Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

11954840 .. 11956918

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22756.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATCCCATACGCAACAATCGAAGAAGCGTCGATCGCATTATCTCGAAACCTCACATGGCTAGAGACTCTCTGGTTCGATTACTCCGCCACCAAATCCGATTACTACCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCTCTCGTTCCTCTCCCTCTCGTTTTCATCGAATCATCTCAATCCACCTCAGATTTGTTCAATCGCTACAAAATCCAACCAAAAGTGAAAAACTCATTCTCATCGATGTTCAAATGTTACAAAGACGTCATGAAGATGTTCATCCTCGTCGTTGGTCCATTACAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGAAGTGGATTACCATTACCATCATGTATGGAGATTGTAGCACAGTTAGTGGTTTACTTCTTGGTAGAGGATTATACTAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAGTTTCATCATATTCATCATGAGTATACAGCTCCTATTGGTTATGCTGCTCCTTATGCTCATTGGGCTGAGGTTTTGCTTCTTGGCATTCCCACGTTTCTTGGACCTGCTATTGCTCCTGGTCATATGATTACCTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACTCATAGCGGATATGATTTCCCATGGTCTCTGACAAAGTACATTCCATTTTATGGTGGAGCTGAGTATCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTTTTTACTTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCTTCTTCAGCAGATGAAGGAGAAGTCCAAGAAGAGCAACAAGCTGGTTAATGGAGGAGAGAAATTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

299

Amino Acids

34.99

Weight (kDa)

7.21

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	133 - 267	1.7e-26	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	2 cut(s)	87, 657
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	2 cut(s)	750, 818
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	208, 259
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	4 cut(s)	503, 710, 829, 871
AluI	AGCT	4 cut(s)	503, 710, 829, 871
Alw26I	GTCTC	2 cut(s)	59, 681
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	302, 575
AvaII	GGWCC	2 cut(s)	302, 575
BarI	GAAGNNNNNNTAC	2 cut(s)	748, 780
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	376, 735
BciT130I	CCWGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	59, 681
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	591
Bme18I	GGWCC	2 cut(s)	302, 575
BmgT120I	GGNCC	2 cut(s)	302, 575
BmrFI	CCNGG	1 cut(s)	591
BmrI	ACTGGG	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	251
BsaBI	GATNNNNATC	2 cut(s)	287, 726
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	2 cut(s)	287, 726
BseBI	CCWGG	1 cut(s)	591
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	671
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	2 cut(s)	287, 726
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	3 cut(s)	210, 531, 702
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	897
BseXI	GCAGC	1 cut(s)	505
Bsh1285I	CGRYCG	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	59, 681
BsmI	GAATGC	1 cut(s)	558
Bso31I	GGTCTC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	3, 33
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	2 cut(s)	87, 657
BspCNI	CTCAG	3 cut(s)	209, 532, 703
BspDI	ATCGAT	1 cut(s)	251
BspHI	TCATGA	3 cut(s)	276, 490, 718
BspMI	ACCTGC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	2 cut(s)	3, 33
BssNAI	GTATAC	1 cut(s)	498
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	671
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	134, 140, 854
BstACI	GRCGYC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	196, 540, 711
BstDSI	CCRYGG	1 cut(s)	671
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	6, 36
BstMAI	GTCTC	2 cut(s)	59, 681
BstMBI	GATC	2 cut(s)	3, 33
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 527, 536, 835
BstNI	CCWGG	1 cut(s)	591
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	1 cut(s)	589
BstV1I	GCAGC	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	498
Bsu15I	ATCGAT	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	586
CciI	TCATGA	3 cut(s)	276, 490, 718
Cfr13I	GGNCC	2 cut(s)	302, 575
ClaI	ATCGAT	1 cut(s)	251
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	688
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	6 cut(s)	57, 277, 372, 491, 672, 719
CviJI	RGCY	8 cut(s)	61, 503, 539, 641, 710, 750, 829, 871
CviKI_1	RGCY	8 cut(s)	61, 503, 539, 641, 710, 750, 829, 871
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	3 cut(s)	196, 540, 711
DpnI	GATC	2 cut(s)	5, 35
DpnII	GATC	2 cut(s)	3, 33
Eam1104I	CTCTTC	3 cut(s)	134, 140, 854
EarI	CTCTTC	3 cut(s)	134, 140, 854
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	671
Eco31I	GGTCTC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	302, 575
Eco57I	CTGAAG	2 cut(s)	750, 818
Eco91I	GGTNACC	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	6 cut(s)	60, 280, 375, 494, 675, 722
FatI	CATG	6 cut(s)	56, 276, 371, 490, 671, 718
FauNDI	CATATG	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	519
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	6 cut(s)	60, 280, 375, 494, 675, 722
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	5 cut(s)	67, 179, 331, 444, 816
Hpy166II	GTNNAC	2 cut(s)	403, 498
Hpy188I	TCNGA	4 cut(s)	100, 199, 336, 681
Hpy188III	TCNNGA	5 cut(s)	45, 277, 491, 719, 820
Hpy8I	GTNNAC	2 cut(s)	403, 498
Hpy99I	CGWCG	2 cut(s)	34, 299
HpyAV	CCTTC	2 cut(s)	336, 838
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	3 cut(s)	273, 566, 735
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 527, 536, 835
HpyF3I	CTNAG	3 cut(s)	196, 540, 711
HpySE526I	ACGT	3 cut(s)	273, 566, 735
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	6 cut(s)	60, 280, 375, 494, 675, 722
Kzo9I	GATC	2 cut(s)	3, 33
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	4 cut(s)	508, 526, 592, 707
LpnPI	CCDG	8 cut(s)	58, 418, 576, 591, 603, 764, 833, 857
Lsp1109I	GCAGC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	3 cut(s)	273, 566, 735
MaeIII	GTNAC	3 cut(s)	263, 755, 809
MalI	GATC	2 cut(s)	5, 35
MboI	GATC	2 cut(s)	3, 33
MboII	GAAGA	8 cut(s)	35, 121, 127, 136, 292, 824, 835, 871
MluCI	AATT	2 cut(s)	427, 890
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	247, 718
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	35, 527, 536, 835
NcoI	CCATGG	1 cut(s)	671
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	3, 33
NlaIII	CATG	6 cut(s)	60, 280, 375, 494, 675, 722
PagI	TCATGA	3 cut(s)	276, 490, 718
PciSI	GCTCTTC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 174
PctI	GAATGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	179, 331, 444, 816
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	1 cut(s)	520
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	589
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	589
PspPI	GGNCC	2 cut(s)	302, 575
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	2 cut(s)	3, 33
Sau96I	GGNCC	2 cut(s)	302, 575
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	302, 575
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	427, 890
SsiI	CCGC	2 cut(s)	87, 657
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	3 cut(s)	276, 569, 738
TaqI	TCGA	9 cut(s)	21, 32, 46, 78, 177, 251, 329, 645, 894
TasI	AATT	2 cut(s)	427, 890
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	4 cut(s)	179, 331, 444, 816
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	8 cut(s)	163, 277, 293, 428, 440, 467, 476, 857
Van91I	CCANNNNNTGG	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	302, 575
XapI	RAATTY	1 cut(s)	890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.