Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

9787965 .. 9790808

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTGCCCTACCAGACCATCGAAGAGGCCTCGGCGGCCTTGAGCCGAAACCTCACCTTCGCCGAGACACTGTGGTTCAACTACTCTGCTTCCAAGTCCGATTACGTCCTCTACTGCCACAACATTCTCTTCCTCTTCGTCGTCTTCTCCCTCGTCCCTCTCCCTCTGGTTTTCATGGAGGTTCTCAGGTGGGCCGGCCTCGATCGCTACAAGATCCAGCCCAAAGTCCGATTGCCCTTCTCTGACATGTTAAAGTGCTACAAGGACGTCATGTGGATGTTCTTTTTCATCGTCGGCCCCCTGCAGCTCGTCTCTTACCCTTCAATCCAGTTAATCGGAATTCGAACGGGATTGCCATTGCCTTCTGGATGGGAGATGCTTTGCCAATTGTTAGTTTATTTCTTGGTAGAAGATTATACCAACTACTGGATCCACAGATTTTTACATAATAAATGGGGGTATGAGAAAATCCATCGAGTTCACCACGAGTACACTGCTCCGATTGGATTTGCAGCGCCATATGCTCATTGGGCTGAGATTTTGATCCTTGGTATCCCATCTTTTCTCGGTCCGGCCTTGGTTCCTGGCCACATGGTCACATTCTGGTCGTGGATAGCATTGCGGCAGATTGAGGCCATAGAAACGCACAGCGGTTATGACTTCCCCTGGACTCCCACAAAGTATATCCCATTTTATGGCGGTGCTGAGTATCATGATTACCATCATTACGTTGGAGGACAAAGCCAGAGTAATTTTGCTTCAGTGTTCACCTACTGTGATTACATTTATGGAACAGAAAAGGGATATCGTTTCCAGAAGAAGATCCTTAAGAAGTTGAACGAGGAAACTGCCGGTGTCCAAAATGGAGGCTCCGTAGATCTTAAATCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

298

Amino Acids

34.57

Weight (kDa)

6.63

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccB7I	CCANNNNNTGG	2 cut(s)	426, 695
AciI	CCGC	4 cut(s)	35, 622, 651, 699
AclWI	GGATC	5 cut(s)	208, 424, 437, 538, 817
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	744
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	426, 695
AflII	CTTAAG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	79, 324, 838
AjnI	CCWGG	2 cut(s)	583, 665
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw26I	GTCTC	2 cut(s)	59, 316
AlwI	GGATC	5 cut(s)	208, 424, 437, 538, 817
AoxI	GGCC	8 cut(s)	27, 36, 192, 196, 295, 573, 586, 633
ApeKI	GCWGC	3 cut(s)	4, 304, 512
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	192, 296, 569
AsuHPI	GGTGA	3 cut(s)	46, 473, 760
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	316, 524
BccI	CCATC	5 cut(s)	26, 363, 480, 565, 729
BcgI	CGANNNNNNTGC	4 cut(s)	476, 510, 830, 864
BciT130I	CCWGG	2 cut(s)	585, 667
BciVI	GTATCC	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	59, 316
BfmI	CTRYAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	563
BglI	GCCNNNNNGGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	5 cut(s)	5, 36, 305, 513, 623
BlsI	GCNGC	5 cut(s)	6, 37, 306, 514, 624
Bme1390I	CCNGG	2 cut(s)	585, 667
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	192, 296, 569
BmiI	GGNNCC	4 cut(s)	298, 431, 582, 871
BmrFI	CCNGG	2 cut(s)	585, 667
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	61
BsaBI	GATNNNNATC	2 cut(s)	542, 720
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	30, 547, 576, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 695
Bse118I	RCCGGY	2 cut(s)	194, 851
Bse1I	ACTGG	2 cut(s)	328, 431
Bse3DI	GCAATG	2 cut(s)	356, 617
Bse8I	GATNNNNATC	2 cut(s)	542, 720
BseBI	CCWGG	2 cut(s)	585, 667
BseDI	CCNNGG	4 cut(s)	30, 547, 576, 665
BseGI	GGATG	2 cut(s)	282, 374
BseJI	GATNNNNATC	2 cut(s)	542, 720
BseLI	CCNNNNNNNGG	2 cut(s)	426, 695
BseMI	GCAATG	2 cut(s)	356, 617
BseMII	CTCAG	3 cut(s)	199, 525, 696
BseNI	ACTGG	2 cut(s)	328, 431
BseXI	GCAGC	2 cut(s)	316, 524
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	8 cut(s)	29, 38, 194, 198, 297, 575, 588, 635
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	195, 572, 852
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	426, 695
BsmAI	GTCTC	2 cut(s)	59, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	8 cut(s)	29, 38, 194, 198, 297, 575, 588, 635
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
BspACI	CCGC	4 cut(s)	35, 622, 651, 699
BspANI	GGCC	8 cut(s)	29, 38, 194, 198, 297, 575, 588, 635
BspCNI	CTCAG	3 cut(s)	198, 526, 697
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	4 cut(s)	298, 431, 582, 871
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	5 cut(s)	208, 424, 437, 538, 817
BspT104I	TTCGAA	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	2 cut(s)	356, 617
BsrFI	RCCGGY	2 cut(s)	194, 851
BsrI	ACTGG	2 cut(s)	328, 431
BssAI	RCCGGY	2 cut(s)	194, 851
BssECI	CCNNGG	4 cut(s)	30, 547, 576, 665
BssMI	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	547, 576
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	585, 667
Bst4CI	ACNGT	2 cut(s)	72, 776
Bst6I	CTCTTC	3 cut(s)	18, 134, 140
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	827
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	185, 534, 705
BstF5I	GGATG	2 cut(s)	282, 374
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	6 cut(s)	205, 216, 432, 546, 825, 880
BstMAI	GTCTC	2 cut(s)	59, 316
BstMBI	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 204, 521, 530
BstNI	CCWGG	2 cut(s)	585, 667
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	583, 665
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	316, 524
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	4 cut(s)	213, 429, 822, 877
BstYI	RGATCY	4 cut(s)	213, 429, 822, 877
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	8 cut(s)	29, 38, 194, 198, 297, 575, 588, 635
BtsCI	GGATG	2 cut(s)	282, 374
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	68, 492, 768
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	2 cut(s)	194, 851
Cfr13I	GGNCC	3 cut(s)	192, 296, 569
CpoI	CGGWCCG	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	490
CspI	CGGWCCG	1 cut(s)	569
CviAII	CATG	5 cut(s)	175, 247, 271, 592, 713
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	3 cut(s)	185, 534, 705
DpnI	GATC	6 cut(s)	204, 215, 431, 545, 824, 879
DpnII	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	3 cut(s)	18, 134, 140
EarI	CTCTTC	3 cut(s)	18, 134, 140
Eco130I	CCWWGG	2 cut(s)	547, 576
Eco147I	AGGCCT	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	744
EcoRI	GAATTC	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	583, 665
EcoRV	GATATC	1 cut(s)	806
EcoT14I	CCWWGG	2 cut(s)	547, 576
ErhI	CCWWGG	2 cut(s)	547, 576
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	5 cut(s)	178, 250, 274, 595, 716
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	174, 246, 270, 591, 712
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	5 cut(s)	5, 36, 305, 513, 623
FokI	GGATG	2 cut(s)	289, 381
FseI	GGCCGGCC	1 cut(s)	198
Fsp4HI	GCNGC	5 cut(s)	5, 36, 305, 513, 623
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	5 cut(s)	5, 36, 305, 513, 623
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	8 cut(s)	29, 38, 194, 198, 297, 575, 588, 635
HapII	CCGG	3 cut(s)	195, 572, 852
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	178, 250, 274, 595, 716
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	1 cut(s)	670
HpaII	CCGG	3 cut(s)	195, 572, 852
HphI	GGTGA	3 cut(s)	46, 473, 760
Hpy166II	GTNNAC	3 cut(s)	481, 492, 768
Hpy188I	TCNGA	6 cut(s)	100, 230, 244, 338, 501, 889
Hpy188III	TCNNGA	3 cut(s)	366, 713, 814
Hpy8I	GTNNAC	3 cut(s)	481, 492, 768
Hpy99I	CGWCG	2 cut(s)	143, 296
HpyAV	CCTTC	4 cut(s)	67, 247, 330, 372
HpyCH4III	ACNGT	2 cut(s)	72, 776
HpyCH4IV	ACGT	3 cut(s)	105, 267, 729
HpyCH4V	TGCA	2 cut(s)	304, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 204, 521, 530
HpyF3I	CTNAG	3 cut(s)	185, 534, 705
HpySE526I	ACGT	3 cut(s)	105, 267, 729
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	178, 250, 274, 595, 716
HspAI	GCGC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
LmnI	GCTCC	2 cut(s)	502, 875
Lsp1109I	GCAGC	2 cut(s)	316, 524
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	3 cut(s)	105, 267, 729
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	6 cut(s)	204, 215, 431, 545, 824, 879
MboI	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
MboII	GAAGA	7 cut(s)	35, 121, 127, 136, 422, 829, 832
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	4 cut(s)	213, 429, 822, 877
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	3 cut(s)	339, 386, 751
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	712
Mox20I	TGGCCA	1 cut(s)	588
MroNI	GCCGGC	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	4 cut(s)	251, 332, 828, 882
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	3 cut(s)	195, 572, 852
MspR9I	CCNGG	2 cut(s)	585, 667
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	585, 667
MwoI	GCNNNNNNNGC	4 cut(s)	35, 204, 521, 530
NaeI	GCCGGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	178, 250, 274, 595, 716
NlaIV	GGNNCC	4 cut(s)	298, 431, 582, 871
NmeAIII	GCCGAG	2 cut(s)	11, 88
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	343
PagI	TCATGA	1 cut(s)	712
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	196
PflMI	CCANNNNNTGG	2 cut(s)	426, 695
PkrI	GCNGC	5 cut(s)	6, 37, 306, 514, 624
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PscI	ACATGT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	583, 665
PspGI	CCWGG	2 cut(s)	583, 665
PspN4I	GGNNCC	4 cut(s)	298, 431, 582, 871
PspPI	GGNCC	3 cut(s)	192, 296, 569
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	4 cut(s)	213, 429, 822, 877
PvuI	CGATCG	1 cut(s)	205
RigI	GGCCGGCC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	275
Rsr2I	CGGWCCG	1 cut(s)	569
RsrII	CGGWCCG	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	251, 332, 828, 882
SatI	GCNGC	5 cut(s)	5, 36, 305, 513, 623
Sau3AI	GATC	6 cut(s)	202, 213, 429, 543, 822, 877
Sau96I	GGNCC	3 cut(s)	192, 296, 569
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	585, 667
SetI	ASST	9 cut(s)	54, 59, 108, 183, 191, 270, 309, 732, 773
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	302
SfiI	GGCCNNNNNGGCC	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	40, 827
SmoI	CTYRAG	2 cut(s)	40, 827
Sse9I	AATT	3 cut(s)	339, 386, 751
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	35, 622, 651, 699
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	583, 665
StyI	CCWWGG	2 cut(s)	547, 576
TaaI	ACNGT	2 cut(s)	72, 776
TaiI	ACGT	3 cut(s)	108, 270, 732
TaqI	TCGA	4 cut(s)	21, 201, 343, 475
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	339, 386, 751
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	38, 625
Tru1I	TTAA	4 cut(s)	251, 332, 828, 882
Tru9I	TTAA	4 cut(s)	251, 332, 828, 882
TscAI	CASTG	3 cut(s)	75, 499, 768
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	4, 304, 512
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	163, 277
TspGWI	ACGGA	1 cut(s)	862
TspRI	CASTG	3 cut(s)	75, 499, 768
Van91I	CCANNNNNTGG	2 cut(s)	426, 695
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	2 cut(s)	525, 728
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.