Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Reverse (-)

26489584 .. 26490640

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACTCAGACCAGGAGGATCTTCACCTTTGTGCTGAGGCTGCTGGCCTTGGCTGCTACTGTTTCTGCCACCATAGTTATGGTCACCAGCCACGACTCTACCAGGGTCTTGAACTTGACCTTCAAGGCCAAATTCAGCGATTCCCCGACTTTCATGTACTTTGTGATTGTGGAGGCAATTGTAAGTGGATACAACCTTATAATCCTGCTTCTTTCTTCGAAGGGTTCACTGTGGCGCATTGTTATCATCCTAGATGTGGTTGCAGCTCTTCTTCTTACTTCAAGCATGTCAGCGGCCCTGGCGATAGGTCAAGTGGGGAAGAAAGGGAACACTCACGCTGGTTGGCTGCCAATTTGTGGACAAGTGTCCAAGTTTTGCAACCATGTCAATGGGGCTCTTGTTGCTGGCATCCTTGCAGCAATATTTTACTATGTGCTTAATCTATTTACTCTTTACAATGCTCTTAATCCTCTCTTCGTGGTAAAACCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

165

Amino Acids

17.78

Weight (kDa)

9.88

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	256, 356
AgsI	TTSAA	3 cut(s)	112, 124, 282
AjnI	CCWGG	3 cut(s)	11, 101, 297
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	3 cut(s)	45, 126, 294
ApeKI	GCWGC	5 cut(s)	40, 53, 263, 346, 416
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	16, 76
AsuII	TTCGAA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	397
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	27, 40, 275, 333, 428
BciT130I	CCWGG	3 cut(s)	13, 103, 299
BciVI	GTATCC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	251, 489
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
BlsI	GCNGC	6 cut(s)	42, 55, 265, 295, 348, 418
Bme1390I	CCNGG	3 cut(s)	13, 103, 299
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	3 cut(s)	13, 103, 299
BmsI	GCATC	1 cut(s)	417
BoxI	GACNNNNGTC	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	48, 102, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 356
BseBI	CCWGG	3 cut(s)	13, 103, 299
BseDI	CCNNGG	3 cut(s)	48, 102, 297
BseGI	GGATG	2 cut(s)	246, 408
BseLI	CCNNNNNNNGG	2 cut(s)	256, 356
BseMII	CTCAG	2 cut(s)	20, 26
BseXI	GCAGC	5 cut(s)	27, 40, 275, 333, 428
BshFI	GGCC	3 cut(s)	47, 128, 296
BslI	CCNNNNNNNGG	2 cut(s)	256, 356
BsnI	GGCC	3 cut(s)	47, 128, 296
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	3 cut(s)	47, 128, 296
BspCNI	CTCAG	2 cut(s)	19, 27
BspPI	GGATC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	48, 102, 297
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	13, 103, 299
Bst4CI	ACNGT	2 cut(s)	61, 231
Bst6I	CTCTTC	2 cut(s)	273, 479
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	45, 406
BstDEI	CTNAG	2 cut(s)	6, 35
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	246, 408
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
BstNI	CCWGG	3 cut(s)	13, 103, 299
BstNSI	RCATGY	1 cut(s)	289
BstPAI	GACNNNNGTC	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	3 cut(s)	11, 101, 297
BstV1I	GCAGC	5 cut(s)	27, 40, 275, 333, 428
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	2 cut(s)	79, 389
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	47, 128, 296
BtsCI	GGATG	2 cut(s)	246, 408
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	45, 406
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	154, 286, 383
CviJI	RGCY	9 cut(s)	40, 47, 53, 90, 128, 266, 296, 346, 395
CviKI_1	RGCY	9 cut(s)	40, 47, 53, 90, 128, 266, 296, 346, 395
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	6, 35
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	273, 479
EarI	CTCTTC	2 cut(s)	273, 479
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	11, 101, 297
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	157, 289, 386
FaiI	YATR	7 cut(s)	74, 80, 155, 200, 287, 384, 432
FatI	CATG	3 cut(s)	153, 285, 382
Fnu4HI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
FokI	GGATG	2 cut(s)	233, 395
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
FspBI	CTAG	2 cut(s)	251, 489
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
HaeIII	GGCC	3 cut(s)	47, 128, 296
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	157, 289, 386
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	4, 95, 140
HphI	GGTGA	2 cut(s)	16, 76
Hpy166II	GTNNAC	2 cut(s)	227, 359
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	227, 359
HpyAV	CCTTC	2 cut(s)	130, 214
HpyCH4III	ACNGT	2 cut(s)	61, 231
HpyCH4V	TGCA	3 cut(s)	263, 378, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
HpyF3I	CTNAG	2 cut(s)	6, 35
Hsp92II	CATG	3 cut(s)	157, 289, 386
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	273
Lsp1109I	GCAGC	5 cut(s)	27, 40, 275, 333, 428
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	2 cut(s)	251, 489
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	6 cut(s)	13, 207, 260, 263, 331, 466
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	131, 177, 351
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	9, 30, 166, 480
MseI	TTAA	3 cut(s)	438, 465, 493
MslI	CAYNNNNRTG	3 cut(s)	29, 77, 387
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	13, 103, 299
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	3 cut(s)	13, 103, 299
MwoI	GCNNNNNNNGC	4 cut(s)	40, 53, 299, 401
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	157, 289, 386
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	218
OliI	CACNNNNGTG	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	42, 55, 265, 295, 348, 418
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PshAI	GACNNNNGTC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	3 cut(s)	11, 101, 297
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	3 cut(s)	11, 101, 297
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	3 cut(s)	29, 77, 387
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	438, 465, 493
SatI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	13, 103, 299
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	29, 122, 198, 268, 310, 490
SfaNI	GCATC	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	29, 77, 387
Sse9I	AATT	3 cut(s)	131, 177, 351
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	251, 489
StyD4I	CCNGG	3 cut(s)	11, 101, 297
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	61, 231
TaqI	TCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	131, 177, 351
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	438, 465, 493
Tru9I	TTAA	3 cut(s)	438, 465, 493
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	5 cut(s)	40, 53, 263, 346, 416
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	2 cut(s)	251, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.