Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000083.1

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

141316 .. 142281

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000083.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggtgtattttattatagaggatttcggaaattattggatccatcgactactccactcaaaatggggctacgacaagatccaccggatccaccatgaatacgctgctccgattgggcttgcagcaccatatgcccattgggcggaaattttgatcctcggcattcctgcatttctcgccccagcattggttcccggccacattgtcacatactggttatggttcattttgcgacaaatggaagccattgagactcatagcgggtacaacttcccttggagtccctcaaaatacatcccattctatggaggtgcagagtaccatgactatcatcactatgttggagaacaaagtcagagcaacttcgcatcagtgttcacttattgcgattacatctatggaactgacaaggggtataggtatcggaagcaagcccttgagaagttggcgaagctgagacacgaggatgagggcagacgagaagacgagccgtatcacattcctgccgaggatcggaaatctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

175

Amino Acids

20.79

Weight (kDa)

6.34

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	2 cut(s)	143, 261
AclWI	GGATC	7 cut(s)	34, 47, 73, 82, 95, 148, 519
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	2 cut(s)	266, 320
AfiI	CCNNNNNNNGG	4 cut(s)	142, 187, 305, 513
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	2 cut(s)	245, 451
AlwI	GGATC	7 cut(s)	34, 47, 73, 82, 95, 148, 519
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	104, 122
ApoI	RAATTY	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	195
BamHI	GGATCC	2 cut(s)	39, 87
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	91, 134
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	245, 451
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	105, 123
BlsI	GCNGC	2 cut(s)	106, 124
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	3 cut(s)	41, 89, 192
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	157, 275, 507
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 187, 305, 513
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	157, 275, 507
BseGI	GGATG	2 cut(s)	294, 472
BseLI	CCNNNNNNNGG	4 cut(s)	142, 187, 305, 513
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	91, 134
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	85, 195
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	142, 187, 305, 513
BsmAI	GTCTC	2 cut(s)	245, 451
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	39, 78, 87, 153, 511
BspACI	CCGC	2 cut(s)	143, 261
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	41, 89, 192
BspPI	GGATC	7 cut(s)	34, 47, 73, 82, 95, 148, 519
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	157, 275, 507
BssMI	GATC	5 cut(s)	39, 78, 87, 153, 511
BssSI	CACGAG	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	120, 432
BstDEI	CTNAG	2 cut(s)	455, 522
BstF5I	GGATG	2 cut(s)	294, 472
BstKTI	GATC	5 cut(s)	42, 81, 90, 156, 514
BstMAI	GTCTC	2 cut(s)	245, 451
BstMBI	GATC	5 cut(s)	39, 78, 87, 153, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 176
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	91, 134
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	3 cut(s)	39, 78, 87
BstYI	RGATCY	3 cut(s)	39, 78, 87
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	294, 472
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	120, 432
Csp6I	GTAC	2 cut(s)	265, 319
CviAII	CATG	2 cut(s)	95, 323
CviJI	RGCY	7 cut(s)	69, 118, 198, 245, 434, 454, 490
CviKI_1	RGCY	7 cut(s)	69, 118, 198, 245, 434, 454, 490
CviQI	GTAC	2 cut(s)	265, 319
DdeI	CTNAG	2 cut(s)	455, 522
DpnI	GATC	5 cut(s)	41, 80, 89, 155, 513
DpnII	GATC	5 cut(s)	39, 78, 87, 153, 511
EaeI	YGGCCR	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	98, 326
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	94, 322
FauI	CCCGC	1 cut(s)	254
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	105, 123
FokI	GGATG	2 cut(s)	281, 479
Fsp4HI	GCNGC	2 cut(s)	105, 123
GluI	GCNGC	2 cut(s)	105, 123
GsaI	CCCAGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	85, 195
Hin1II	CATG	2 cut(s)	98, 326
HinfI	GANTC	2 cut(s)	253, 280
HpaII	CCGG	2 cut(s)	85, 195
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	5 cut(s)	29, 111, 357, 426, 516
Hpy8I	GTNNAC	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	122, 170, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 176
HpyF3I	CTNAG	2 cut(s)	455, 522
Hsp92II	CATG	2 cut(s)	98, 326
Kzo9I	GATC	5 cut(s)	39, 78, 87, 153, 511
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	98, 180, 195, 199, 208, 516
Lsp1109I	GCAGC	2 cut(s)	91, 134
LweI	GCATC	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	5 cut(s)	41, 80, 89, 155, 513
MboI	GATC	5 cut(s)	39, 78, 87, 153, 511
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	3 cut(s)	39, 78, 87
MluCI	AATT	2 cut(s)	31, 147
MlyI	GAGTC	2 cut(s)	247, 289
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	7 cut(s)	13, 167, 295, 302, 457, 463, 502
MslI	CAYNNNNRTG	2 cut(s)	336, 465
MspI	CCGG	2 cut(s)	85, 195
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 176
NciI	CCSGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	5 cut(s)	39, 78, 87, 153, 511
NlaIII	CATG	2 cut(s)	98, 326
NlaIV	GGNNCC	3 cut(s)	41, 89, 192
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	106, 124
PleI	GAGTC	2 cut(s)	247, 288
PpsI	GAGTC	2 cut(s)	247, 288
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	41, 89, 192
PsuI	RGATCY	3 cut(s)	39, 78, 87
RsaI	GTAC	2 cut(s)	266, 320
RsaNI	GTAC	2 cut(s)	265, 319
RseI	CAYNNNNRTG	2 cut(s)	336, 465
SatI	GCNGC	2 cut(s)	105, 123
Sau3AI	GATC	5 cut(s)	39, 78, 87, 153, 511
SchI	GAGTC	2 cut(s)	247, 289
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	3 cut(s)	313, 422, 456
SfaNI	GCATC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	336, 465
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	31, 147
SsiI	CCGC	2 cut(s)	143, 261
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	275
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	31, 147
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	104, 122
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	111, 214
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.