Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

9414989 .. 9419808

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTGCCTTACCAGACTCTCGAGGAGGCCGCTTCGGCTCTGGGCCGAAACCTCACCTTTGCCGAGACTCTGTGGTTCAACTACTCGGCTTCCAAGTCCGATTACGTGCTCTACCTCCACAACATTCTCTTCCTCTTCGTCATCTTCTCCGTCGTTCCTCTCCCTCTCGTTTTCGCCGAGGTTCTCAGCTGGGCCGGTCTCGACCGCTACAAGATCCAGCCCAAAGTCCGATTGCCCTTCTCTGACATGCTCAAGTGCTACAAGGATGTTATGCGCATGTTCATTCTCATTGTTGGCCCTCTTCAGCTCGTCTCTTACCCTTCTGTCCAGATAATAGGGATTCGAACGGGATTGCCATTGCCTTCTGGATGGGAGATGCTTTGCCAATTGCTAGTTTATTTCTTGGTAGAAGATTATACCAACTACTGGATTCACAGATTTTTGCATAACAAATGGGGGTATGAGAAAATCCACAGAGTTCACCATGAGTACACTGCTCCAATTGGGTTTGCAGCTCCATATGCTCATTGGGCTGAGATTTTGATACTTGGTATCCCATCTTTTCTCGGTCCGGCAATGGTTCCTGGCCACATGGTCACATTCTGGTCGTGGATAGCACTGCGGCAGGTTGAGGCCATTGAAACACACAGCGGTTATGACTTCCCCTGGACTCCCACAAAATATATCCCATTTTATGGCGGTGCTGAGTACCATGATTACCATCACTATGTTGGAGGACAAAGCCAGAGCAATTTTGCTTCAGTGTTCACCTACTGTGATTTCATTTATGGAACTGACAAGGGATTTCGGTATCAGAAGAAGATCCTTAAGAAGTTGAAAGAGGAAAGTAACGCTGTCCAAAACGGAGGCTCATATAATAATTCTACTGTAGATCTTAAATCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

303

Amino Acids

34.92

Weight (kDa)

6.86

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	616
AccB7I	CCANNNNNTGG	2 cut(s)	426, 695
AciI	CCGC	5 cut(s)	30, 205, 622, 651, 699
AclWI	GGATC	2 cut(s)	208, 817
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	287, 744
AfaI	GTAC	2 cut(s)	491, 710
AfiI	CCNNNNNNNGG	2 cut(s)	426, 695
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	3 cut(s)	79, 641, 838
AjnI	CCWGG	2 cut(s)	583, 665
AluBI	AGCT	3 cut(s)	189, 307, 515
AluI	AGCT	3 cut(s)	189, 307, 515
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	59, 203, 316
AlwI	GGATC	2 cut(s)	208, 817
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	6 cut(s)	27, 43, 192, 295, 586, 633
ApeKI	GCWGC	2 cut(s)	4, 512
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	4 cut(s)	43, 192, 296, 569
AsuHPI	GGTGA	3 cut(s)	46, 473, 760
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	3 cut(s)	363, 565, 729
BciT130I	CCWGG	2 cut(s)	585, 667
BciVI	GTATCC	1 cut(s)	563
BcoDI	GTCTC	3 cut(s)	59, 203, 316
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	888
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	563
BglI	GCCNNNNNGGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	4 cut(s)	5, 30, 513, 623
BlsI	GCNGC	4 cut(s)	6, 31, 514, 624
Bme1390I	CCNGG	2 cut(s)	585, 667
Bme18I	GGWCC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	4 cut(s)	43, 192, 296, 569
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	585, 667
BmsI	GCATC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	177, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 695
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	356, 582
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	585, 667
BseDI	CCNNGG	2 cut(s)	177, 665
BseGI	GGATG	2 cut(s)	271, 374
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	426, 695
BseMI	GCAATG	2 cut(s)	356, 582
BseMII	CTCAG	3 cut(s)	199, 525, 696
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	6 cut(s)	29, 45, 194, 297, 588, 635
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	195, 572
BslI	CCNNNNNNNGG	2 cut(s)	426, 695
BsmAI	GTCTC	3 cut(s)	59, 203, 316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	6 cut(s)	29, 45, 194, 297, 588, 635
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	213, 822, 892
BspACI	CCGC	5 cut(s)	30, 205, 622, 651, 699
BspANI	GGCC	6 cut(s)	29, 45, 194, 297, 588, 635
BspCNI	CTCAG	3 cut(s)	198, 526, 697
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	208, 817
BspT104I	TTCGAA	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	356, 582
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	177, 665
BssMI	GATC	3 cut(s)	213, 822, 892
Bst2UI	CCWGG	2 cut(s)	585, 667
Bst4CI	ACNGT	2 cut(s)	776, 889
Bst6I	CTCTTC	3 cut(s)	134, 140, 306
BstAFI	CTTAAG	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	185, 534, 705
BstF5I	GGATG	2 cut(s)	271, 374
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	216, 825, 895
BstMAI	GTCTC	3 cut(s)	59, 203, 316
BstMBI	GATC	3 cut(s)	213, 822, 892
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
BstNI	CCWGG	2 cut(s)	585, 667
BstNSI	RCATGY	2 cut(s)	250, 280
BstSCI	CCNGG	2 cut(s)	583, 665
BstSFI	CTRYAG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	3 cut(s)	213, 822, 892
BstYI	RGATCY	3 cut(s)	213, 822, 892
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	6 cut(s)	29, 45, 194, 297, 588, 635
BtsCI	GGATG	2 cut(s)	271, 374
BtsI	GCAGTG	2 cut(s)	492, 617
BtsIMutI	CAGTG	3 cut(s)	492, 617, 768
BveI	ACCTGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	4 cut(s)	43, 192, 296, 569
CpoI	CGGWCCG	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	490, 709
CspI	CGGWCCG	1 cut(s)	569
CviAII	CATG	5 cut(s)	247, 277, 485, 592, 713
CviQI	GTAC	2 cut(s)	490, 709
DdeI	CTNAG	3 cut(s)	185, 534, 705
DpnI	GATC	3 cut(s)	215, 824, 894
DpnII	GATC	3 cut(s)	213, 822, 892
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	3 cut(s)	134, 140, 306
EarI	CTCTTC	3 cut(s)	134, 140, 306
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	287, 744
Eco88I	CYCGRG	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	583, 665
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	5 cut(s)	250, 280, 488, 595, 716
FatI	CATG	5 cut(s)	246, 276, 484, 591, 712
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	5, 30, 513, 623
FokI	GGATG	2 cut(s)	278, 381
Fsp4HI	GCNGC	4 cut(s)	5, 30, 513, 623
FspAI	RTGCGCAY	1 cut(s)	275
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	4 cut(s)	5, 30, 513, 623
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	6 cut(s)	29, 45, 194, 297, 588, 635
HapII	CCGG	2 cut(s)	195, 572
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	250, 280, 488, 595, 716
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	5 cut(s)	16, 67, 340, 430, 670
HpaII	CCGG	2 cut(s)	195, 572
HphI	GGTGA	3 cut(s)	46, 473, 760
Hpy166II	GTNNAC	3 cut(s)	481, 492, 768
Hpy188I	TCNGA	5 cut(s)	100, 230, 244, 816, 904
Hpy188III	TCNNGA	4 cut(s)	20, 200, 328, 366
Hpy8I	GTNNAC	3 cut(s)	481, 492, 768
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	247, 330, 372
HpyCH4III	ACNGT	2 cut(s)	776, 889
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	445, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
HpyF3I	CTNAG	3 cut(s)	185, 534, 705
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	250, 280, 488, 595, 716
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	213, 822, 892
LmnI	GCTCC	2 cut(s)	502, 520
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	595, 848
MalI	GATC	3 cut(s)	215, 824, 894
MboI	GATC	3 cut(s)	213, 822, 892
MboII	GAAGA	7 cut(s)	121, 127, 136, 293, 422, 829, 832
MfeI	CAATTG	2 cut(s)	386, 501
MflI	RGATCY	3 cut(s)	213, 822, 892
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	4 cut(s)	386, 501, 751, 880
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	3 cut(s)	10, 61, 664
MmeI	TCCRAC	1 cut(s)	712
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	2 cut(s)	828, 897
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	189, 651
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	2 cut(s)	195, 572
MspR9I	CCNGG	2 cut(s)	585, 667
MunI	CAATTG	2 cut(s)	386, 501
MvaI	CCWGG	2 cut(s)	585, 667
MwoI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	213, 822, 892
NlaIII	CATG	5 cut(s)	250, 280, 488, 595, 716
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	3 cut(s)	65, 88, 202
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	275
NspI	RCATGY	2 cut(s)	250, 280
NspV	TTCGAA	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	340, 430
PflMI	CCANNNNNTGG	2 cut(s)	426, 695
PkrI	GCNGC	4 cut(s)	6, 31, 514, 624
PleI	GAGTC	3 cut(s)	10, 61, 664
PpsI	GAGTC	3 cut(s)	10, 61, 664
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	583, 665
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	583, 665
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	4 cut(s)	43, 192, 296, 569
PsuI	RGATCY	3 cut(s)	213, 822, 892
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	2 cut(s)	491, 710
RsaNI	GTAC	2 cut(s)	490, 709
RseI	CAYNNNNRTG	1 cut(s)	726
Rsr2I	CGGWCCG	1 cut(s)	569
RsrII	CGGWCCG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	828, 897
SatI	GCNGC	4 cut(s)	5, 30, 513, 623
Sau3AI	GATC	3 cut(s)	213, 822, 892
Sau96I	GGNCC	4 cut(s)	43, 192, 296, 569
SchI	GAGTC	3 cut(s)	10, 61, 664
ScrFI	CCNGG	2 cut(s)	585, 667
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	888
Sfr274I	CTCGAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	3 cut(s)	20, 251, 827
SmoI	CTYRAG	3 cut(s)	20, 251, 827
Sse9I	AATT	4 cut(s)	386, 501, 751, 880
SsiI	CCGC	5 cut(s)	30, 205, 622, 651, 699
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	583, 665
TaaI	ACNGT	2 cut(s)	776, 889
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	21, 201, 343
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	4 cut(s)	386, 501, 751, 880
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	32, 625
TfiI	GAWTC	2 cut(s)	340, 430
Tru1I	TTAA	2 cut(s)	828, 897
Tru9I	TTAA	2 cut(s)	828, 897
TscAI	CASTG	3 cut(s)	499, 624, 768
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	4, 512
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	271, 772
TspGWI	ACGGA	2 cut(s)	139, 879
TspRI	CASTG	3 cut(s)	499, 624, 768
Van91I	CCANNNNNTGG	2 cut(s)	426, 695
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	569
XceI	RCATGY	2 cut(s)	250, 280
XcmI	CCANNNNNNNNNTGG	2 cut(s)	525, 728
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.