FvH4_5g00810

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
460643 .. 464234
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00810.t1

Sequence Viewer

Length: 909 bp
ATGCTGCCGTACCAGACCATCTCCGAGGCGGCCTCCGCCCTCGGCCGGAACCTCACTTTCGGCGAGACCCTTTGGTTCAACTACTCGGCCTCCAAGTCCGATTACTTCCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCCCTCGTCCCTATCCCCCTCGTCTTCGTCGAGGTCCTCCGATGGGCCGGCTTCGATCGCTACAAGATCCAGCCCAAGGTCCGATTGACCTTCTCCGACATGGTCAAGTGCTACAAGGACGTCATGTGGATGTTCTTCTCCGTCGTCGGCCCCCTCCAGCTCGTCTCCTACCCTTCCATCCAGCTTATAGGGATCCGAACAGGATTGCCATTGCCATCAGGGTGGGAGATGGTTTCCCAATTGTTGGTTTACTTCTTGGTGGAGGATTACACCAACTATTGGATCCACAGGTTTCTGCATAACAAATGGGGGTATGACAAGATCCATCGAGTTCATCATGAGTACACTGCTCCCATTGGTTATGCGGCGCCATATGCACACTGGGCGGAGATTTTGATTCTCGGCATCCCATCTTTCCTCGGGCCAGCTATAGCGCCTGGCCACATGATCACATTCTGGTCGTGGATAGCATTGAGGCAGGTTGAGGCCATTGAAACACACAGCGGGTACGACTTCCCCTGGACTCCCACAAAATATATTCCATTTTATGGTGGTGCTGAGTATCATGATTACCATCACTATGTTGGAGGACTTAGCCAGAGCAATTTTGCTTCAGTTTTTACTTACTGCGATTACATTTATGGGACTGACAAGGGATATCGATACCAGAAGAAGATCCTTAAAAAGTTGAAAGAGGAGACTAACGGTGTGCAAAATGGAGGGTCGTACAACACCTCAACTGTAGACCTTAAAACTGATTAG

Protein Analysis

303

Amino Acids

35.05

Weight (kDa)

7.2

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 131 - 265 2e-26 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 514
AccB7I CCANNNNNTGG 3 cut(s) 391, 426, 695
AccI GTMKAC 1 cut(s) 891
AciI CCGC 5 cut(s) 29, 36, 512, 533, 651
AclWI GGATC 7 cut(s) 208, 334, 347, 424, 437, 463, 817
AcoI YGGCCR 2 cut(s) 43, 586
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 2 cut(s) 267, 515
AfaI GTAC 4 cut(s) 11, 491, 656, 875
AfiI CCNNNNNNNGG 6 cut(s) 45, 190, 223, 391, 426, 695
AgsI TTSAA 3 cut(s) 79, 641, 838
AjnI CCWGG 2 cut(s) 583, 665
AluBI AGCT 3 cut(s) 307, 331, 575
AluI AGCT 3 cut(s) 307, 331, 575
Alw26I GTCTC 3 cut(s) 59, 316, 839
AlwI GGATC 7 cut(s) 208, 334, 347, 424, 437, 463, 817
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 8 cut(s) 30, 43, 87, 192, 295, 569, 586, 633
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 517, 583
AspS9I GGNCC 5 cut(s) 181, 192, 226, 296, 569
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 2 cut(s) 181, 226
BalI TGGCCA 1 cut(s) 588
BamHI GGATCC 2 cut(s) 339, 429
BanI GGYRCC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 8 cut(s) 26, 183, 332, 370, 370, 480, 565, 729
BciT130I CCWGG 2 cut(s) 585, 667
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 3 cut(s) 59, 316, 839
BfmI CTRYAG 2 cut(s) 576, 888
BfoI RGCGCY 2 cut(s) 518, 584
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 3 cut(s) 5, 30, 513
BlsI GCNGC 3 cut(s) 6, 31, 514
Bme1390I CCNGG 2 cut(s) 585, 667
Bme18I GGWCC 2 cut(s) 181, 226
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 5 cut(s) 181, 192, 226, 296, 569
BmiI GGNNCC 5 cut(s) 50, 298, 341, 431, 516
BmrFI CCNGG 2 cut(s) 585, 667
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 808
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 2 cut(s) 267, 515
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 5 cut(s) 24, 40, 222, 565, 665
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 190, 223, 391, 426, 695
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 2 cut(s) 585, 667
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 5 cut(s) 24, 40, 222, 565, 665
BseGI GGATG 3 cut(s) 282, 324, 552
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 6 cut(s) 45, 190, 223, 391, 426, 695
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 857
BseX3I CGGCCG 1 cut(s) 43
Bsh1285I CGRYCG 2 cut(s) 46, 205
BshFI GGCC 8 cut(s) 32, 45, 89, 194, 297, 571, 588, 635
BshNI GGYRCC 1 cut(s) 514
BshVI ATCGAT 1 cut(s) 808
BsiEI CGRYCG 2 cut(s) 46, 205
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 2 cut(s) 46, 195
BslFI GGGAC 2 cut(s) 140, 805
BslI CCNNNNNNNGG 6 cut(s) 45, 190, 223, 391, 426, 695
BsmAI GTCTC 3 cut(s) 59, 316, 839
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 2 cut(s) 140, 805
BsnI GGCC 8 cut(s) 32, 45, 89, 194, 297, 571, 588, 635
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 566
Bsp143I GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
BspACI CCGC 5 cut(s) 29, 36, 512, 533, 651
BspANI GGCC 8 cut(s) 32, 45, 89, 194, 297, 571, 588, 635
BspCNI CTCAG 1 cut(s) 697
BspDI ATCGAT 1 cut(s) 808
BspHI TCATGA 2 cut(s) 484, 712
BspLI GGNNCC 5 cut(s) 50, 298, 341, 431, 516
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 7 cut(s) 208, 334, 347, 424, 437, 463, 817
BspT107I GGYRCC 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 533
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 5 cut(s) 24, 40, 222, 565, 665
BssMI GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
BssNI GRCGYC 2 cut(s) 267, 515
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 585, 667
Bst4CI ACNGT 2 cut(s) 854, 889
Bst6I CTCTTC 2 cut(s) 134, 140
BstACI GRCGYC 2 cut(s) 267, 515
BstC8I GCNNGC 2 cut(s) 196, 573
BstDEI CTNAG 2 cut(s) 705, 740
BstF5I GGATG 3 cut(s) 282, 324, 552
BstH2I RGCGCY 2 cut(s) 518, 584
BstHHI GCGC 2 cut(s) 517, 583
BstKTI GATC 7 cut(s) 205, 216, 342, 432, 471, 597, 825
BstMAI GTCTC 3 cut(s) 59, 316, 839
BstMBI GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
BstMCI CGRYCG 2 cut(s) 46, 205
BstMWI GCNNNNNNNGC 4 cut(s) 35, 204, 521, 530
BstNI CCWGG 2 cut(s) 585, 667
BstSCI CCNGG 2 cut(s) 583, 665
BstSFI CTRYAG 2 cut(s) 576, 888
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 5 cut(s) 213, 339, 429, 468, 822
BstXI CCANNNNNNTGG 1 cut(s) 369
BstYI RGATCY 5 cut(s) 213, 339, 429, 468, 822
BstZI CGGCCG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 808
BsuRI GGCC 8 cut(s) 32, 45, 89, 194, 297, 571, 588, 635
BsuTUI ATCGAT 1 cut(s) 808
BtsCI GGATG 3 cut(s) 282, 324, 552
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 492, 526
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 196, 573
CciI TCATGA 2 cut(s) 484, 712
CfoI GCGC 2 cut(s) 517, 583
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 5 cut(s) 181, 192, 226, 296, 569
ClaI ATCGAT 1 cut(s) 808
Csp6I GTAC 4 cut(s) 10, 490, 655, 874
CviAII CATG 5 cut(s) 247, 271, 485, 592, 713
CviQI GTAC 4 cut(s) 10, 490, 655, 874
DdeI CTNAG 2 cut(s) 705, 740
DinI GGCGCC 1 cut(s) 516
DpnI GATC 7 cut(s) 204, 215, 341, 431, 470, 596, 824
DpnII GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
EaeI YGGCCR 2 cut(s) 43, 586
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 134, 140
EarI CTCTTC 2 cut(s) 134, 140
EciI GGCGGA 2 cut(s) 25, 548
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 806
Eco47I GGWCC 2 cut(s) 181, 226
Eco52I CGGCCG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 583, 665
EcoRV GATATC 1 cut(s) 806
EcoT14I CCWWGG 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 516
EheI GGCGCC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 5 cut(s) 250, 274, 488, 595, 716
FaqI GGGAC 2 cut(s) 140, 805
FatI CATG 5 cut(s) 246, 270, 484, 591, 712
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 3 cut(s) 5, 30, 513
FokI GGATG 3 cut(s) 289, 311, 539
Fsp4HI GCNGC 3 cut(s) 5, 30, 513
GlaI GCGC 2 cut(s) 516, 582
GluI GCNGC 3 cut(s) 5, 30, 513
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 2 cut(s) 518, 584
HaeIII GGCC 8 cut(s) 32, 45, 89, 194, 297, 571, 588, 635
HapII CCGG 2 cut(s) 46, 195
HhaI GCGC 2 cut(s) 517, 583
Hin1I GRCGYC 2 cut(s) 267, 515
Hin1II CATG 5 cut(s) 250, 274, 488, 595, 716
Hin6I GCGC 2 cut(s) 515, 581
HinP1I GCGC 2 cut(s) 515, 581
HinfI GANTC 2 cut(s) 544, 670
HpaII CCGG 2 cut(s) 46, 195
Hpy166II GTNNAC 3 cut(s) 397, 492, 892
Hpy188I TCNGA 6 cut(s) 25, 100, 188, 230, 244, 344
Hpy188III TCNNGA 2 cut(s) 485, 713
Hpy8I GTNNAC 3 cut(s) 397, 492, 892
Hpy99I CGWCG 3 cut(s) 179, 293, 296
HpyAV CCTTC 2 cut(s) 247, 330
HpyCH4III ACNGT 2 cut(s) 854, 889
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 445, 524, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 204, 521, 530
HpyF3I CTNAG 2 cut(s) 705, 740
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 267, 515
Hsp92II CATG 5 cut(s) 250, 274, 488, 595, 716
HspAI GCGC 2 cut(s) 515, 581
KasI GGCGCC 1 cut(s) 514
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
LmnI GCTCC 1 cut(s) 502
LweI GCATC 1 cut(s) 561
MaeII ACGT 1 cut(s) 267
MalI GATC 7 cut(s) 204, 215, 341, 431, 470, 596, 824
MboI GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
MboII GAAGA 7 cut(s) 121, 127, 136, 163, 274, 829, 832
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 5 cut(s) 213, 339, 429, 468, 822
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 2 cut(s) 386, 751
MluNI TGGCCA 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 515
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 2 cut(s) 267, 712
Mox20I TGGCCA 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 194
MscI TGGCCA 1 cut(s) 588
MseI TTAA 2 cut(s) 828, 897
MslI CAYNNNNRTG 3 cut(s) 275, 367, 726
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 2 cut(s) 46, 195
MspR9I CCNGG 2 cut(s) 585, 667
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 2 cut(s) 585, 667
MwoI GCNNNNNNNGC 4 cut(s) 35, 204, 521, 530
NaeI GCCGGC 1 cut(s) 196
NarI GGCGCC 1 cut(s) 515
NdeI CATATG 1 cut(s) 520
NdeII GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 5 cut(s) 250, 274, 488, 595, 716
NlaIV GGNNCC 5 cut(s) 50, 298, 341, 431, 516
NmeAIII GCCGAG 3 cut(s) 21, 65, 528
PagI TCATGA 2 cut(s) 484, 712
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 544
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 3 cut(s) 391, 426, 695
PkrI GCNGC 3 cut(s) 6, 31, 514
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 664
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 583, 665
PspGI CCWGG 2 cut(s) 583, 665
PspN4I GGNNCC 5 cut(s) 50, 298, 341, 431, 516
PspPI GGNCC 5 cut(s) 181, 192, 226, 296, 569
PspPPI RGGWCCY 1 cut(s) 181
PsuI RGATCY 5 cut(s) 213, 339, 429, 468, 822
PsyI GACNNNGTC 1 cut(s) 248
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 4 cut(s) 11, 491, 656, 875
RsaNI GTAC 4 cut(s) 10, 490, 655, 874
RseI CAYNNNNRTG 3 cut(s) 275, 367, 726
SaqAI TTAA 2 cut(s) 828, 897
SatI GCNGC 3 cut(s) 5, 30, 513
Sau3AI GATC 7 cut(s) 202, 213, 339, 429, 468, 594, 822
Sau96I GGNCC 5 cut(s) 181, 192, 226, 296, 569
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 585, 667
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 2 cut(s) 576, 888
SfoI GGCGCC 1 cut(s) 516
SinI GGWCC 2 cut(s) 181, 226
SmiMI CAYNNNNRTG 3 cut(s) 275, 367, 726
Sse9I AATT 2 cut(s) 386, 751
SsiI CCGC 5 cut(s) 29, 36, 512, 533, 651
SspDI GGCGCC 1 cut(s) 514
StyD4I CCNGG 2 cut(s) 583, 665
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 854, 889
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 177, 201, 475, 808
TasI AATT 2 cut(s) 386, 751
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 32, 515
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 2 cut(s) 828, 897
Tru9I TTAA 2 cut(s) 828, 897
TscAI CASTG 2 cut(s) 499, 533
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 2 cut(s) 499, 533
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 3 cut(s) 391, 426, 695
VpaK11BI GGWCC 2 cut(s) 181, 226
XcmI CCANNNNNNNNNTGG 2 cut(s) 525, 728
XmiI GTMKAC 1 cut(s) 891
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.