Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Forward (+)

7254029 .. 7256406

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATTCCTTACGCTACAGTCGAAGAAGCTTCAATCGCACTGGGACGAAACCTCACACGTCTCGAAACTCTATGGTTCGATTACTCCGCCACGAAGTCCGATTACTATCTCTACTGTCACAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCTCTCCCTCTCGTTTTCGTCGAATTGGCTCGATCTGCTTCTGGTTTGTTTAATCGGTATAAGATCCAGCCTAAGGTTAATTACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATGACGATGTTTATCCTCGTCGTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGATCTGGATTACCATTACCAACAATTACAGAGATGCTGTCACAGTTAGTAGTCTACTTCTTGATAGAAGACTACACTAACTACTGGGTACATAGATTCTTTCATAGTAAATGGGGATACGATAAGATTCATCGAGTTCATCACGAGTACACAGCTCCTATAGGATATGCTGCTCCTTATGCACATTGGGCTGAAGTTTTGCTTCTCGGAATCCCGACGTTTATGGGACCAGCTATTGCTCCTGGTCATATGATAACCTTTTGGTTGTGGATTGCTTTAAGGCAAATGGAAGCTATTGAGACTCACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCCTTTCTACGGTGGTGCTGAGTACCATGACTATCATCACTACGTTGGAGGACAAAGTCAAAGCAACTTCGCTTCAGTGTTCACGTACTGTGATTACATTTATGGAACTGACAAGGGTTACAGATTCCAAAAGAAGCTTCTTGAGCAGATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

298

Amino Acids

34.65

Weight (kDa)

7.22

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	133 - 267	1.6e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	561, 750
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	4 cut(s)	438, 497, 716, 779
AfiI	CCNNNNNNNGG	2 cut(s)	229, 701
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	33, 259
AjiI	CACGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	813, 845
AluBI	AGCT	5 cut(s)	29, 503, 581, 641, 829
AluI	AGCT	5 cut(s)	29, 503, 581, 641, 829
Alw26I	GTCTC	2 cut(s)	65, 641
AlwI	GGATC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	302, 575
AvaII	GGWCC	2 cut(s)	302, 575
AxyI	CCTNAGG	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BauI	CACGAG	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	136, 423
BbvI	GCAGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	65, 641
BfmI	CTRYAG	2 cut(s)	15, 507
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	591
Bme18I	GGWCC	2 cut(s)	302, 575
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	302, 575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	591
BmrI	ACTGGG	2 cut(s)	50, 442
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	2 cut(s)	50, 442
BpiI	GAAGAC	2 cut(s)	136, 423
BpuEI	CTTGAG	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	777
BsaBI	GATNNNNATC	2 cut(s)	105, 287
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 701
Bse1I	ACTGG	2 cut(s)	45, 437
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	2 cut(s)	105, 287
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	671
BseGI	GGATG	1 cut(s)	690
BseJI	GATNNNNATC	2 cut(s)	105, 287
BseLI	CCNNNNNNNGG	2 cut(s)	229, 701
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	2 cut(s)	45, 437
BseXI	GCAGC	1 cut(s)	505
BslFI	GGGAC	2 cut(s)	57, 588
BslI	CCNNNNNNNGG	2 cut(s)	229, 701
BsmAI	GTCTC	2 cut(s)	65, 641
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	57, 588
Bsp143I	GATC	4 cut(s)	188, 219, 350, 840
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	45, 437
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	4 cut(s)	188, 219, 350, 840
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	671
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	6 cut(s)	19, 116, 393, 656, 704, 782
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	777
BstDEI	CTNAG	2 cut(s)	228, 711
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	690
BstKTI	GATC	4 cut(s)	191, 222, 353, 843
BstMAI	GTCTC	2 cut(s)	65, 641
BstMBI	GATC	4 cut(s)	188, 219, 350, 840
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 191, 527, 536, 835
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	2 cut(s)	15, 507
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	2 cut(s)	136, 423
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	38, 661, 774
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	302, 575
Csp6I	GTAC	4 cut(s)	437, 496, 715, 778
CviAII	CATG	3 cut(s)	277, 672, 719
CviJI	RGCY	8 cut(s)	29, 185, 226, 503, 539, 581, 641, 829
CviKI_1	RGCY	8 cut(s)	29, 185, 226, 503, 539, 581, 641, 829
CviQI	GTAC	4 cut(s)	437, 496, 715, 778
DdeI	CTNAG	2 cut(s)	228, 711
DpnI	GATC	4 cut(s)	190, 221, 352, 842
DpnII	GATC	4 cut(s)	188, 219, 350, 840
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	671
Eco47I	GGWCC	2 cut(s)	302, 575
Eco57I	CTGAAG	2 cut(s)	561, 750
Eco81I	CCTNAGG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	280, 675, 722
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	2 cut(s)	57, 588
FatI	CATG	3 cut(s)	276, 671, 718
FauNDI	CATATG	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	1 cut(s)	519
GluI	GCNGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	280, 675, 722
HindIII	AAGCTT	2 cut(s)	27, 827
HinfI	GANTC	9 cut(s)	4, 331, 444, 475, 558, 649, 676, 816, 848
Hpy166II	GTNNAC	3 cut(s)	403, 498, 774
Hpy188I	TCNGA	5 cut(s)	100, 250, 336, 557, 892
Hpy188III	TCNNGA	7 cut(s)	62, 277, 354, 409, 491, 562, 833
Hpy8I	GTNNAC	3 cut(s)	403, 498, 774
Hpy99I	CGWCG	4 cut(s)	179, 299, 568, 856
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	6 cut(s)	19, 116, 393, 656, 704, 782
HpyCH4IV	ACGT	5 cut(s)	58, 273, 566, 735, 776
HpyCH4V	TGCA	2 cut(s)	310, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 191, 527, 536, 835
HpyF3I	CTNAG	2 cut(s)	228, 711
HpySE526I	ACGT	5 cut(s)	58, 273, 566, 735, 776
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	280, 675, 722
Kzo9I	GATC	4 cut(s)	188, 219, 350, 840
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	3 cut(s)	508, 526, 592
LpnPI	CCDG	8 cut(s)	26, 183, 236, 339, 418, 576, 591, 603
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	5 cut(s)	58, 273, 566, 735, 776
MaeIII	GTNAC	4 cut(s)	116, 263, 387, 809
MalI	GATC	4 cut(s)	190, 221, 352, 842
MboI	GATC	4 cut(s)	188, 219, 350, 840
MboII	GAAGA	5 cut(s)	35, 136, 428, 868, 871
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	3 cut(s)	179, 235, 372
MlyI	GAGTC	3 cut(s)	643, 685, 857
MmeI	TCCRAC	2 cut(s)	704, 718
MnlI	CCTC	7 cut(s)	62, 149, 168, 174, 302, 734, 872
MseI	TTAA	3 cut(s)	207, 234, 626
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	5 cut(s)	35, 191, 527, 536, 835
NcoI	CCATGG	1 cut(s)	671
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	4 cut(s)	188, 219, 350, 840
NlaIII	CATG	3 cut(s)	280, 675, 722
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	116, 387
PagI	TCATGA	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 174
PfeI	GAWTC	6 cut(s)	4, 331, 444, 475, 558, 816
PflFI	GACNNNGTC	1 cut(s)	747
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	3 cut(s)	643, 684, 856
PpsI	GAGTC	3 cut(s)	643, 684, 856
Ppu21I	YACGTR	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	302, 575
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	747
RsaI	GTAC	4 cut(s)	438, 497, 716, 779
RsaNI	GTAC	4 cut(s)	437, 496, 715, 778
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	207, 234, 626
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	4 cut(s)	188, 219, 350, 840
Sau96I	GGNCC	2 cut(s)	302, 575
SchI	GAGTC	3 cut(s)	643, 685, 857
ScrFI	CCNGG	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	15, 507
SinI	GGWCC	2 cut(s)	302, 575
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	3 cut(s)	179, 235, 372
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	6 cut(s)	19, 116, 393, 656, 704, 782
TaiI	ACGT	5 cut(s)	61, 276, 569, 738, 779
TaqI	TCGA	8 cut(s)	21, 63, 78, 177, 187, 329, 481, 854
TasI	AATT	3 cut(s)	179, 235, 372
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	6 cut(s)	4, 331, 444, 475, 558, 816
Tru1I	TTAA	3 cut(s)	207, 234, 626
Tru9I	TTAA	3 cut(s)	207, 234, 626
TscAI	CASTG	3 cut(s)	45, 661, 774
TseFI	GTSAC	2 cut(s)	116, 387
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	116, 387
TspDTI	ATGAA	3 cut(s)	440, 467, 476
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	3 cut(s)	45, 661, 774
Tth111I	GACNNNGTC	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	302, 575
XmiI	GTMKAC	1 cut(s)	402
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.