Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

11951830 .. 11953731

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22755.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATCCCTTATCCAACCGTAGAAGATGCGTCCGTGGCGTTAGGACGAAACCTTACTTGGTTCGAGACGGTTTGGTTCGATTACTCAGCCACCAAATCCAATTTCCATGTATATTGCCACACCATTCTGGTTCTCTTCCTTGTCTTTTCACTAGCTCCTTTTCCTCTTGTGATTGTCGAATGGACCGGTTGGTTCGATCAGTTTAAGATTCAGAAGAAGGTTAAGTATTCGTTGTCTGATATGTTCCAATGTTATAAAGAAGTCATGAAGTTGTTCCTTCTCGTCGTCGGCACATTGCAAATCGTTTCTTATCCTTCCATCCAGATGGTTGGGATTCGAAGTGGTTTGCCATTACCATCGTTAATGGAGATAGTAGCACAATTAGTGGTTTACTTCTTGATAGAAGATTACACTAACTACTGGATCCATAGATGGATGCATTGCAAATGGGGTTACGAGAAGATTCATCGAATCCATCATGAGTACACATCACCTATCGGATACGCATCGCCGTATGCGCATTGGGCCGAGATTTTGATTCTTGGGATTCCGACGTTTCTTGGACCGGCAATTGCTCCTGGCCATATAATGACGTTTTGGTTATGGATATCTTTACGACAATTCGAGGCGATTGAGACCCACAGCGGATATGATTTTCCATGGAGTGTGACAAAATTAATTCCATTTTACGGTGGACCTGAGTATCATGACTACCATCACTACGTTGGAGGACAAAGCCAGAGCAACTTTGCTTCGGTTTTCACTTACTGCGATTACATTTATGGAACTGATAAAGGCTATCGAATCCATAAGAAGCTTCTTCATCATCAGATTAAAGAGGAAGCTGAAGAGAAGAGAGTAAGGAAACACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

291

Amino Acids

34.28

Weight (kDa)

6.78

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	129 - 263	4.3e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	519
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	2 cut(s)	418, 431
AcoI	YGGCCR	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	689
AgeI	ACCGGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 86, 118
AluBI	AGCT	3 cut(s)	155, 817, 845
AluI	AGCT	3 cut(s)	155, 817, 845
Alw26I	GTCTC	2 cut(s)	59, 629
AlwI	GGATC	2 cut(s)	418, 431
AoxI	GGCC	2 cut(s)	525, 580
AseI	ATTAAT	1 cut(s)	677
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	4 cut(s)	183, 525, 563, 695
AsuHPI	GGTGA	1 cut(s)	483
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	3 cut(s)	183, 563, 695
BaeI	ACNNNNGTAYC	2 cut(s)	686, 719
BalI	TGGCCA	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	423
BccI	CCATC	6 cut(s)	319, 326, 364, 426, 483, 723
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	59, 629
BfaI	CTAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	3 cut(s)	183, 563, 695
BmgT120I	GGNCC	4 cut(s)	183, 525, 563, 695
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	16, 426, 515
Bpu14I	TTCGAA	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	505
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	33, 659
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse118I	RCCGGY	2 cut(s)	185, 565
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	293, 439
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	33, 659
BseGI	GGATG	2 cut(s)	318, 441
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	2 cut(s)	293, 439
BseMII	CTCAG	2 cut(s)	99, 690
BseNI	ACTGG	1 cut(s)	425
BshFI	GGCC	2 cut(s)	527, 582
BshTI	ACCGGT	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	186, 566
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	2 cut(s)	59, 629
BsmBI	CGTCTC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	527, 582
Bso31I	GGTCTC	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	3, 196, 423
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	2 cut(s)	527, 582
BspCNI	CTCAG	2 cut(s)	98, 691
BspHI	TCATGA	3 cut(s)	264, 478, 706
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	418, 431
BspT104I	TTCGAA	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	293, 439
BsrFI	RCCGGY	2 cut(s)	185, 565
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	2 cut(s)	185, 565
BssECI	CCNNGG	2 cut(s)	33, 659
BssMI	GATC	3 cut(s)	3, 196, 423
BssT1I	CCWWGG	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	19, 70, 692
Bst6I	CTCTTC	3 cut(s)	140, 843, 848
BstBI	TTCGAA	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	85, 699
BstDSI	CCRYGG	2 cut(s)	33, 659
BstF5I	GGATG	2 cut(s)	318, 441
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	3 cut(s)	6, 199, 426
BstMAI	GTCTC	2 cut(s)	59, 629
BstMBI	GATC	3 cut(s)	3, 196, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 517, 524
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	2 cut(s)	325, 329
BstYI	RGATCY	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	527, 582
BtgI	CCRYGG	2 cut(s)	33, 659
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	318, 441
CciI	TCATGA	3 cut(s)	264, 478, 706
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	2 cut(s)	185, 565
Cfr13I	GGNCC	4 cut(s)	183, 525, 563, 695
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	5 cut(s)	107, 265, 479, 660, 707
CviJI	RGCY	8 cut(s)	89, 155, 527, 582, 738, 798, 817, 845
CviKI_1	RGCY	8 cut(s)	89, 155, 527, 582, 738, 798, 817, 845
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	85, 699
DpnI	GATC	3 cut(s)	5, 198, 425
DpnII	GATC	3 cut(s)	3, 196, 423
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	3 cut(s)	140, 843, 848
EarI	CTCTTC	3 cut(s)	140, 843, 848
Eco130I	CCWWGG	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	183, 563, 695
Eco57I	CTGAAG	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	659
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	659
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	110, 268, 482, 663, 710
FatI	CATG	5 cut(s)	106, 264, 478, 659, 706
FokI	GGATG	2 cut(s)	305, 448
FspAI	RTGCGCAY	1 cut(s)	519
FspBI	CTAG	1 cut(s)	152
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	527, 582
HapII	CCGG	2 cut(s)	186, 566
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	5 cut(s)	110, 268, 482, 663, 710
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	7 cut(s)	208, 334, 463, 471, 538, 547, 804
HpaII	CCGG	2 cut(s)	186, 566
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	3 cut(s)	391, 486, 695
Hpy188I	TCNGA	5 cut(s)	213, 238, 500, 552, 831
Hpy188III	TCNNGA	6 cut(s)	64, 265, 322, 397, 479, 707
Hpy8I	GTNNAC	3 cut(s)	391, 486, 695
Hpy99I	CGWCG	3 cut(s)	287, 290, 556
HpyAV	CCTTC	3 cut(s)	211, 287, 324
HpyCH4III	ACNGT	3 cut(s)	19, 70, 692
HpyCH4IV	ACGT	3 cut(s)	554, 593, 723
HpyCH4V	TGCA	3 cut(s)	298, 439, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 517, 524
HpyF3I	CTNAG	2 cut(s)	85, 699
HpySE526I	ACGT	3 cut(s)	554, 593, 723
Hsp92II	CATG	5 cut(s)	110, 268, 482, 663, 710
HspAI	GCGC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	3, 196, 423
LmnI	GCTCC	2 cut(s)	160, 580
LpnPI	CCDG	9 cut(s)	113, 199, 335, 406, 564, 579, 591, 711, 752
LweI	GCATC	3 cut(s)	16, 426, 515
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	554, 593, 723
MaeIII	GTNAC	2 cut(s)	452, 667
MalI	GATC	3 cut(s)	5, 198, 425
MboI	GATC	3 cut(s)	3, 196, 423
MboII	GAAGA	8 cut(s)	35, 127, 226, 416, 472, 812, 860, 865
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	6 cut(s)	100, 380, 570, 620, 674, 678
MluNI	TGGCCA	1 cut(s)	582
MmeI	TCCRAC	3 cut(s)	38, 575, 706
MnlI	CCTC	4 cut(s)	174, 619, 722, 832
Mox20I	TGGCCA	1 cut(s)	582
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	5 cut(s)	204, 222, 362, 677, 834
MslI	CAYNNNNRTG	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	645
MspI	CCGG	2 cut(s)	186, 566
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	35, 517, 524
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	3 cut(s)	3, 196, 423
NlaIII	CATG	5 cut(s)	110, 268, 482, 663, 710
NlaIV	GGNNCC	1 cut(s)	425
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	667
NsbI	TGCGCA	1 cut(s)	519
NsiI	ATGCAT	1 cut(s)	441
NspV	TTCGAA	1 cut(s)	337
PagI	TCATGA	3 cut(s)	264, 478, 706
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	7 cut(s)	208, 334, 463, 471, 538, 547, 804
PinAI	ACCGGT	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	4 cut(s)	183, 525, 563, 695
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	5 cut(s)	204, 222, 362, 677, 834
Sau3AI	GATC	3 cut(s)	3, 196, 423
Sau96I	GGNCC	4 cut(s)	183, 525, 563, 695
ScrFI	CCNGG	1 cut(s)	579
SfaNI	GCATC	3 cut(s)	16, 426, 515
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	3 cut(s)	183, 563, 695
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	6 cut(s)	100, 380, 570, 620, 674, 678
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	19, 70, 692
TaiI	ACGT	3 cut(s)	557, 596, 726
TaqI	TCGA	8 cut(s)	63, 78, 177, 195, 337, 469, 624, 802
TasI	AATT	6 cut(s)	100, 380, 570, 620, 674, 678
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	7 cut(s)	208, 334, 463, 471, 538, 547, 804
Tru1I	TTAA	5 cut(s)	204, 222, 362, 677, 834
Tru9I	TTAA	5 cut(s)	204, 222, 362, 677, 834
TseFI	GTSAC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	3 cut(s)	281, 455, 812
TspGWI	ACGGA	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	183, 563, 695
VspI	ATTAAT	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.