Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031524.1

Orthogroup ID

OG0008048

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 408

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 322 bp

agcaattgcctgcgcgtacaaccttgtcattatgtttcttgcttccaagggctcgctttggcgcttggttatcatcctcgatgtggttgtagcggtgttacttgcttcaagtgtgtcatcggccttggcaatagcatatgtggggaagaaaggaaacacgcacgctggttggcttccgatttgtggacaagtcccaaagttctgcaagcatgtcactgctgctgttgttgctggcttcattgcagcaatcctgtattttcttcttgttatctataccctctacactgttcttcatcctctatttgttgtaagtaagtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0048037 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051536 GO:0051540 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

106

Amino Acids

11.29

Weight (kDa)

9.51

Isoelectric Point (pI)

21.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03700 AT4G03540
fragaria_vesca	FvH4_3g09260
malus_domestica	MD05G1313000.v1.1 MD09G1247600.v1.1 MD10G1295200.v1.1 MD17G1240500.v1.1
prunus_persica	Prupe.3G137700_v2.0.a1 Prupe.3G137700_v2.0.a1 Prupe.4G046800_v2.0.a1
pyrus_communis	pycom09g16510 pycom10g24700 pycom17g24380
rosa_chinensis	RchiOBHm_Chr5g0008311
rosa_laevigata	RLG00000031561
rosa_multiflora	Rmu_sc0021840.1_g000002 Rmu_sc0031524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068150
rosa_rugosa	Rorug04G0435000
rosa_samantha	Rh5AG063700 Rh5BG060200 Rh5CG070600 Rh5DG059700
rosa_wichuraiana	Rw5G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	83, 183
AgsI	TTSAA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	219, 243
AspLEI	GCGC	2 cut(s)	15, 64
BanII	GRGCYC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	206, 255
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	2 cut(s)	220, 244
BlsI	GCNGC	2 cut(s)	221, 245
BsaJI	CCNNGG	2 cut(s)	46, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 183
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	46, 124
BseGI	GGATG	2 cut(s)	73, 293
BseLI	CCNNNNNNNGG	2 cut(s)	83, 183
BseMI	GCAATG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	206, 255
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	83, 183
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	46, 124
BssT1I	CCWWGG	2 cut(s)	46, 124
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	5 cut(s)	11, 54, 163, 207, 233
BstF5I	GGATG	2 cut(s)	73, 293
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	15, 64
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	213
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	206, 255
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	73, 293
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	214, 283
Cac8I	GCNNGC	5 cut(s)	11, 54, 163, 207, 233
CfoI	GCGC	2 cut(s)	15, 64
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	4 cut(s)	52, 123, 173, 235
CviKI_1	RGCY	4 cut(s)	52, 123, 173, 235
CviQI	GTAC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	46, 124
Eco24I	GRGCYC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	46, 124
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	46, 124
FaeI	CATG	1 cut(s)	213
FaiI	YATR	5 cut(s)	33, 137, 139, 211, 274
FalI	AAGNNNNNCTT	1 cut(s)	302
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	220, 244
FokI	GGATG	2 cut(s)	60, 280
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	220, 244
GlaI	GCGC	2 cut(s)	14, 63
GluI	GCNGC	2 cut(s)	220, 244
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	2 cut(s)	15, 64
Hin1II	CATG	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	13, 62
HinP1I	GCGC	2 cut(s)	13, 62
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	205, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	213
HspAI	GCGC	2 cut(s)	13, 62
LpnPI	CCDG	4 cut(s)	23, 151, 217, 264
Lsp1109I	GCAGC	2 cut(s)	206, 255
MaeIII	GTNAC	2 cut(s)	97, 212
MboII	GAAGA	3 cut(s)	158, 252, 282
MfeI	CAATTG	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	4
MnlI	CCTC	3 cut(s)	87, 288, 307
MunI	CAATTG	1 cut(s)	4
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeI	CATATG	1 cut(s)	137
NlaIII	CATG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	221, 245
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SatI	GCNGC	2 cut(s)	220, 244
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	1 cut(s)	25
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	1 cut(s)	93
StyI	CCWWGG	2 cut(s)	46, 124
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	4
TscAI	CASTG	2 cut(s)	221, 290
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	219, 243
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	227, 282
TspRI	CASTG	2 cut(s)	221, 290
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.