Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Forward (+)

7323131 .. 7326066

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTGCCCTACCAGACCATCGAGGAGGCCTCGGCGGCTTTGGGCCGAAACCTCACCTTCGCCGAGACACTGTGGTTCAACTACTCTGCGTCCAAGTCCGATTATGTCCTCTACTGCCACAACATTCTCTTCCTCTTCGCCATCTTCTCCCTCGTCCCTCTCCCTCTGGTTTTCATGGAGGTTCTCAGATGGGGCGGCCTCGACCGCTACAAGATCCAGCCCAAAGTCCGATTGCCCTTCTCTGACATGTTGAAATGCTACAAGGACGTTATGTGGATGTTCTTTTTCATCGTTGGCCCTCTCCAGCTCGTCTCTTACCCTTCAGTCCAGATGATCGGGATTCGAACAGGATTGCCATTGCCGTCTGGATGGGAGATGCTTTCCCAGTTGTTAGTTTATTTCTTGGTAGAAGATTATACCAACTACTGGATCCACAGATTTTTGCATAACAAATGGGGGTACGAGAAAATCCATCGAGTTCACCATGAGTACACTGCTCCAATTGGATTTGCAGCGCCATATGCGCATTGGGCTGAGATTTTGATCCTCGGCATCCCATCTTTTCTTGGTCCGGCCATGGTTCCTGGCCACATGGTCACATTCTGGTCGTGGATAGCATTGCGGCAGTTTGAGGCCATAGAAACACACAGCGGTTATGACTTCCCCTGGACTCCCACAAAGCATATCCCATTTTATGGCGGTGCTGAGTATCATGATTACCATCATTATGTTGGAGGACAAAGCCAGAGTAATTTTGCTTCAGTGTTCACCTATTGTGATTACATTTATGGAACAGACAAGATCGGTACCAGAAGAACGATCCTTAAGAAGTTGAACGAGGAACCTGCTGGTGTCCAAAATGGAGGCTCCATAGATTTTAAAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

297

Amino Acids

34.35

Weight (kDa)

6.49

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	853
Acc65I	GGTACC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	806
AccB7I	CCANNNNNTGG	2 cut(s)	426, 695
AciI	CCGC	6 cut(s)	35, 195, 205, 622, 651, 699
AclWI	GGATC	5 cut(s)	208, 424, 437, 538, 814
AcoI	YGGCCR	2 cut(s)	573, 586
AcuI	CTGAAG	2 cut(s)	306, 744
AfaI	GTAC	3 cut(s)	461, 491, 808
AfiI	CCNNNNNNNGG	2 cut(s)	426, 695
AflII	CTTAAG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	79, 253, 835
AjnI	CCWGG	2 cut(s)	583, 665
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw26I	GTCTC	2 cut(s)	59, 316
AlwI	GGATC	5 cut(s)	208, 424, 437, 538, 814
AoxI	GGCC	7 cut(s)	27, 43, 196, 295, 573, 586, 633
ApeKI	GCWGC	2 cut(s)	4, 512
Asp718I	GGTACC	1 cut(s)	806
AspLEI	GCGC	2 cut(s)	517, 526
AspS9I	GGNCC	3 cut(s)	43, 296, 569
AsuHPI	GGTGA	3 cut(s)	46, 473, 760
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	806
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	7 cut(s)	26, 149, 183, 363, 480, 565, 729
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	585, 667
BcoDI	GTCTC	2 cut(s)	59, 316
BfoI	RGCGCY	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	824
BfuAI	ACCTGC	1 cut(s)	853
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	5 cut(s)	5, 36, 196, 513, 623
BlsI	GCNGC	5 cut(s)	6, 37, 197, 514, 624
Bme1390I	CCNGG	2 cut(s)	585, 667
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	43, 296, 569
BmiI	GGNNCC	5 cut(s)	431, 582, 808, 843, 868
BmrFI	CCNGG	2 cut(s)	585, 667
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	366, 561
BmuI	ACTGGG	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	343
BsaBI	GATNNNNATC	2 cut(s)	542, 720
BsaJI	CCNNGG	4 cut(s)	30, 547, 576, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 695
Bse1I	ACTGG	2 cut(s)	385, 431
Bse3DI	GCAATG	2 cut(s)	356, 617
Bse8I	GATNNNNATC	2 cut(s)	542, 720
BseBI	CCWGG	2 cut(s)	585, 667
BseDI	CCNNGG	4 cut(s)	30, 547, 576, 665
BseGI	GGATG	3 cut(s)	282, 374, 552
BseJI	GATNNNNATC	2 cut(s)	542, 720
BseLI	CCNNNNNNNGG	2 cut(s)	426, 695
BseMI	GCAATG	2 cut(s)	356, 617
BseMII	CTCAG	3 cut(s)	199, 525, 696
BseNI	ACTGG	2 cut(s)	385, 431
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	7 cut(s)	29, 45, 198, 297, 575, 588, 635
BshNI	GGYRCC	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	426, 695
BsmAI	GTCTC	2 cut(s)	59, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	7 cut(s)	29, 45, 198, 297, 575, 588, 635
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	6 cut(s)	35, 195, 205, 622, 651, 699
BspANI	GGCC	7 cut(s)	29, 45, 198, 297, 575, 588, 635
BspCNI	CTCAG	3 cut(s)	198, 526, 697
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	5 cut(s)	431, 582, 808, 843, 868
BspMI	ACCTGC	1 cut(s)	853
BspPI	GGATC	5 cut(s)	208, 424, 437, 538, 814
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	806
BspTI	CTTAAG	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	356, 617
BsrI	ACTGG	2 cut(s)	385, 431
BssECI	CCNNGG	4 cut(s)	30, 547, 576, 665
BssMI	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	585, 667
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	134, 140
BstAFI	CTTAAG	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	185, 534, 705
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	282, 374, 552
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	517, 526
BstKTI	GATC	6 cut(s)	216, 336, 432, 546, 804, 822
BstMAI	GTCTC	2 cut(s)	59, 316
BstMBI	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 204, 521, 523, 530
BstNI	CCWGG	2 cut(s)	585, 667
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	583, 665
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	213, 429
BstYI	RGATCY	2 cut(s)	213, 429
BsuRI	GGCC	7 cut(s)	29, 45, 198, 297, 575, 588, 635
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	282, 374, 552
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	68, 492, 768
BveI	ACCTGC	1 cut(s)	853
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	2 cut(s)	517, 526
Cfr13I	GGNCC	3 cut(s)	43, 296, 569
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	460, 490, 807
CviAII	CATG	6 cut(s)	175, 247, 485, 577, 592, 713
CviQI	GTAC	3 cut(s)	460, 490, 807
DdeI	CTNAG	3 cut(s)	185, 534, 705
DpnI	GATC	6 cut(s)	215, 335, 431, 545, 803, 821
DpnII	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
DraI	TTTAAA	1 cut(s)	880
EaeI	YGGCCR	2 cut(s)	573, 586
Eam1104I	CTCTTC	2 cut(s)	134, 140
EarI	CTCTTC	2 cut(s)	134, 140
Eco130I	CCWWGG	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	306, 744
EcoRII	CCWGG	2 cut(s)	583, 665
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	6 cut(s)	178, 250, 488, 580, 595, 716
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	174, 246, 484, 576, 591, 712
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	5 cut(s)	5, 36, 196, 513, 623
FokI	GGATG	3 cut(s)	289, 381, 539
Fsp4HI	GCNGC	5 cut(s)	5, 36, 196, 513, 623
FspAI	RTGCGCAY	1 cut(s)	525
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	2 cut(s)	516, 525
GluI	GCNGC	5 cut(s)	5, 36, 196, 513, 623
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	7 cut(s)	29, 45, 198, 297, 575, 588, 635
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	517, 526
Hin1II	CATG	6 cut(s)	178, 250, 488, 580, 595, 716
Hin6I	GCGC	2 cut(s)	515, 524
HinP1I	GCGC	2 cut(s)	515, 524
HinfI	GANTC	2 cut(s)	340, 670
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	3 cut(s)	46, 473, 760
Hpy166II	GTNNAC	3 cut(s)	481, 492, 768
Hpy188I	TCNGA	4 cut(s)	100, 188, 230, 244
Hpy188III	TCNNGA	4 cut(s)	328, 337, 366, 713
Hpy8I	GTNNAC	3 cut(s)	481, 492, 768
HpyAV	CCTTC	3 cut(s)	67, 247, 330
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	445, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 204, 521, 523, 530
HpyF3I	CTNAG	3 cut(s)	185, 534, 705
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	178, 250, 488, 580, 595, 716
HspAI	GCGC	2 cut(s)	515, 524
KpnI	GGTACC	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
LmnI	GCTCC	2 cut(s)	502, 872
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	2 cut(s)	366, 561
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	6 cut(s)	215, 335, 431, 545, 803, 821
MboI	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
MboII	GAAGA	5 cut(s)	121, 127, 136, 422, 825
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	2 cut(s)	213, 429
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	2 cut(s)	501, 751
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	712
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	2 cut(s)	825, 879
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	585, 667
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	585, 667
MwoI	GCNNNNNNNGC	5 cut(s)	35, 204, 521, 523, 530
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
NlaIII	CATG	6 cut(s)	178, 250, 488, 580, 595, 716
NlaIV	GGNNCC	5 cut(s)	431, 582, 808, 843, 868
NmeAIII	GCCGAG	3 cut(s)	11, 88, 528
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	525
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	343
PagI	TCATGA	1 cut(s)	712
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	340
PflMI	CCANNNNNTGG	2 cut(s)	426, 695
PkrI	GCNGC	5 cut(s)	6, 37, 197, 514, 624
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PscI	ACATGT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	583, 665
PspGI	CCWGG	2 cut(s)	583, 665
PspN4I	GGNNCC	5 cut(s)	431, 582, 808, 843, 868
PspPI	GGNCC	3 cut(s)	43, 296, 569
PsuI	RGATCY	2 cut(s)	213, 429
RsaI	GTAC	3 cut(s)	461, 491, 808
RsaNI	GTAC	3 cut(s)	460, 490, 807
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	2 cut(s)	825, 879
SatI	GCNGC	5 cut(s)	5, 36, 196, 513, 623
Sau3AI	GATC	6 cut(s)	213, 333, 429, 543, 801, 819
Sau96I	GGNCC	3 cut(s)	43, 296, 569
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	585, 667
SetI	ASST	7 cut(s)	54, 59, 183, 270, 309, 773, 847
SfaNI	GCATC	2 cut(s)	366, 561
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	2 cut(s)	501, 751
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	6 cut(s)	35, 195, 205, 622, 651, 699
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	583, 665
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	21, 201, 343, 475
TasI	AATT	2 cut(s)	501, 751
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	3 cut(s)	38, 198, 625
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	825, 879
Tru9I	TTAA	2 cut(s)	825, 879
TscAI	CASTG	3 cut(s)	75, 499, 768
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	4, 512
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	163, 277
TspRI	CASTG	3 cut(s)	75, 499, 768
Van91I	CCANNNNNTGG	2 cut(s)	426, 695
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	569
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	2 cut(s)	525, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.