Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Reverse (-)

38283388 .. 38284383

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1295200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACTCAGACCAGGAGGATCTTCACCTTTGTGCTGAGGCTGCTGGCCTTGGCTGCTACTGTTTCTGCCACCATAGTTATGGTCAACAGCCACGACTCTACCAGGGTCTTGAACTTGACCTTCAAGGCCAAATTCAGTGATTCCCCAACTTTCACGTACTTTGTGATTGTGGAGGCAATTGTAAGTGGATACAACCTTATAATCCTGCTTCTTTCTTCAAAGGGCTCACTGTGGCGCATAGTTATCATCCTAGATGTGGTTGCAGCTCTTCTTCTTACTTCAAGCATGTCAGCAGCCTTGACGATAGCTCAAGTGGGGAAGAAAGGGAACACTCACGCTGGTTGGCTGCCAATTTGTGGACAAGTCTCCAAGTTTTGCAACCATGTCAGTGGAGCTCTTGTTGCTGGCATCCTTGCAGCAATATTTTACTATGTGCTTAATCTATTTACTCTTTACAATGTTCTTAATCCTCTCTTTGTGGCAAAACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

165

Amino Acids

17.81

Weight (kDa)

9.88

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	5 - 142	3.2e-38	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	356
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	256, 356
AgsI	TTSAA	4 cut(s)	112, 124, 219, 282
AjnI	CCWGG	2 cut(s)	11, 101
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	266, 308, 395
AluI	AGCT	3 cut(s)	266, 308, 395
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	45, 126
ApeKI	GCWGC	6 cut(s)	40, 53, 263, 293, 346, 416
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	227, 397
Bbv12I	GWGCWC	1 cut(s)	397
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	27, 40, 275, 305, 333, 428
BciT130I	CCWGG	2 cut(s)	13, 103
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
BlsI	GCNGC	6 cut(s)	42, 55, 265, 295, 348, 418
Bme1390I	CCNGG	2 cut(s)	13, 103
BmrFI	CCNGG	2 cut(s)	13, 103
BmsI	GCATC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	48, 102
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 356
BseBI	CCWGG	2 cut(s)	13, 103
BseDI	CCNNGG	2 cut(s)	48, 102
BseGI	GGATG	2 cut(s)	246, 408
BseLI	CCNNNNNNNGG	2 cut(s)	256, 356
BseMII	CTCAG	2 cut(s)	20, 26
BseXI	GCAGC	6 cut(s)	27, 40, 275, 305, 333, 428
BshFI	GGCC	2 cut(s)	47, 128
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	256, 356
BsmAI	GTCTC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	47, 128
Bsp1286I	GDGCHC	2 cut(s)	227, 397
Bsp143I	GATC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	47, 128
BspCNI	CTCAG	2 cut(s)	19, 27
BspPI	GGATC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	48, 102
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	13, 103
Bst4CI	ACNGT	2 cut(s)	61, 231
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	45, 406
BstDEI	CTNAG	2 cut(s)	6, 35
BstF5I	GGATG	2 cut(s)	246, 408
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 53, 401
BstNI	CCWGG	2 cut(s)	13, 103
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	11, 101
BstV1I	GCAGC	6 cut(s)	27, 40, 275, 305, 333, 428
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	2 cut(s)	79, 389
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	47, 128
BtsCI	GGATG	2 cut(s)	246, 408
BtsIMutI	CAGTG	3 cut(s)	142, 227, 394
Cac8I	GCNNGC	2 cut(s)	45, 406
CfoI	GCGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	286, 383
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	6, 35
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	227, 397
Eco53kI	GAGCTC	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	11, 101
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	227, 397
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	289, 386
FaiI	YATR	7 cut(s)	74, 80, 200, 239, 287, 384, 432
FatI	CATG	2 cut(s)	285, 382
Fnu4HI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
FokI	GGATG	2 cut(s)	233, 395
FriOI	GRGCYC	2 cut(s)	227, 397
Fsp4HI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
HaeIII	GGCC	2 cut(s)	47, 128
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	289, 386
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	4, 95, 140
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	85, 359
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	85, 359
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	61, 231
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	263, 378, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 53, 401
HpyF3I	CTNAG	2 cut(s)	6, 35
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	289, 386
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	25, 29, 88, 115, 218, 324, 390
Lsp1109I	GCAGC	6 cut(s)	27, 40, 275, 305, 333, 428
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	155
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	13, 207, 260, 263, 331
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	227, 397
MluCI	AATT	4 cut(s)	131, 177, 351, 490
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	9, 30, 166, 480
MseI	TTAA	3 cut(s)	438, 465, 493
MslI	CAYNNNNRTG	3 cut(s)	29, 77, 387
MspR9I	CCNGG	2 cut(s)	13, 103
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	13, 103
MwoI	GCNNNNNNNGC	3 cut(s)	40, 53, 401
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	289, 386
NspI	RCATGY	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	42, 55, 265, 295, 348, 418
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	11, 101
PspGI	CCWGG	2 cut(s)	11, 101
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	3 cut(s)	29, 77, 387
SacI	GAGCTC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	438, 465, 493
SatI	GCNGC	6 cut(s)	41, 54, 264, 294, 347, 417
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	13, 103
SduI	GDGCHC	2 cut(s)	227, 397
SetI	ASST	8 cut(s)	29, 122, 158, 198, 268, 310, 397, 490
SfaNI	GCATC	1 cut(s)	417
SmiMI	CAYNNNNRTG	3 cut(s)	29, 77, 387
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	131, 177, 351, 490
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	11, 101
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	61, 231
TaiI	ACGT	1 cut(s)	158
TasI	AATT	4 cut(s)	131, 177, 351, 490
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	438, 465, 493
Tru9I	TTAA	3 cut(s)	438, 465, 493
TscAI	CASTG	3 cut(s)	142, 234, 394
TseI	GCWGC	6 cut(s)	40, 53, 263, 293, 346, 416
TspRI	CASTG	3 cut(s)	142, 234, 394
Van91I	CCANNNNNTGG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.