	GTAC	3 cut(s)	161, 273, 313
RsaNI	GTAC	3 cut(s)	160, 272, 312
SatI	GCNGC	3 cut(s)	72, 297, 440
Sau3AI	GATC	3 cut(s)	9, 168, 469
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	15, 235
SduI	GDGCHC	2 cut(s)	284, 400
SetI	ASST	2 cut(s)	234, 413
SfaNI	GCATC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	2 cut(s)	75, 331
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	190, 271, 380, 463
TaqI	TCGA	1 cut(s)	468
TasI	AATT	2 cut(s)	75, 331
TatI	WGTACW	2 cut(s)	159, 271
TscAI	CASTG	2 cut(s)	274, 466
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	71, 296, 439
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	2 cut(s)	274, 466
XapI	RAATTY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.