Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

45602652 .. 45604526

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG211300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTGCCTTACCAAAACCTTCAAGAAGCAGAAGAAGCCCATGGCAGAGCTCTCAGTGTGGCAGAGAAGCTATGGTTCCGATACTCGGCTCACAAACCAGATTACGTCCTTCACTACCATAACATCATCTTCCTCATGCTGTTCTACACTTTGGCTCCTCTGCCGTACGTGTTCATAGGACTCGGCTGGTTCAAGAACATGGACAAGTACAAGATTCAACCGAAGGTGAAGGACTCCTTCTCTAACATGTTCAAGTGCTATAAGAATGTCATGGAAAGCTTTCTTCTTGTTGTTGGCCCTCTGCAAGTGATTTCATACCCCACGATCCAGTGGATAGGGATTCGGACGAGTTTGCCATTACCATCCTTGTGGGAAGTATTTTTGCAAATAATGGTGTATTTTATTATAGAGGATTTCGGAAATTATTGGATCCATCGACTACTCCACTCAAAATGGGGCTACAACAAGATCCACCGGATCCACCATGAATACGCTGCTCCGATTGGGCTTGCAGCACCATATGCCCATTGGGCGGAAATTTTGATCCTCGGCATTCCTGCATTTCTCGCCCCAGCATTGGTTCCCGGCCACATTGTCACATACTGGTTATGGTTCATTTTGCGACAAATGGAAGCCATTGAGACTCATAGCGGGTACAACTTCCCTTGGAGTCCCTCAAAATACATCCCATTCTATGGAGGTGCAGAGTACCACGACTATCATCACTATGTTGGAGAACAAAGTCAGAGCAACTTTGCATCAGTGTTCACTTATTGCGATTACATCTATGGAACTGACAAGGGGTATAGGTATCGGAAGCAAGCCCTTGAGAAGGTAAGTACCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

282

Amino Acids

33.27

Weight (kDa)

8.29

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	131 - 265	4.8e-29	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	695
AciI	CCGC	2 cut(s)	533, 651
AclWI	GGATC	7 cut(s)	319, 424, 437, 463, 472, 485, 538
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	5 cut(s)	167, 209, 656, 710, 841
AfiI	CCNNNNNNNGG	5 cut(s)	85, 532, 577, 695, 832
AflIII	ACRYGT	2 cut(s)	168, 246
AgsI	TTSAA	4 cut(s)	23, 193, 218, 253
AluBI	AGCT	3 cut(s)	50, 70, 279
AluI	AGCT	3 cut(s)	50, 70, 279
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	7 cut(s)	319, 424, 437, 463, 472, 485, 538
AoxI	GGCC	2 cut(s)	295, 586
ApeKI	GCWGC	3 cut(s)	4, 494, 512
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	1 cut(s)	238
BamHI	GGATCC	2 cut(s)	429, 477
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	481, 524
BccI	CCATC	2 cut(s)	370, 441
BceAI	ACGGC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	635
BglI	GCCNNNNNGGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	5, 495, 513
BlsI	GCNGC	3 cut(s)	6, 496, 514
Bme1390I	CCNGG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	5 cut(s)	77, 156, 431, 479, 582
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	585
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	40, 547, 665
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 532, 577, 695, 832
Bse1I	ACTGG	2 cut(s)	328, 608
BseDI	CCNNGG	3 cut(s)	40, 547, 665
BseGI	GGATG	2 cut(s)	362, 684
BseLI	CCNNNNNNNGG	5 cut(s)	85, 532, 577, 695, 832
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	328, 608
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	481, 524
BseYI	CCCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	2 cut(s)	297, 588
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	475, 585
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	5 cut(s)	85, 532, 577, 695, 832
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	297, 588
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	5 cut(s)	324, 429, 468, 477, 543
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	2 cut(s)	533, 651
BspANI	GGCC	2 cut(s)	297, 588
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	5 cut(s)	77, 156, 431, 479, 582
BspPI	GGATC	7 cut(s)	319, 424, 437, 463, 472, 485, 538
BsrI	ACTGG	2 cut(s)	328, 608
BssECI	CCNNGG	3 cut(s)	40, 547, 665
BssMI	GATC	5 cut(s)	324, 429, 468, 477, 543
BssT1I	CCWWGG	2 cut(s)	40, 665
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	510, 822
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	362, 684
BstKTI	GATC	5 cut(s)	327, 432, 471, 480, 546
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	324, 429, 468, 477, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 521, 530, 566
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	481, 524
BstX2I	RGATCY	3 cut(s)	429, 468, 477
BstXI	CCANNNNNNTGG	1 cut(s)	369
BstYI	RGATCY	3 cut(s)	429, 468, 477
BsuRI	GGCC	2 cut(s)	297, 588
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	362, 684
BtsIMutI	CAGTG	3 cut(s)	61, 335, 768
Cac8I	GCNNGC	2 cut(s)	510, 822
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	5 cut(s)	166, 208, 655, 709, 840
CviAII	CATG	6 cut(s)	41, 136, 199, 247, 271, 485
CviQI	GTAC	5 cut(s)	166, 208, 655, 709, 840
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	5 cut(s)	326, 431, 470, 479, 545
DpnII	GATC	5 cut(s)	324, 429, 468, 477, 543
EaeI	YGGCCR	1 cut(s)	586
EciI	GGCGGA	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	40, 665
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoT14I	CCWWGG	2 cut(s)	40, 665
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	40, 665
FaeI	CATG	6 cut(s)	44, 139, 202, 250, 274, 488
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	6 cut(s)	40, 135, 198, 246, 270, 484
FauI	CCCGC	1 cut(s)	644
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	5, 495, 513
FokI	GGATG	2 cut(s)	349, 671
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	5, 495, 513
GluI	GCNGC	3 cut(s)	5, 495, 513
GsaI	CCCAGC	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	297, 588
HapII	CCGG	2 cut(s)	475, 585
Hin1II	CATG	6 cut(s)	44, 139, 202, 250, 274, 488
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	6 cut(s)	180, 214, 233, 340, 643, 670
HpaII	CCGG	2 cut(s)	475, 585
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	6 cut(s)	80, 345, 419, 501, 747, 816
Hpy188III	TCNNGA	2 cut(s)	23, 193
Hpy8I	GTNNAC	1 cut(s)	768
HpyAV	CCTTC	6 cut(s)	29, 119, 217, 223, 247, 826
HpyCH4IV	ACGT	2 cut(s)	105, 168
HpyCH4V	TGCA	6 cut(s)	304, 385, 512, 560, 704, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 521, 530, 566
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	105, 168
Hsp92II	CATG	6 cut(s)	44, 139, 202, 250, 274, 488
Kzo9I	GATC	5 cut(s)	324, 429, 468, 477, 543
LmnI	GCTCC	2 cut(s)	160, 502
LpnPI	CCDG	8 cut(s)	111, 172, 341, 488, 570, 585, 589, 598
Lsp1109I	GCAGC	2 cut(s)	481, 524
LweI	GCATC	1 cut(s)	767
MaeII	ACGT	2 cut(s)	105, 168
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	5 cut(s)	326, 431, 470, 479, 545
MboI	GATC	5 cut(s)	324, 429, 468, 477, 543
MboII	GAAGA	3 cut(s)	44, 121, 275
MflI	RGATCY	3 cut(s)	429, 468, 477
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	421, 537
MlyI	GAGTC	4 cut(s)	174, 227, 637, 679
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	7 cut(s)	143, 168, 309, 403, 557, 685, 692
MroXI	GAANNNNTTC	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	367, 726
MspI	CCGG	2 cut(s)	475, 585
MspR9I	CCNGG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	35, 521, 530, 566
NciI	CCSGG	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	5 cut(s)	324, 429, 468, 477, 543
NlaIII	CATG	6 cut(s)	44, 139, 202, 250, 274, 488
NlaIV	GGNNCC	5 cut(s)	77, 156, 431, 479, 582
NmeAIII	GCCGAG	3 cut(s)	65, 162, 528
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	250
PciI	ACATGT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	214, 340
Pfl23II	CGTACG	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	3 cut(s)	6, 496, 514
PleI	GAGTC	4 cut(s)	174, 227, 637, 678
PpsI	GAGTC	4 cut(s)	174, 227, 637, 678
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	571
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	5 cut(s)	77, 156, 431, 479, 582
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	3 cut(s)	429, 468, 477
RsaI	GTAC	5 cut(s)	167, 209, 656, 710, 841
RsaNI	GTAC	5 cut(s)	166, 208, 655, 709, 840
RseI	CAYNNNNRTG	2 cut(s)	367, 726
SacI	GAGCTC	1 cut(s)	52
SatI	GCNGC	3 cut(s)	5, 495, 513
Sau3AI	GATC	5 cut(s)	324, 429, 468, 477, 543
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	4 cut(s)	174, 227, 637, 679
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	367, 726
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	2 cut(s)	421, 537
SsiI	CCGC	2 cut(s)	533, 651
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	40, 665
TaiI	ACGT	2 cut(s)	108, 171
TaqI	TCGA	1 cut(s)	436
TasI	AATT	2 cut(s)	421, 537
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	214, 340
TscAI	CASTG	3 cut(s)	61, 335, 768
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	4, 494, 512
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	4 cut(s)	163, 303, 501, 604
TspRI	CASTG	3 cut(s)	61, 335, 768
Van91I	CCANNNNNTGG	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.